mRNA_P-littoralis_Contig186.134.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.134.1
Unique NamemRNA_P-littoralis_Contig186.134.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 1.800e-105
Identity = 171/236 (72.46%), Postives = 195/236 (82.63%), Query Frame = 2 
Query:  410 SLRLGEVRSSGGIFDPFVYRGSGSQGLPPMMSRDGFKTRWGIMRSHLKSGMCAGVIQARRKHVPDFHASKFPPVADKVFEDFVQAHRKGDMHALAGLTTEELYDSLKSEIKKTKSKGGRRPAFRLVAFGEPTRVLQMRVDRKPHISPKEGWGQVTCRLCTKRELVVVDANGKEVRPAEDDEKATEAQNVTIGIFEVFFGDSSGRWRLAVVQEVGEAAAGAV--TGATKP-PQAPPQ 1108
            S RLGEVRSSGGIFDP+VYRG+G +GLPPMMS +G + R GIMRSHLKSG+CAG+IQ   KHVPDFH SKFPPVA+++F+DF +AHRKGD  ALAGLTTEELY SLK EIK +KS+G +R AFRLV F EPT VLQMRVDRK HISPKEGWGQVTCRLC++R+L+VVDA G EV  A+ DE AT AQNVT+G+FE FFGDS+GRWRLA+VQE  EA AGA   TG TK  PQA  Q
Sbjct:   15 SSRLGEVRSSGGIFDPYVYRGAGGKGLPPMMSSEGVRERLGIMRSHLKSGVCAGIIQ---KHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGAQRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVTCRLCSERQLLVVDAKGNEVE-AKADEDATTAQNVTVGVFEAFFGDSAGRWRLALVQEFAEAPAGATSATGKTKKSPQAQAQ 246
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BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.350e-39
Identity = 78/191 (40.84%), Postives = 117/191 (61.26%), Query Frame = 2 
Query:  491 PPMMSRDGFKTRWGIMRSHLKSGMCAGVIQARRKHVPDFHASKFPPVADKVFEDFVQAHRKGDMHALAGLTTEELYDSLKSEIKKTKSKGGRRP----AFRLVAFGEPTRVLQMRVDRKPHISPKEGWGQVTCRLCTKRELVVVDANGKEVRPAEDDEKATEAQNVTIGIFEVFFGDSSGRWRLAVVQEVG 1051
            PP+ +  G K R+ + + H+KS     +I   +KHVP F    FPP+AD+VF+ F+ AHRKGD+ +L  L TE L+D++K+++ +   K G  P    AF+L+   EPT VLQ+R   +     K GWGQ+T +  T RE++ VD  G+EV+P     K  E+  +T+G+ E+FF D +  WRLA++ EVG
Sbjct:    5 PPVYTLAGLKHRFTVYKGHMKSSAAIAII---KKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVES--ITMGVLEIFFNDPAHTWRLAMLHEVG 190
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BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot
Match: A0A6H5K0Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.680e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 2 
Query:  401 PFRSLRLGEVRSSGGIFDPFVYRGSGSQGLPPMMSRDGFKTRWGIMRSHLKSGMCAGVIQ 580
            P RS RLGEVRSSGG+FDP+VYRG+G +GLPPMMS +G K R GIMR HLKSG+CAG+IQ
Sbjct:   18 PLRSSRLGEVRSSGGVFDPYVYRGAGGKGLPPMMSSEGVKERLGIMRGHLKSGVCAGIIQ 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKT9_ECTSI1.800e-10572.46Tim44 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YW25_9STRA2.350e-3940.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K0Z7_9PHAE5.680e-2275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:404328..407756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKT9
Preferred nameKRE29
PFAMsNse5,Tim44
Model size1987
Max annot lvl2759|Eukaryota
KEGG koko:K09657,ko:K17426
KEGG ReactionR07610,R07611
KEGG Pathwayko00513,ko01100,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
Exons5
Evalue1.63e-92
EggNOG OGsKOG4599@1|root,KOG4599@2759|Eukaryota
Ec32 ortholog descriptionTim44-like domain
Ec32 orthologEc-17_001350.1
EC2.4.1.244
Descriptionmitochondrial translation
Cds size615
COG categoryL
CAZyGT7
BRITEbr01610,ko00000,ko00001,ko01000,ko01003,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.134.1prot_P-littoralis_Contig186.134.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 405204..407260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789892.7503986-UTR-P-littoralis_Contig186:404327..4052031680789892.7503986-UTR-P-littoralis_Contig186:404327..405203Pylaiella littoralis U1_48UTRP-littoralis_Contig186 404328..405203 -
1680789892.821932-UTR-P-littoralis_Contig186:407260..4077561680789892.821932-UTR-P-littoralis_Contig186:407260..407756Pylaiella littoralis U1_48UTRP-littoralis_Contig186 407261..407756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789892.7674792-CDS-P-littoralis_Contig186:405203..4053311680789892.7674792-CDS-P-littoralis_Contig186:405203..405331Pylaiella littoralis U1_48CDSP-littoralis_Contig186 405204..405331 -
1680789892.7770379-CDS-P-littoralis_Contig186:405671..4057861680789892.7770379-CDS-P-littoralis_Contig186:405671..405786Pylaiella littoralis U1_48CDSP-littoralis_Contig186 405672..405786 -
1680789892.787531-CDS-P-littoralis_Contig186:406359..4064971680789892.787531-CDS-P-littoralis_Contig186:406359..406497Pylaiella littoralis U1_48CDSP-littoralis_Contig186 406360..406497 -
1680789892.7964866-CDS-P-littoralis_Contig186:406800..4069411680789892.7964866-CDS-P-littoralis_Contig186:406800..406941Pylaiella littoralis U1_48CDSP-littoralis_Contig186 406801..406941 -
1680789892.8059907-CDS-P-littoralis_Contig186:407167..4072601680789892.8059907-CDS-P-littoralis_Contig186:407167..407260Pylaiella littoralis U1_48CDSP-littoralis_Contig186 407168..407260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.134.1

>prot_P-littoralis_Contig186.134.1 ID=prot_P-littoralis_Contig186.134.1|Name=mRNA_P-littoralis_Contig186.134.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=205bp
MMSRDGFKTRWGIMRSHLKSGMCAGVIQARRKHVPDFHASKFPPVADKVF
EDFVQAHRKGDMHALAGLTTEELYDSLKSEIKKTKSKGGRRPAFRLVAFG
EPTRVLQMRVDRKPHISPKEGWGQVTCRLCTKRELVVVDANGKEVRPAED
DEKATEAQNVTIGIFEVFFGDSSGRWRLAVVQEVGEAAAGAVTGATKPPQ
APPQ*
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mRNA from alignment at P-littoralis_Contig186:404328..407756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.134.1 ID=mRNA_P-littoralis_Contig186.134.1|Name=mRNA_P-littoralis_Contig186.134.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3429bp|location=Sequence derived from alignment at P-littoralis_Contig186:404328..407756- (Pylaiella littoralis U1_48)
GGGGAGTCAACGCAGCAGCAAGCGTTTGGTTAAAGCATAAATTATGTCAT
TTTATAGGAGTGTAAACAGGCGGGTTTGGGACACCTCAAATTCTGCCTCT
CTGACAGTGTTAAAAAGATTCTGAAATCTAAAAAAGTTCGCAAGATACGC
GAACCCCACAACTTTTTACGTTTTCCGAATATTTCCTCCAAAGAAGTAAG
AGAGTAGAACAGTCGAGAAAGATTGGCAGAACCTAGGTATGATAAAGTGT
GTGTGTTCGTCCCATTGATTTTGGGCACAGGTCTACACCTTTCGGTTGTA
CGGCAACGAAAATGCTCCCACGAATTTCGATTGAGCTCCGCGACCTCATT
GCTGTCGTGGCGCAGTTTGGATGTAACCTCGTGGACCTAATTTCCAACAT
CCATTCCGCAGCTTGCGTTTGGGGGAGGTTCGCAGCTCCGGAGGCATATT
TGACCCGTTCGTGTACCGAGGGAGCGGGAGTCAAGGCCTCCCGCCAATGA
TGAGCCGGGATGGCTTTAAGACGCGCTGGGGAATCATGCGGAGCCATTTG
AAATCCGGAATGTGTGCGGGCGTCATCCAGGCAAGACGTGTGGTGTATGG
TGTGCGAAAGAGCTTGCTGCTTTTGCCGGCCGTGCTGCTCGTAGCTGTGG
CAACGGACCAGACGACCAGACGCGTGAGGCCTTTCCCTGTGCGCAGGTTG
TCTTCTGTAGCAGTACCCTATGTCTGCTCCCGCGCGGTAACCTGTTGGTC
TTTTCCAAAGCCCCCTTTTGCCTGTCCCTCGCCGAATATCTCTCATTCGT
GCTCGACCATTTCAGAAGCACGTACCGGACTTTCACGCATCCAAGTTCCC
TCCAGTGGCCGACAAGGTCTTCGAAGATTTCGTTCAGGCGCACCGAAAAG
GCGACATGCATGCTCTTGCGGGGCTGACGACGGAGGAGCTGTACGACTCC
CTGAAGGTGCATGGAGTCGGGAACAAGTCTTGTTTGTGTGCGTATGATAG
AATGAACACAAGTCTAGGGTTCGCTTGATGGAAAATGGCCGGTCTGAAAA
GTGTGTTGAGTAGCACAGGTTGGAGCATGCGTCCCTCGTGGTACGGGCTA
GTCTTGCTTTGTTTGACACACCTCATTCTTCTTGATTTTTTGCGCCTCGA
CAGTCAGTCGAGGACGACAACGCTACTCGAGCCGCGGCATCTCTCTCTCT
CTCTCTGACTCAAAGTCGGCTTAATACTATCGCTTGCGAAACGAAACCTG
GTTGTCCAGAGCGAGATAAAAAAGACTAAAAGCAAGGGAGGACGGCGACC
AGCGTTTCGATTGGTGGCGTTCGGGGAACCCACACGGGTGCTGCAGATGC
GGGTGGACCGTAAGCCACACATCTCCCCGAAAGAGGGTTGGGGACAGGTG
AGCGCTCGCTGCTACTATCGTTATGTGCTTCCTGGCGCCATGTAGTCGGT
GTCATGGACGCGGTAGCAAGTTCAGAGGCCGACACCGCACGACCAAGATG
GGATGGGCCAATCGCTTGTGGAGTTCGAGAACTAAGAGCGTTGGATGTTG
TCGTCGGTTCCCTCACCAGGCGACGATGCTGTTTCGCTTCGGGAAGAACT
GTCGTGGTACTGTCGTGGTACTGTCGTGGTTGTTCTCGAAGGTAGTATGA
GTCTTGGGTATCGCTGTCATCGGCTTCGACATCACATTTTCTGGTTCTAT
TGGAGCGCTTACCGGGAGGAAGCGCATGTACTCCCCTCCGTGCTGTAGAA
TCACGTCTCGGGCCGCTTGTCTGCCTTCACTTCGACCTGCAGAACCATGT
CTGTTGTTTGTCTATCGAGCCGGAAGAAGCGGTACCTCAGCAAGTGCGTT
ATTTCAAAATGCAGAGCCACTGACCTATATTTCTGTCTGTATTTGAAAAA
GGGCAGAGGCGACCTTGTCACCCGCTCTAACCACCACACCTTCGCCACCT
TTGTTGCCTTGAATGCCCAGGTTACGTGCAGGTTATGCACCAAGCGAGAG
TTGGTCGTGGTGGACGCAAACGGGAAGGAGGTGCGGCCCGCGGAAGATGA
CGAGAAAGCCACTGAGGCTCAAAACGTCACAATAGGTGCGTGTTGTCCGA
ACGAATACCTCGCGATTGGGTCCTGCTGATGCGCCCCTTCAGGTGTCTTT
TGTCGGTCAGTGAAACCCGACCTGTAAGATCCTACCGATTGTCGGGGGCT
GTTGTGGTCGGCTTGGTTTTTTCTAAAACGACGAGCGGCCTCTCGTGTGC
CGCAGGTTCCAATAGCACATCGAGCAGTATGGTCGTGTGGTGGAGCTCGT
CGAGTGGGTTGGATGAAGTCGAATCGCTACTGCCTGCCTCGTGATGTTTT
CGACGTTCCTCCGTGGAACCCCTGCTGCACACCCACCTATTTGTCTTCTC
CCCTTCCTGCCTGCTTTCTCCTCAGGCATATTCGAGGTGTTCTTTGGAGA
CTCTTCAGGGAGATGGAGGCTGGCCGTGGTGCAAGAGGTGGGCGAGGCAG
CTGCAGGCGCTGTTACGGGGGCGACGAAGCCTCCACAAGCGCCACCACAG
TAGTAAAATTGGCAAGCTTTGGGCGCTGTCGCGTCTCACCCGGCGATCCG
TTGCCTGCGAGTTTGACAATGCGGAATGATCACTTGCAGGCCAGTAGGAG
GAAGTCGAGTCTCGCTGACGATGCTGTGATTTCGTGCAGAGGATATTGGG
TGTCGTATTTAGTACCGTTTGGTTCCGCAGTATCGGTCGGTATTTCAAGT
CCGGTTCACATTTTTTTGTTTTCCCAAAACTCCTTTTCCTCACTCCACGT
GGGGTGAGGAAGAAAAGGGTTTTGGGGGAAAATAAATAGAAGTGTATTTT
TGTACATTCCTTAGGGCTGTGTAGGAGGTATTGTTTGGTGGCGTGGTCGA
AGTTGAGCGTACGAGACACGGTTCGTGCGTCAGCGTCAAGAGCGTCTCTG
CATGGGCGCAAATTTGAGGCAATTCGTGAAGTAATGGTGTTTCGGGGATA
AACGGATTGTTTTGTGTATTCTTCCCATTCCTCGTAAGCTCTGAGAAAAA
GACCCTCCGGTGGTCTCAAGGACCGAGCACGACGGGTATCGGGGTACTTG
AAGACTCCCCGTGCTGAATGAACGAACTCGACGGATCGAGAAATCATGTT
TGTACTTGATGACCACGGCCGACGTGAGACGGCAGTCTCGGTGTCGGATG
TTGAGGCACGAACGGCGACCGTGGGAAAAAGTGGGACACGAGGATATCTT
CTAGATCTCCTCAACAAGAATTTTGACTCGCAGTTATCCGATTGGTCACA
AAAAGGCATGTCCACGTATCATAGGTTGATCACATTGTCCGGACAAAACA
GAACGCGTACCGCACCGAAGCCCTTCTGTATTTTGAGAAAGTATGCACGG
TCGCTGTCTCAGGGGGAGTTAATACTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig186:404328..407756-

>mRNA_P-littoralis_Contig186.134.1 ID=mRNA_P-littoralis_Contig186.134.1|Name=mRNA_P-littoralis_Contig186.134.1|organism=Pylaiella littoralis U1_48|type=CDS|length=615bp|location=Sequence derived from alignment at P-littoralis_Contig186:404328..407756- (Pylaiella littoralis U1_48)
ATGATGAGCCGGGATGGCTTTAAGACGCGCTGGGGAATCATGCGGAGCCA
TTTGAAATCCGGAATGTGTGCGGGCGTCATCCAGGCAAGACGTAAGCACG
TACCGGACTTTCACGCATCCAAGTTCCCTCCAGTGGCCGACAAGGTCTTC
GAAGATTTCGTTCAGGCGCACCGAAAAGGCGACATGCATGCTCTTGCGGG
GCTGACGACGGAGGAGCTGTACGACTCCCTGAAGAGCGAGATAAAAAAGA
CTAAAAGCAAGGGAGGACGGCGACCAGCGTTTCGATTGGTGGCGTTCGGG
GAACCCACACGGGTGCTGCAGATGCGGGTGGACCGTAAGCCACACATCTC
CCCGAAAGAGGGTTGGGGACAGGTTACGTGCAGGTTATGCACCAAGCGAG
AGTTGGTCGTGGTGGACGCAAACGGGAAGGAGGTGCGGCCCGCGGAAGAT
GACGAGAAAGCCACTGAGGCTCAAAACGTCACAATAGGCATATTCGAGGT
GTTCTTTGGAGACTCTTCAGGGAGATGGAGGCTGGCCGTGGTGCAAGAGG
TGGGCGAGGCAGCTGCAGGCGCTGTTACGGGGGCGACGAAGCCTCCACAA
GCGCCACCACAGTAG
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