mRNA_P-littoralis_Contig186.114.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.114.1
Unique NamemRNA_P-littoralis_Contig186.114.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: D7FKV0_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV0_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.590e-67
Identity = 120/175 (68.57%), Postives = 140/175 (80.00%), Query Frame = 3 
Query:  114 MRVGIVSLLGMLAAHVDGSSAFLFP-----TFGRAPTRTGNL-CAYDVTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVELEIGVGDKMYDAQYGEFRKGHDDAQNSKPGKWNLPFPDVSGA 620
            MRV  +++ G+    +D +S F+FP     T  RA   +  L  A DV VT+   G VRTVA +EG ++L+ LEAH+IDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDP+ISARGFVLTCSSTVAGPGVELE+GVGDKMY+AQYGE  +GH+DAQ +KPGKWNLPFPDVSGA
Sbjct:    1 MRVVRIAIGGL--CMLDLTSGFVFPAPAVSTCRRARMSSSPLRAANDVKVTVE--GVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAKPGKWNLPFPDVSGA 171
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: A0A7S1NQA7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NQA7_9EUGL)

HSP 1 Score: 127 bits (320), Expect = 8.840e-32
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 3 
Query:  270 RTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVELEIGVGDKMYDAQYGEFRKGHDDAQNS 575
            +T+   + +TLL+A+EA  IDAPHSCR+GLCTECA  VT+ LD++ L+A V        G+VLTC++ V GPGVE+ +G+GD+MYD+Q+G+FRKGH+D Q++
Sbjct:    2 QTILVPKSETLLDAMEAAGIDAPHSCRTGLCTECAGRVTSGLDSIDLQACVTQDSTFNEGYVLTCAANVTGPGVEITLGMGDEMYDSQFGDFRKGHEDMQSA 103
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.850e-16
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 3 
Query:  204 PTRTGNLCAYDVTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVELEIGVGDKMYDAQYGEFRKGHDDAQNSK 578
            PT+T     +DV +T    G  + +   E   +LEA E    D P SCR+G+CT CA  V AN D+ K     L  + S  GFVLTC +   GPG+E+E+G+ D +Y++QYG++ K     Q SK
Sbjct:   51 PTKT-----WDVKMTYK--GETKVLTVSEDTCILEAAE-KEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSK 167
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: A0A7S2XX00_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX00_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.480e-15
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 3 
Query:  231 YDVTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVELEIGVGDKMYDAQYGEFRK 551
            +DV++T    G  + +   E Q +LEA E    D P SCR+G+CT CAAMVT   +++ L    L  +   +G+ L C S   GPG+++E+G  D++Y+ QYG++ +
Sbjct:   23 WDVSITF--NGETKVITVPEDQNILEASEELFGDVPCSCRNGICTTCAAMVTGGEESLTLAVHGLSAEQREKGYTLCCQSYATGPGLKVELGKYDEVYEDQYGKYER 127
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: A0A6H5K0E4_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.760e-11
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 3 
Query:  114 MRVGIVSLLGMLAAHVDGSSAFLFP-----TFGRAPTRTGNL-CAYDVTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTE 368
            MRV  +++ G+    +D +S F+FP     T  RA   +  L  A DV VT+   G VRTVA +EG ++L+ LEAH+IDAPHSCRSGLCTE
Sbjct:    1 MRVAHIAIGGL--CMLDLTSGFVFPAPAVSTCRRARMSSSRLRAANDVKVTVE--GVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTE 87
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: Q3AZL8_SYNS9 (Ferredoxin (2Fe-2S) n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=Q3AZL8_SYNS9)

HSP 1 Score: 60.1 bits (144), Expect = 1.580e-7
Identity = 36/112 (32.14%), Postives = 63/112 (56.25%), Query Frame = 3 
Query:  222 LCAYDVTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVELEIGVG--DKMYDAQYGEFRK 551
            +  Y V+  +   G V     +  QT+L A EA  I+ P SC +G+CT CAA+++A   + + +A  +  D+  +G+ L C   V+ P  +L +  G  D +Y+AQ+G+++K
Sbjct:    8 VATYSVSAEIE--GEVHQFKCRADQTVLNAAEAAGINLPSSCCTGVCTTCAAVISAGSVD-QPDAMGVRSDLQEKGYALLC---VSFPRADLTLKTGQEDALYEAQFGQYQK 113
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: A0A4Y3G2Y9_9CYAN (Ferredoxin n=1 Tax=cyanobiont of Ornithocercus magnificus TaxID=2496102 RepID=A0A4Y3G2Y9_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.810e-7
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = 3 
Query:  222 LCAYDVTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVELEIGVG--DKMYDAQYGEFRK 551
            + +Y V   L   G   +   +  QT+ +A E   +  P SCRSG+CT CAA+V+  +   + +A  + P++  +GF L C   VA P  +L +  G  D +Y+AQ+G+++K
Sbjct:    6 VASYTVHAEL--NGEKSSFQCRSDQTIQQAAENAGVMLPSSCRSGVCTTCAALVSDGIVE-QPDAMGVKPELQEQGFTLLC---VAYPRSDLSLCAGQEDILYEAQFGQYQK 111
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: A0A7C3ZYD2_9RHOB (Ferredoxin--NADP reductase n=1 Tax=Aliiroseovarius sp. TaxID=1872442 RepID=A0A7C3ZYD2_9RHOB)

HSP 1 Score: 63.2 bits (152), Expect = 4.290e-7
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 3 
Query:  261 GGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVEL 497
            G  R V    GQTLLEA  A ++DAP SCR+G+C+ C A VTA    ++   A+ D ++  +GFVLTC        +EL
Sbjct:  273 GASRKVKVAPGQTLLEAALAADLDAPFSCRAGVCSSCKAKVTAGKGEMRANHALEDYEVE-QGFVLTCQCVPTTDKIEL 350
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: UPI000E654160 (phenylacetate-CoA oxygenase/reductase subunit PaaK n=1 Tax=Cohaesibacter haloalkalitolerans TaxID=1162980 RepID=UPI000E654160)

HSP 1 Score: 61.2 bits (147), Expect = 1.830e-6
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = 3 
Query:  186 PTFGRAPTRTGNLCAYDVTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVEL 497
            P   R  + TGN CA  VT+   DG        K+G ++L+A  A+++DAP+SC++G+C+ C A V      + +  A+ D ++ A G+VL+C        V L
Sbjct:  255 PAVSRETSVTGNSCAVSVTL---DGATRSFTMPKDGNSILDAAVANDMDAPYSCKAGVCSTCRARVLEGEVEMAVNHALEDYEVRA-GYVLSCQCVPVSDKVVL 354
[Close]
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Match: UPI001FD6B371 (phenylacetate-CoA oxygenase/reductase subunit PaaK n=6 Tax=Hymenobacter TaxID=89966 RepID=UPI001FD6B371)

HSP 1 Score: 60.8 bits (146), Expect = 2.440e-6
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 3 
Query:  237 VTVTLPDGGGVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPDISARGFVLTCSSTVAGPGVELEI 503
            VTV L DG       +  G T+L+AL A  +DAP+SC++G+C+ C A VTA    + +  ++ D ++ A+G+VLTC +    P V ++ 
Sbjct:  270 VTVQL-DGRAYPLAMSYYGDTVLDALLAIGVDAPYSCKNGMCSTCRARVTAGTAEMDVNYSLSDTEV-AKGYVLTCQARPTTPEVTVDF 356
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKV0_ECTSI4.590e-6768.57Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S1NQA7_9EUGL8.840e-3253.92Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A4D9D796_9STRA8.850e-1640.002Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2XX00_9STRA3.480e-1537.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5K0E4_9PHAE4.760e-1149.452Fe-2S ferredoxin-type domain-containing protein n... [more]
Q3AZL8_SYNS91.580e-732.14Ferredoxin (2Fe-2S) n=2 Tax=unclassified Synechoco... [more]
A0A4Y3G2Y9_9CYAN2.810e-733.04Ferredoxin n=1 Tax=cyanobiont of Ornithocercus mag... [more]
A0A7C3ZYD2_9RHOB4.290e-743.04Ferredoxin--NADP reductase n=1 Tax=Aliiroseovarius... [more]
UPI000E6541601.830e-633.65phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]
UPI001FD6B3712.440e-637.08phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:312612..323069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKV0
PFAMsFer2
Model size1585
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue9.5e-73
EggNOG OGsCOG0633@1|root,2T1YF@2759|Eukaryota
Ec32 ortholog descriptionferredoxin
Ec32 orthologEc-17_001470.1
Description2Fe-2S iron-sulfur cluster binding domain
Cds size510
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789892.047023-UTR-P-littoralis_Contig186:312611..3127241680789892.047023-UTR-P-littoralis_Contig186:312611..312724Pylaiella littoralis U1_48UTRP-littoralis_Contig186 312612..312724 +
1680789892.0906484-UTR-P-littoralis_Contig186:322107..3230691680789892.0906484-UTR-P-littoralis_Contig186:322107..323069Pylaiella littoralis U1_48UTRP-littoralis_Contig186 322108..323069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789892.0586135-CDS-P-littoralis_Contig186:312724..3129781680789892.0586135-CDS-P-littoralis_Contig186:312724..312978Pylaiella littoralis U1_48CDSP-littoralis_Contig186 312725..312978 +
1680789892.0698204-CDS-P-littoralis_Contig186:321320..3214801680789892.0698204-CDS-P-littoralis_Contig186:321320..321480Pylaiella littoralis U1_48CDSP-littoralis_Contig186 321321..321480 +
1680789892.0804722-CDS-P-littoralis_Contig186:322011..3221071680789892.0804722-CDS-P-littoralis_Contig186:322011..322107Pylaiella littoralis U1_48CDSP-littoralis_Contig186 322012..322107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.114.1prot_P-littoralis_Contig186.114.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 312725..322107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.114.1

>prot_P-littoralis_Contig186.114.1 ID=prot_P-littoralis_Contig186.114.1|Name=mRNA_P-littoralis_Contig186.114.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MRVGIVSLLGMLAAHVDGSSAFLFPTFGRAPTRTGNLCAYDVTVTLPDGG
GVRTVAAKEGQTLLEALEAHNIDAPHSCRSGLCTECAAMVTANLDNVKLE
AAVLDPDISARGFVLTCSSTVAGPGVELEIGVGDKMYDAQYGEFRKGHDD
AQNSKPGKWNLPFPDVSGA*
back to top

mRNA from alignment at P-littoralis_Contig186:312612..323069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.114.1 ID=mRNA_P-littoralis_Contig186.114.1|Name=mRNA_P-littoralis_Contig186.114.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10458bp|location=Sequence derived from alignment at P-littoralis_Contig186:312612..323069+ (Pylaiella littoralis U1_48)
CGTTCATGTGTACCGTGCACCGTACTCTTGTCTGTTGTCTGCCGTGGGTA
TTTTCTTTTCCCTTCGCAACGTAGTCATATCAGACCGCGTGCTTCCCACG
CGACTCGTGAACGATGAGGGTGGGAATTGTGTCACTGCTGGGTATGCTGG
CTGCACACGTTGACGGGAGTTCAGCTTTCTTGTTCCCGACATTCGGTCGA
GCGCCAACCAGGACGGGAAACCTATGCGCGTACGATGTGACGGTAACGTT
GCCAGACGGCGGTGGGGTGCGGACAGTGGCGGCGAAGGAAGGCCAGACCT
TGCTGGAAGCTCTCGAGGCTCATAATATCGATGCTCCACACAGCTGCCGA
TCTGGATTATGCACGGAGTGAGTACTGGCGGTAAAATCAGGGTGGCCGAA
ACTGACTGTGATCATCGAGTACAGCAGTACGAGTGCTGTTTTGTTTGGAC
AATTTCTACAGCATACAACAAGTGCAGTAACACGATCTGGCTTTTCTTCT
CACAATGCGCGCGAAAGTGGAAAGCGATTAATCCGTGAGTAAACAAAATT
CGACCGTACCATCGACGAGGGAAAAGGGATCGCTGTCCCCTTTCTCGCGA
TGAAAGCTCAACCAAAACAAGGCAAGCACCGCAGAGGGGAGTGGAGAAAA
AAAAAAAAAACTCCTGTGTTCCCCCCGTGTGACCCCAGTTGGAGTGTCGA
CCTACCCGAAAGGTGCAGAGTGGTGTCCAATTAACCCTTCTGGAACTTCG
GAGGTGATAAGGCTGGGTCTTAACCGGAAATCAAAATCAAAGATAGAAAT
CAAAGTTCATATTAGAGCTGGAAAATCCAAAGAACACATCCTGTGATTGG
GTGAAATGAGGAGGAGTCAGCTTCCGCCCTGCAGCACAGAGACGGCTCTT
TCCATCTAACTTATATATCCCGAATTCTAACAAGGATTTCAAATAAATGA
TTTCGCATTTAATTGAAATCAAAGTTGGCGAAACGTAACACATAAAATTG
AGATATTGCTCATTTCTGGTCTACTCGATGGTCTTGGGCAGGTTCTTCTG
CTGTCTAACAGATACTACTTACTGTTTGTATCGGAGCGGAGCAACACGTA
CGTACGAACACACATGTGTATTAGTATGCTCTGCAGGACCAACAACAGCA
GCAGCAGCAGGGGTGAGGTGTGAGACGAGGTGTGAGACGCATGGATGGGG
TTGCGATTTTTCGCGACACAAGGAGGGGGGAACCCAGTCGTTGGCTCTCC
AAGCTGGTCTTCCGTGCAAGCCACTTTTCACCAGCATGCATGCACACACA
CCATCCATGCTGCCGCGCATATATATGCGATCGGATTGCTCTTGGTGTTG
CTAACGCCACGTACACAGCTTTTGTTTGTAGGGACCAAAGGGCTGTTCAA
GTCCCGAGGATGCTCCGTTATTCAATTCTGATTTCGATTTCGGCAATTTT
GGTTAAGACACCTTCGAATCAAAACCACAATTGGGTTGGATCTTCCACCT
CTAATATGAACTTTGATTTCTAATTTTGATTTTGATTTTCCGGTTAAGAC
CCAGCCTAAACGCATCAAAAAAATAAAAAATTAATCATAAATACTTTATT
TTTTTATATAAGGCTACATCTTATGTGTCAAAAACGTCATTATTTGTTTT
GGGCCGTTCGGATAATAACGTTTCCAACAGGCTCTGTTGAAGGACCCGAT
ATTGTGTTTAAAACGAACAGCAGGTGGTTTTATTTTTTTTAATAACTTCC
GAAAAAAAGTTATCTCCTGTTCGGTTGGGGCGGTTTGATGGTAGACAACT
CGAGTCTCATTTATTTGCACTGCTGTTACCGGTTCGCTCTTTCGTCCACC
ACTCTCGAACGAATGAAGCCACAGTAATGGTAAGGACATGCCTCGCGAGC
TGGGTGTATGGTCCTTCTTCTCCGGTAGTTATATAACACCGCGAGGTATC
GATAGACTGGCGAAAAAATGTTGCAGGTATCACCGATGACGTGTGGAGAA
ATGAAAAAAAATCGACGCAGCTGACCACCAGCAGCAGCAGGTGGTGGTGA
TTTCTTCTTTTTTCCACTGGCCATCAATTCCTGCAATCCTTCTTTGCCAG
CCTATCGATGCCTCGCTGCTTCAGAGGACCACCGGAGGAGAGAGACCATG
TTCACAGGTCGCGAGGCATGGCTTTCTCATTGCTGTGGCTTCATTCGTCC
GAGAGCAATCAACAGAAAATCAAACTGGTGTGGCGGCAAAAAAAACTGCT
GCTGGTTGAAGAGTTCAGAGGACAGCAGCAGCACAGCCAGCTGCCAGCTC
TCGTCCAATCCATTTTGGTTTTTGGTCCATCGCTCTCGAACGAAAGAACC
CACAGCAATACTAAAGCCATCGACCGTGAGGTGTATGCATGGTCCTTCTC
CTTCGTCGGTCATCAGAGGCCGCGAGGAATCGATAAGCTACCAAAACAAA
GGTTTCATGCCATGTCATCATGCAAGGCTGACTGTAACTTGGGTTGTTCA
AACTCCTTGACCAAAAAAAATAACAGGTTTCCGATAGCTGCAGGCTATCA
GAAAAAAGACTTTTTCTGATCGTTTGGGGCTATCGGAAAAATTTATTCGA
AAAGTCGCTGTCTAAAATGACTGTTTCTGATCACATCAGATGCTCCGTTT
TGGTCCAATGTTCAAAACAGCCAAATAAAATAAAAATATATGAACGGTTC
TGACACATAAGATGTAGCCTAAGCCAGTCTCTTCGGGACGGGGACAGAAA
CAAAAAATTCCCGAACCCCTCACGTTGGGAGTTGAGCAGCATTCCGGCTG
CACTCAGATACGGGCAAGAGGACAAACAAACACCGCTCACAGCTGCTGCT
GTGTGTGGTCAAGGGGTGTGAGGGTGCCCAGCAAGACTCATTCAACATAA
TAAATCCCCGGCATGTCGAAATCTGAAATCATCTCTTCTGACACACAGGA
TAATATACACTTCGCAGTGTATCATATTTTTCTGGAGTGCAACACCACAC
CACTATTATAGCAGCACTGCTCCTACTACAACAACTGCTACTACTGCCGC
TGCTGTACACCAGTACATCACATGCCATATAAATGATACCTCCTCTCTTG
TTGGTATGACACAATAATCAATAAGAGTAGTAGTAGTAGAGAGTTAGAGA
ATCGTACCTCTATGTATGAAACATCATGGTATCTTATTTACTCCGTACTT
CGAAGTATCGTGTTTGGTCAAAACCCAGCGACAACAGCAGCAGCAGCAGC
ATGTATGTGGATGCGTAGATAGATGAATGCGATTGGTTGCTAGATTACTA
CTACTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTACC
AGTACCAATGGTGTGCCTACTATGTGCGAGAAGGAAGGACCGGCATTCAG
GCCGGCCGCAGGCCACGGGCCCCCTGCGCAAAAGTACGTTGACCAGGCCG
GGAGCTACAGCGGGAAACGAGTAACTCCTTAGCAGTAACTCTTTTTCCTT
ATTATCTTGTTTTGAGCGTACCGGATACTTTAAGCGCTGTTGATGATTAG
AACACGTTGCACGACGCCTGAGAGCTAGCCGCGGTATCTCGACCACCGTG
TATCCCTTCTGTACTCTCCAGGGACGTAACCAGCCCGCTGTGAGCCCCCG
GCAGGGGCCCTGGCTGTGTATCTTTGTGGTGCGGTTGTGTACATTTTCTC
TTGGTTTCGTGACTGCTGGACATTTGAGAGGGGCATTTGAGCCATATTTT
TTTTTCTCGGGGGAACATTGTATGGATCTGATTTGGAACCCGGGCTGTTC
GTGTGAAAAGGAACAAAACACCCTGGTCCCAGAAGGGTTAAAGGGATGAC
AACAAACACACACAACACAACCGCATCGTTGTGCATACAACCGTCGTTGT
ACAGCAGTATGTAGCGACAATTGCTGCACCTCCAACTGCTGATTCCTTCA
CCTGCTTGCTGCTTGTACCGTCAGTCTACCACTTCTTTTACTCGTCGCCC
CGCTTGTTCAGTGGCAACCTCGGAGCCTTTGACACCCAAGACGTGAGGTT
GAACCCCCGGTGAAATCACACGATCTCGGATTTTTCTTGTGTGCAGAAGT
ACTGCTTACCTCCGTACTGCTGTAGTTCTTGGGAGTGAAACGGCAGTCAT
ATCATATGATACGTCGCGATCATACAAACACATTCGACACAGCAGGTGAC
GAGGGTAAGGGACGGTCGAACCCTTCTCGCGAAAAAAAGCCGAAAGACAG
AAAAGACAAGCAACTGAGGAGGTGGGTGGAGGGAAAAAGAGAAAACTCCT
GCAACCTTGTCGATGCTGCTGCTGTGTGACCTCAGCTACTTTGTACTCGT
TTCGCAAAGAGTACACCCACTTCGTACCGAAAGGTGCAGGCTGGTGCCCA
AAATAAAGGATTAGATGGGATGAAAAAAAAACACACACACATACACACAC
AAACACGCACGCGCGCACACACTCAAACACGGTACATATTGTGGGTCGCG
CTTAGGTGAAAGTAGTGAAAAATAATACTCCGAGTAGTTATATGACCCCA
GTGCCGATTTTGTTTGGTTTGTGGATACCACACCTTGGACAATAGCCTAT
CGGATACGTAGGCATATTGGTGACCCAATAGGTCTTGAAGTAGCCTATCG
TTACCTGTTGGTCATTTCCATATGCATTGCGACCACATATTGATGCATAT
TGGCCATTCCAATGGGTATTGCAACCGTTAACCGATACCTTTTGATCACT
TCAATGGGTATTGTTATCATTGATCGATACGTGTTGGATATTCCAATAGG
TGTTGGGATGTCATATCGAAAGTTATTCGTTTGTCAATAGGGGTCATTGA
TTGAATATCGGAAGCTGTTGAATTCTGCAATATATGTTGAGACATCATAT
CGGAACCCATTCAAGAGAGCGTATCGATACCTGACGTTATTTCAATACGG
TCACAAAGAACATGTCCATACCTGTTCAACAGGTCAAAATGGAGGGAGAA
TCGTATCGATGCTTGTTGGGCGTTCCAACATGGGATGGAAAACATATCGA
TGCCTATATATCGCTTGCCAGTCTGGGAAAGAAAATATGTGCTGCAAATC
AAATACGGTGACAAGAAAGATGGGAACGAATTTTGAAATGAGAACGAAGT
GACAACGTTTTTTTGTTTCAACTCGGCGACCAGTACAGAGCAGTCGAAGG
CACCTTTGACGCCGATTTATAATACAGTACGGCTTTTGCGTCCCAACATG
TGTCGCGCCACAACCCCCCCCCCCGCCACCACTTGGTAACACGCAGTACA
GCCCCTCCATCTCTCTCACCAGCAGTACAGCAGTAGAGCAGCTGCTGTAG
TAGTAGTTTGTGTGAGATATCGTGTATAGCTCTCCGCTAGGATAGAGGGA
GAAGATCACACACAGCAAGCAGCACTGCTGTGCACCACTAAATGCTGCAC
GCTGCACACCACACAGCAACCAGCGCCGCTACATTGCATCACACACCACA
CGAGTAGGAGTGACTGCTGTACGACAGGCAGGTGGGCAGCTGTACGGCTG
TAGCCCCTCTTATCTTTCTTACCAGCAGTGTAGCAGTAGCAGCGGTAGTG
TTGTGTGACATATGTACGTATGTGTAATAGCTCTCTGCTACGAGTATAAT
GTACTCCGTACTTCGTAGATAGTAGAGAAGAAAAAAGCTTGCTGCGCTCG
CTGTTTGTACAAAAAACTAGAAGCTTACTGCTGGATCACATATCTATCGT
GTTCTTCACTCGATTACACAGCAGTCAACCTTTGGTTTACTCCAATAGGT
ATCGATCGTTTACCATCCACATGTTGGGCGTGTCCAACATGTATCGATGG
AAAACATTGTAGACATATTTGTTGTCTCAAAAGGTATTGATATTATACGA
AGTATACCATCAACGTATTGGTAACTCCAACATATACTGTTGGATTCACT
TTCAGCCTACATATTAGTCATCAGAATAATGGGGGGGAAGACGTATTTTT
GAAGGATGTCATATCGACAGAGTGTAAAAAAAAAATGCTGCAGAGCAATA
CGTGTCGATAAGAATTTCTGCACACTACCAATCGGTCCAACGTGCTATTG
ATTAGATGTTACGTAGCGTATTGCCGCCTTCAATACCTATCGATACGCCA
CAGCAAACGTGCTTTTGTAGCCGCAACAGGTATTGGATCTCGATTTGAAG
GCCATATTGCCGGACCAACAACCTATCCAACAGGGTATTATCCAGGGCTT
AAGGAAAGTGGAGCAACCTATTGCTGCCGTCAACACCTGTTGCGTGGCTC
ATTATGTTCGCAGCAGATTATCGACAGTTTTTTTCTGAGGCAATAGGTTT
GCAGAAGAATCTATCGATACGTATTGTGTACCTCAGCATCTTTTGTCAAT
ATAATCTCGATGTGTATTACCCAGAGCAACAAGCTCTGGCCAATACCCAG
CAATACCTACTGTGTAATGCAATACCCTCAACCCTGGAAATATCAGTACC
TAACGCCGGGAACGATACCTTCTCGCCATGTCTGTCGGTAGGCGTTCTCT
GGAGCAATATAATTTGGGAAATACATGCCAATCACGACTGACTTACCAAT
ATCTGGCACAACAAACAAATCAAAACCCATTTCCGACACCAATAAGTGCA
AAAAAAGACTATCAATGCCTATTAAAGGCCGCAATAGGCTTCATATTGCC
ATAGGATCCTATCGATACCGTATCGATATGCAACCTATTATCCAGGGTGT
GGTGGATACCGCCTGTATCGACATCACAACCATAGTATACATACCCAACA
CGATGAGAAGATACGAATCCTCTCGGGCTCCACTCTCGACTTTACTCTCC
TTGCTATTTGTAAATTTCACGGAATAAAACGTTACCTTACGCTTGGTCGT
GGGTCAATACATCCACTCTTGTGGTACCCTCTGAGGCTCCGTCTACTGGA
GCTAGTCCAGGTCGAAAATGGTGTCGATTAAGAGATGCTTGCTTTAGGTG
GCCACAAGCACGGACGGGCTCAAATCCCGCCGATGTACCATTGGATGAAA
AGCAGATAACTCGAACTTGCGGAAGTTCTGAGGCATGAGACGTGGCGGAA
GTGGTGGACCCGCAACACAACACGAAGTCCAGAGGATTGTGAAGAGAGGC
GAACTTGACTCGCCTCCAGCCGGTCGGGTTCCGGTTACCCCTCGAAGCCT
TCTTGTTGCCTATCAACCAAATAGGAAACAAAGTCACGCCGACATTTCCC
ATTGCACACGTTTTCGTCGGTCTGCGTACAACAGCAGTGCCGTTGGAAGA
GTGCGGGGGCATCGGCTGCTGTCTAAAACAGTTCTAGAGTAAAAGCAAGT
GAAGGCGTCGCCGAAAATTGCGACGTGTTCAATTGCTTCAAGACTTCGTT
TGTGAAACGGGCGGTAAGGTATGAAAAAGTTCAGCTTCTGTGGGTCACGT
GACTGTGGTGACCGCATACATATATACGCGCTGCATGCACACCAGTCCAC
ACATCCATAAATCAAGAGATATTCGTATAGAGCGTGCCCGACCACAACAT
ATTGTTATTGACAGCCTCGAGCGCCCAGGTGGCGGGCAGGTGATGAAATA
AACAAAAAACTAGCGACCCAAAATGGCGACATTTAGCGATCTGGGGTAAG
ATAGTTTATATATATACTTCAGTATGCGATCAACGAGCGAAGCGAGGTCC
TCCTGCTGTAATTTACATTTCAATATCAAAGAGCTATTTTCAAAGACAGC
AGAGTTTCGCAGCAGTAGCACCGAGTGCCAACGCGTTAGTTCAGCAGCCT
TGCGTCAATCGTCCCGCTGTGAGAGTCGGGCTACGCATTCAGTTTTATTG
CCATGCTCGTGGGCCGTGTATTTGCGGTGAAATCAAGTCGGCATATATTG
CACACCACAACAGAGCGCGTGGCGGCAGACAGTGCCGGCCAACAGAGGAA
CCTAGTCCCTTAAGCACTTTTTTGCCCTACCGATGTATGTTCTTTGATCT
GTCGTGTTCTCATGGGGCGTGCGCGCACAAAGACAACGAGCTAGCAAACA
ACGAGTTGGGCCCGGGTCGCGTTTCAAACCAAGAGCACCGCGTGCCTACC
GCACATTTTCTACCACAGTCGAGGCAGTAAGCGACGGTAGTAGCACCCTT
GCTTTCGTTGCCCTTCCAGCGTTATGAGGCTGTGCAGCTGCTGTGTGTTG
CGCTGTCTGATGTAGAGACAGGTCAGTCGTTGCGTTCTGCTTGGTTAGGT
ATTCTCAACAGAATGGCACGATTTTTATTGATTCACTGGTGACTGCAGTG
TGGAAACAATACATCGAATCAAGCCGGCAGTTGCAAATGGTGTGTCTTTG
CGAATATATGTAACGCTGGTGCTGCTGTACAGGTACTACGTTTTGGTTGT
CGCAACCGTGTCTTGCATCAGGTCTTGCCCCCCTGAATCGCAGATAGACG
CCGATCGCATCGAGCTGAGATGGCGACAAGATAAAGATACCACCGACACA
GCAGTCAGAGTTGGTGCTGACCGTCGAGAACTATGTACAGAGGTTCAGGT
GTAGTGTCCCACCGGCCGGAAACGTCTTCGAATACGAGTTGAACAATTCA
ACAGCCACAGAACTAAGTGCGCGCACTGCTGTCTCTAGGTTGCGCATATT
ATGTTTTATCCCATCCTAAACCTTTTTGAAACTGAACGAATTGATTCCGG
ATACGCTAGGTGTGCAGCGATGGTTACGGCCAATCTCGACAATGTTAAGC
TAGAGGCGGCCGTGCTGGACCCGGACATAAGCGCCAGAGGCTTTGTGCTG
ACATGCTCGTCCACCGTGGCTGGACCCGGGGTGGAGCTCGAAATCGGTGT
CGGGGACAAGATGTATGACGTGAGTACTTTTTTTTCGGATCGTGTGGATG
TTTTGGATCGAGTTGTGGGAAATACGTCACGAAAGACAACCAACTCACAT
ATGAAAACAGAGCATTGATGTTGGGCAGGAAAGTGCGTATTTATTTGGTG
TCGTTGGAGCAATAACGACATACGAAGTATCAGCTTTTAAAAATATTCTC
GAAGCTTCTTCGCAAACGCACAAAACACGTTGGGTTACTTATGCAGAGAC
GGTGTTGTGAGATTTTCCCCGTCCGAACGTGTTTGACGAGCTATTTCACA
ATCAAGCATAGGCGCGGTGCCTTGATATCAACTCAGTATTGCAAACACGT
ACTCCGCTGCTGTACGTAGTGTTGGCCATTTGTCAGGTGGGCATGTTCTC
AAGCGAGCATGCGTTCTGCAACAATGAACCGTCTCTGTTAAGATGTCGAT
GGGCTATCTATCCCTTCTCATCCTCATCCACACACAACACGCACGCACAC
ATAGACACGACCACAGAAACCCGCAAACCCTGCATTTTCCGACGTTTCAG
GCGCAGTATGGTGAGTTCCGAAAAGGTCACGACGATGCGCAAAATTCCAA
GCCTGGAAAATGGAACCTGCCGTTTCCCGACGTTTCTGGAGCATGATCGC
TCTAGCGCTGGAGGGAATGTAGCCGTGTTAGGTTTGCGAATGTTGGCGAA
CGACAACGCGTATTGCCCGGACGAGAAGGAAGGGATTGTGGACGATTTCG
ACGAAGAAGTATGCTGTGGTTGGAAGGCGGGGAGGAACGTACATGCGTTT
TGGCCCACCTACACATAGCCAACAAGAACTTCAAGAATGTGACCAAAAGC
TTGTACGAGGAAGAAGGGGGGCTGAAGTGGGTCGGGCCACTAGCCTGAAA
AAGTTGTGGGGAATCGGGCGACGCACGCTTTGTTCGCTGAGGAAAGAGCG
CACGAAAGTTGATGACGTCAGGAGTAAAATATTGGTTCGGCTTTACAGCG
TCAATATGCTACGACTGCTGTTTGTGATATGGATCAATTTCGAAATCACA
ACGGAAGTGTGCTACATACATCAGTATTGAACCGTACAGTGTTCATCGAG
GGGCACCCCATTGACGTATTCTTGGCAGGAGGGTTGCCTTGATGCCGCAG
GAACTGATTGCAGTACGAGGTGTGAGAAGGAGTAAGACCGACTCTTTTGG
TCGGAATACTTGCTCCTTTTTCACCGGAAACATGGTTTTATTTTGGTCGA
TAGCCGTTGACCAGACCTAATGGGGGGGGTTATCTGCTGGAAATCGTAAA
TAAAATATCCTGGAGGTCGTGGATAATTTGAAAGCCCAGGATAATTGGGC
AATTATCCTGGGTGTTGGCTCTAAAATAATTTGGGAAAACCCCCTTGGAA
GGGTTTCCGGCAAAAATAAATACAGTCTCTCTCTCTGTGGTCCCCTCCCT
GTGGGTGAGTGTATTCGGAAGACCCAGCAGCAGCACAGCAGCAGTAGTGG
AGTAATGGATGACGAGACACTCTCCTCCCATTGACATTGGAATATATTGG
GAGGTCACGAGCAGCAGCAGCAGTGTGATCGATCGCCGTCTGTCTCGCAG
CGCCTGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig186:312612..323069+

>mRNA_P-littoralis_Contig186.114.1 ID=mRNA_P-littoralis_Contig186.114.1|Name=mRNA_P-littoralis_Contig186.114.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig186:312612..323069+ (Pylaiella littoralis U1_48)
ATGAGGGTGGGAATTGTGTCACTGCTGGGTATGCTGGCTGCACACGTTGA
CGGGAGTTCAGCTTTCTTGTTCCCGACATTCGGTCGAGCGCCAACCAGGA
CGGGAAACCTATGCGCGTACGATGTGACGGTAACGTTGCCAGACGGCGGT
GGGGTGCGGACAGTGGCGGCGAAGGAAGGCCAGACCTTGCTGGAAGCTCT
CGAGGCTCATAATATCGATGCTCCACACAGCTGCCGATCTGGATTATGCA
CGGAGTGTGCAGCGATGGTTACGGCCAATCTCGACAATGTTAAGCTAGAG
GCGGCCGTGCTGGACCCGGACATAAGCGCCAGAGGCTTTGTGCTGACATG
CTCGTCCACCGTGGCTGGACCCGGGGTGGAGCTCGAAATCGGTGTCGGGG
ACAAGATGTATGACGCGCAGTATGGTGAGTTCCGAAAAGGTCACGACGAT
GCGCAAAATTCCAAGCCTGGAAAATGGAACCTGCCGTTTCCCGACGTTTC
TGGAGCATGA
back to top