mRNA_P-littoralis_Contig186.113.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: D7FKU9_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU9_ECTSI) HSP 1 Score: 480 bits (1235), Expect = 1.010e-161 Identity = 270/374 (72.19%), Postives = 306/374 (81.82%), Query Frame = 1
Query: 259 RAAPLLALAPLILVASLASVANGSLGATSAVAGAPSISSAWTRRRDFRPSSIGLHSRQLLSLNKVARLRGGVKRAAVKADDEXXXXXXXXA-DGGPKVSSFVTGTFKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQFVKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLDDGDNPNFMEAPDEPEAPRGRKIGAGKKT-SKSKP---SSKGLGGGNKGKSKARPVPEFPSG-GGCS 1362
RAA LAL PL+LVASLASVA+GSLG +A A P+ISS WTRRRD PS +GLH R+ LSL+ VARLRGGVKRA VKADDE XXXX D GP S +TG FKNMPPATR Y+L+L+ ITAVDVSVGK IDS NTFS+DW RTVKGLELWRP TSL+YLGP+SM+WL+ VYF+TQHGTRLELVSGTA+QVIFLL VGSLLL +G L+GMP ++TSM+ AHTYVS+RMDP+ +QFQF++I MWT+PFAQMG AVLQAEG+ +AAIP+ VGI CGH+Y+F TVV PLMG KRRLGAPGWMKRRLD GDNPNFME PDEP APRGRKIGAGKKT SKSK S G G KG KARPVP+FP+ GGCS
Sbjct: 2 RAASPLALTPLLLVASLASVADGSLGINTAGARPPAISSVWTRRRDSHPSRVGLH-RKHLSLDLVARLRGGVKRATVKADDEDDDAXXXXXXDAGPGALSALTGVFKNMPPATRAYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKKTASKSKTRGTSKSGSSGSKKGGGKARPVPDFPTADGGCS 374
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: A0A6U1QM22_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QM22_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.900e-43 Identity = 100/270 (37.04%), Postives = 162/270 (60.00%), Query Frame = 1
Query: 394 DFRPSSIGLHSRQLLSLNK------VARLRGGVKRAAVKADDEXXXXXXXXADGGPKVSSFVTGTFKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQFVKISM--WTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLD 1179
D R +S+ + S+Q SL K + R+RGGVK+A K ++ + PK + + FKN+ PATR+Y+ + + +T V ++ ++D+ SL+ RT K LE+WRP TS ++GP SM +YF+ ++G LE GT Q V FL+ LL ++G +LG PF+++S+I A + SR+DPM ++ F+ +++ W +PFA MG+ +LQA+ ++ A IP++ G GH Y+F + PL+GG++ L AP ++KR LD
Sbjct: 28 DHRYTSLSILSKQSSSLAKNTFDLDILRIRGGVKKATPKEEEAE--------EDEPKKENAIAEAFKNVLPATRVYLSIALVLTVVHMT--GMVDAQQLLSLNLVRTFKNLEIWRPITSTCFMGPPSMQMAGNIYFLVKYGQELEANDGTLQHVFFLMTQLVLLSILGGVLGAPFMSSSLITAQLWCCSRLDPMSMVGVGFMGLAVPHWLLPFALMGIDILQAQ-SIAAGIPHVFGFLTGHFYHFFYRIYPLLGGRKLLEAPNFLKRMLD 286
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: A0A836CEG4_9STRA (Tricarboxylate carrier-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG4_9STRA) HSP 1 Score: 163 bits (412), Expect = 4.690e-39 Identity = 89/188 (47.34%), Postives = 123/188 (65.43%), Query Frame = 1
Query: 655 IDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQF-VKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLDDGDNP-NFMEAP 1212
+D+ F W RT+ LELWRP T+ LYLGPISM W + VYF+ +G+ LE V+GTA+Q++FLL + ++G L+ +P V+TS+I A Y S+R+DP+ + FQF +++ W +P+ V LQA G + AAIP+ VGI GH Y F LPLMGG+ L APGW++RR+D G NFME P
Sbjct: 7 VDAKEVFVASWPRTILNLELWRPLTAALYLGPISMHWATNVYFLITYGSHLEAVNGTAEQIVFLLTAFVCVTILGALISLPVVSTSLISACVYGSARVDPLGSVPFQFGLQMPRWLLPYGLAVVDFLQA-GKIEAAIPHAVGILAGHFYTFNRNTLPLMGGRDWLRAPGWLQRRVDGGGGATNFMEKP 193
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: W7TNT5_9STRA (Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNT5_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.020e-32 Identity = 91/248 (36.69%), Postives = 142/248 (57.26%), Query Frame = 1
Query: 451 VARLRGGV----KRAAVKADDEXXXXXXXXADGGPKVSSFVTGTFKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQF-VKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLD 1179
+AR RGGV K++ VKA+ V ++ P TR+++ + +T + + + +D A F LD RT+ ++WRPFT+ +LGP SM+W+S +YF+ Q+GT LE GTAQQ++FLLF +L ++G L+G+P + ++I A + R DP+ + + F +KI W +PF V +LQA+ N +AA+P +GI GH+YYFL V P MG + L AP W+ + L+
Sbjct: 93 LARARGGVQPAQKKSKVKANGPAAQGNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIII---LDPAY-FLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQ-NPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLN 335
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: A0A0G4FZ87_VITBC (Derlin n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FZ87_VITBC) HSP 1 Score: 137 bits (346), Expect = 5.900e-32 Identity = 76/204 (37.25%), Postives = 123/204 (60.29%), Query Frame = 1
Query: 571 FKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPM-MLMQFQFVKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLD 1179
+ N+ TR+Y+ + + ++ + + V + F+L+WERTV+ E WRPFT++ + G ++++ +S +YFM Q+G LE G+A+Q++F+L LL L+G +PF + A Y SR +P M+ F +++ W VPFAQ + VL A+ + AAIP+L+GI GH Y+F + P MGG L AP W++RR+D
Sbjct: 113 YTNIQLITRLYLSLALLLSLLQLKPLSV--DPSVFALEWERTVRSFEFWRPFTAMAFQGDLTLSMISTMYFMWQYGQSLEEAKGSAEQLVFMLTQVILLSLIGFRFQLPFTGRAFSSALVYACSRREPFAMVPVFLNIRVQYWKVPFAQAVIDVLSAQ-KINAAIPHLMGIATGHFYHFFNQIYPGMGGYAWLSAPRWLRRRID 313
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: A0A7S2GZ14_9STRA (Derlin n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GZ14_9STRA) HSP 1 Score: 131 bits (329), Expect = 7.830e-30 Identity = 92/275 (33.45%), Postives = 137/275 (49.82%), Query Frame = 1
Query: 424 SRQLLSLNKVARLRGGVKRAAVKADDEXXXXXXXXADGGPKVSSFVTGTFKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQF-VKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLDDGDNPNFMEAPDEPEAPRGRKI 1245
S LL N+ LRGG A+ P S + K++ P TR+Y+L + +T +++ +G F + T K +++WRPFTS ++LG M+ S +YF+ + G +E G AQQ+ F+LF +L L+G L+G P + S+I A Y SR PM M+ QF VKI W +P+ V +LQA+ A +P++VGIF GH+YYF V+P MGGKR + P + P A P + + K
Sbjct: 43 SSSLLQTNRGLTLRGG-----------------STAEAKPGAFSALNNVVKDVLPTTRMYLLAALFLTLLNL-MGI---PEELFLFEPTLTFKKMQIWRPFTSAIFLGKADMSMASNLYFLVKFGQEMERADGAAQQLTFILFETLILTLIGTLIGFPSFSRSVIAATIYCCSRRKPMDQMEVQFGVKIQFWLLPYVNALVDMLQAQSPA-ALMPHIVGIFAGHIYYFFAHVVPDMGGKRYIIPPKAFTQSTTKTQKPKARAAKKRPSSEKAAKT 295
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: A0A7S2M6W1_9STRA (Derlin (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M6W1_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.250e-29 Identity = 79/203 (38.92%), Postives = 119/203 (58.62%), Query Frame = 1
Query: 571 FKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQFVKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLD 1179
+K + P TRIYI ++ +T V + +G + S +LD RT+ GLELWRPFT+ +LGP S+ WL Y++ ++G+ LE GTAQ ++FLL L + G PF A S+I + +V SR P +++ + WT+P+ M VLQA GN AA+P+++GI GH+YYF V P +GG+ L P + +L+
Sbjct: 113 YKAILPLTRIYITLVGAVTLVGLLLGDEL-SQGLLALDPIRTMYGLELWRPFTAACFLGPPSIGWLMSAYYLFEYGSSLERAFGTAQHLLFLLIQIGFLSVCSAFFGQPFFAQSVITSMLHVLSRSMPNQKVKWLIFTVPYWTLPYGLMASDVLQA-GNAGAALPHVLGILSGHVYYFHKNVWPKLGGEDWLVPPQLLVNKLE 313
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: A0A1Z5K2V8_FISSO (Derlin n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2V8_FISSO) HSP 1 Score: 129 bits (325), Expect = 2.120e-29 Identity = 100/295 (33.90%), Postives = 158/295 (53.56%), Query Frame = 1
Query: 400 RPSSIGLHSRQLL--SLNKVARLRGGVKRAAVKADDEXXXXXXXXADGGPKVSSFVTGT---FKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQFVKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLP-LMGGKRRLGAPGWMKRRLDDGDNPNFMEAPDEP----EAPRGRKIGAG 1254
R ++ L S LL S +++ LRGG + V D P+ S V T +K + P TRIYI ++ T + + +G+ + + +LD R + GL+LWRP T+ +LGP S++WL Y++ Q+G+ LE GTAQ +FLL LL + L+G PF A SMI + +V SR P +++ + W++P+ M VLQA+ + MAA+P+++GI GH Y+F + P L G+ L AP ++ +RLD D E+ + + +GRK+G+G
Sbjct: 28 RTTANALSSGNLLLNSNHRLIELRGGASKRKVAQKTATGKRKVTKKDA-PEEKSAVADTLQKYKKILPLTRIYITLVGVATLLGLVLGEEL-TQGLLALDPMRVLYGLQLWRPITAATFLGPPSISWLLNGYYLFQYGSSLERAYGTAQHSVFLLSQLVLLSIFSTLVGQPFFANSMITSMLHVLSRSMPHQKVKWLVFTVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYHFHKHIWPKLEQGQDWLVAPEFLSKRLDPADKDAGKESVSKALKLRKKNKGRKLGSG 319
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: B8CBE6_THAPS (Derlin n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBE6_THAPS) HSP 1 Score: 122 bits (305), Expect = 7.850e-28 Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 1
Query: 661 SANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGLLLGMPFVATSMIVAHTYVSSRMDPMMLMQFQFVKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLD 1179
S +LD R + GLELWRPFT+ +LGP S+ WL Y++ ++G+ LE GT+Q ++FLL L + G PF A S+I + +V SR P +++ + WT+P+ M VLQA GN AA+P+++GI GHLYYF V P +GG+ L P +++R+LD
Sbjct: 17 SQGLLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMNAYYLFEYGSSLERAFGTSQHMLFLLLQIGFLSVFSAFFGQPFFAQSVITSMLHVLSRSMPNQQVKWLIFTVPYWTLPYGLMASDVLQA-GNAAAALPHVLGILSGHLYYFHKNVWPKIGGEDWLVPPMFLQRKLD 188
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Match: A0A7S2P7M0_9STRA (Derlin n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7M0_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.570e-26 Identity = 81/232 (34.91%), Postives = 131/232 (56.47%), Query Frame = 1
Query: 571 FKNMPPATRIYILMLIGITAVDVSVGKVIDSANTFSLDWERTVKGLELWRPFTSLLYLGPISMTWLSEVYFMTQHGTRLELVSGTAQQVIFLLFVGSLLLLVGL--LLGMPFVATSMIVAHTYVSSRMDPMMLMQFQFVKISMWTVPFAQMGVAVLQAEGNVMAAIPYLVGIFCGHLYYFLTVVLPLMGGKRRLGAPGWMKRRLDDGDNPNFMEAPDEPEAPRGRKIGAGKK 1260
+ +M P TR+YI ++ +T + + VG + + D R + GLELWRPFT+ +LGP S+ WL Y++ ++G+ LE G+AQ ++FLL G + LL L + PF +SMI A +V SR P +++ + W++P+ M VLQ++ +A+P+++GI GH Y+F + P +GG+ L AP ++ +RLD D + A +GRK G G+K
Sbjct: 98 YHSMLPLTRVYITVVGIVTLLGLIVGDE-GAQMLMAFDMNRVLHGLELWRPFTAAAFLGPPSIGWLMNGYYLFEYGSSLERAYGSAQFLLFLL--GQIFLLSWLSGIFAQPFFGSSMITAMLHVLSRSMPNQKVKWLIFTVPYWSLPYGLMASDVLQSQSPA-SALPHIIGILTGHFYHFHKFIWPKVGGEDWLVAPEFLSKRLD-ADAKRDVAKETISNALKGRKKGKGRK 324 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig186.113.1 >prot_P-littoralis_Contig186.113.1 ID=prot_P-littoralis_Contig186.113.1|Name=mRNA_P-littoralis_Contig186.113.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=375bp MLPQSRRAAPLLALAPLILVASLASVANGSLGATSAVAGAPSISSAWTRRback to top mRNA from alignment at P-littoralis_Contig186:300921..312540- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig186.113.1 ID=mRNA_P-littoralis_Contig186.113.1|Name=mRNA_P-littoralis_Contig186.113.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11620bp|location=Sequence derived from alignment at P-littoralis_Contig186:300921..312540- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig186:300921..312540- >mRNA_P-littoralis_Contig186.113.1 ID=mRNA_P-littoralis_Contig186.113.1|Name=mRNA_P-littoralis_Contig186.113.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1125bp|location=Sequence derived from alignment at P-littoralis_Contig186:300921..312540- (Pylaiella littoralis U1_48)back to top |