mRNA_P-littoralis_Contig186.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.97.1
Unique NamemRNA_P-littoralis_Contig186.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig186.97.1 vs. uniprot
Match: D7FKU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKU5_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 7.700e-61
Identity = 121/253 (47.83%), Postives = 163/253 (64.43%), Query Frame = 1 
Query:    1 VEWRFLAHALDDQPGFSTAWLRQQSLKKQADSREREYKEQALHGFAEEFGMTSLFPAHPAKSAQERDNGGGEXXXDANDNA--DLKNTPVPSRMAPDAPSFHLDRQVPTEAIIWLAPPIPTVAEASPLPGLLVALKKGGVQLDEFQDKGGSNKQSEDTGEWDGVDLMSAPCLQQHLGGGGLSCPYLEDGGPSTHDAHGQDHWY-HPPTAPKWIRPSTPPALLVYKPCLSVKIAEDIPSELEAAVDILETRANR 750
            VEWRFLAHA DD+PGFSTAWL+Q+SLK++AD REREY+   L GFA EFGMTS+FP+   +   + D+  G+   + +D+   + K     SR AP A   H D  +  E      PPI TV +   LP L+ ALKKGGV++D+ Q  GG ++ +EDTG WDGVDL S+PCLQQ++ G  +     ED   +  +   Q+  Y  P TA   +RPSTPP LLVYKPC+S+K+A+++PSEL+A   +LE +  R
Sbjct:    8 VEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPSRRLEQGVDEDDAEGDDVEEEHDHVVCNKKGPSTSSRTAPGASLPHRDLPILPED-----PPISTVVKTPALPALVAALKKGGVRVDDLQ--GGDSRHAEDTGSWDGVDLASSPCLQQYMVGDNI-----EDVESAAGNVGVQERVYGRPSTAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAMSKLLEMKEKR 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU5_ECTSI7.700e-6147.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:243961..248981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1434
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_001420.1
Cds size1434
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.97.1prot_P-littoralis_Contig186.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 243961..248981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789891.3109326-CDS-P-littoralis_Contig186:243960..2441761680789891.3109326-CDS-P-littoralis_Contig186:243960..244176Pylaiella littoralis U1_48CDSP-littoralis_Contig186 243961..244176 -
1680789891.322146-CDS-P-littoralis_Contig186:244465..2445601680789891.322146-CDS-P-littoralis_Contig186:244465..244560Pylaiella littoralis U1_48CDSP-littoralis_Contig186 244466..244560 -
1680789891.3303244-CDS-P-littoralis_Contig186:244928..2450421680789891.3303244-CDS-P-littoralis_Contig186:244928..245042Pylaiella littoralis U1_48CDSP-littoralis_Contig186 244929..245042 -
1680789891.3396482-CDS-P-littoralis_Contig186:245334..2454381680789891.3396482-CDS-P-littoralis_Contig186:245334..245438Pylaiella littoralis U1_48CDSP-littoralis_Contig186 245335..245438 -
1680789891.3506737-CDS-P-littoralis_Contig186:246840..2469961680789891.3506737-CDS-P-littoralis_Contig186:246840..246996Pylaiella littoralis U1_48CDSP-littoralis_Contig186 246841..246996 -
1680789891.3609617-CDS-P-littoralis_Contig186:247297..2473691680789891.3609617-CDS-P-littoralis_Contig186:247297..247369Pylaiella littoralis U1_48CDSP-littoralis_Contig186 247298..247369 -
1680789891.371604-CDS-P-littoralis_Contig186:247509..2477481680789891.371604-CDS-P-littoralis_Contig186:247509..247748Pylaiella littoralis U1_48CDSP-littoralis_Contig186 247510..247748 -
1680789891.3820512-CDS-P-littoralis_Contig186:248120..2482191680789891.3820512-CDS-P-littoralis_Contig186:248120..248219Pylaiella littoralis U1_48CDSP-littoralis_Contig186 248121..248219 -
1680789891.397584-CDS-P-littoralis_Contig186:248642..2489811680789891.397584-CDS-P-littoralis_Contig186:248642..248981Pylaiella littoralis U1_48CDSP-littoralis_Contig186 248643..248981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.97.1

>prot_P-littoralis_Contig186.97.1 ID=prot_P-littoralis_Contig186.97.1|Name=mRNA_P-littoralis_Contig186.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=478bp
VEWRFLAHALDDQPGFSTAWLRQQSLKKQADSREREYKEQALHGFAEEFG
MTSLFPAHPAKSAQERDNGGGEDDDDANDNADLKNTPVPSRMAPDAPSFH
LDRQVPTEAIIWLAPPIPTVAEASPLPGLLVALKKGGVQLDEFQDKGGSN
KQSEDTGEWDGVDLMSAPCLQQHLGGGGLSCPYLEDGGPSTHDAHGQDHW
YHPPTAPKWIRPSTPPALLVYKPCLSVKIAEDIPSELEAAVDILETRANR
LEKPPSTESARARPSNEEIEGNFFERSAKARLQIGLSMEQLSPKRPRGTR
PSFRTAKTATRIRLKEASSETPITSRSSHSTPREPVGRPTQYGKAWYVNP
ELWGLESSPQVNSAALAEEDDNAEGAKKLEQHTNMMKTTIPGLFSAIRFA
TYIRQQGARMPAHLESTDRAMKAEKARFRKDAQARRMGDKDLEGSPEDQE
VTSAAAPGASQKNRWRARVNAAVVLKKQ
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mRNA from alignment at P-littoralis_Contig186:243961..248981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.97.1 ID=mRNA_P-littoralis_Contig186.97.1|Name=mRNA_P-littoralis_Contig186.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5021bp|location=Sequence derived from alignment at P-littoralis_Contig186:243961..248981- (Pylaiella littoralis U1_48)
GTGGAATGGCGCTTCCTAGCACATGCCTTGGACGACCAACCCGGCTTCTC
CACGGCATGGCTGCGACAGCAAAGCCTAAAAAAACAGGCTGATTCCAGGG
AAAGAGAGTACAAAGAGCAGGCTTTGCATGGATTCGCCGAAGAGTTCGGC
ATGACCAGCCTTTTTCCTGCCCATCCTGCCAAAAGTGCACAAGAGCGTGA
TAATGGCGGCGGCGAAGATGACGACGACGCCAACGACAATGCGGACCTGA
AGAACACTCCTGTGCCCTCGCGTATGGCGCCGGACGCACCGTCATTTCAT
CTTGATCGTCAGGTACCGACGGAGGCGATAATTTGGCTCGTGTACAAGCA
CACAGTGGGACCAACAACAATTCTTAGACTGTGGAAACGGCGCTCGGGCC
GATGTTGATGGGATGCGTTGTGGTTGCACTTTGCGCTTGCCCTCCCTCGC
TCATGTCTTCCAGAAATTTTCCGTCTCCAGACTTTCCAATGGTACGTGTT
GTGGAAAGATATTTGCACCAGTCTTGGCTTCGTTTACAGTACCGGCCTCG
CGTTGCTGCAGCACGCTCGTATTCTGAGCAAAATACGTGTGTTGTCGTAG
CGGTGCTTGAAGAAACATAAATCGATATCCGCGGTATTTCATTGTGGTTC
GCACGGGAGTCGATTGTGTATTACCTCATACACTGCCTTCGCCATTGCCC
CTAATTCGACCCAGCCCCTCCGCACTACCGTTACTCATGACCCTGCCAAC
ACGCATCTCAAGGCACCGCCAATTCCCACCGTGGCGGAAGCATCTCCTCT
ACCAGGTCTCTTGGTTGCTCTCAAGAAAGGAGGCGTTCAGCTCGATGAAT
TTCAGGATAAGGTGTCCTGGAATGTTGTTTTGAGCTACTCCGCTTACATA
TCGGCGCTAAACGTAACACGGTATCGTAGCGGTAGGATTCCATCACGACG
AACCTGTCTCTAACCCTCCACATGGATATTTATACTATTAGCTCCATTAC
ACCAAGCCAGCAGCAACGACACACCTGACAGGTGGTACACAGCCGACGTT
GTGTGCACCCCCAGCGATCTCCTCCGTCAGTAAATGCGTGACATAAATGT
ACACTGGTATCATGTATACACCTCCTGCGATTTTTAGCGGAGCAGTAGTG
TGTTACTAGAGCACAACTTTCTGCAGGACAGTGGAACGCTAAGAGTGGTG
CCTCCGTATCCCGACCCTCCCTTTGAAATGTAGGGTGGAAGCAATAAGCA
ATCGGAGGACACAGGAGAATGGGACGGGGTAGACCTGATGTCCGCTCCTT
GTTTACAACAGCACCTGGGGGGGGGGGGACTATCCTGCCCGTACCTAGAG
GATGGTGGGCCCTCTACTCATGATGCACACGGCCAAGATCACTGGTACCA
TCCACCAACAGCGCCAAAATGGATCAGACCGAGCACTCCCCCAGCATTGT
TGGTATACAAGCCATGCTTGAGGTAGGCAGAGGAACCTTGAACTGGCAAT
TATCACCTGAAGTATACCCAATGATATTAGCCGAAGGAGTCGAGACAGGT
CAAACTCCTCTTTTATGTTATCTCGGTAGTCTCTTCGTGTGTTGCCACTG
CTGTTTTTGCAGCGTAAAAATTGCCGAGGACATACCGAGCGAACTGGAGG
CTGCGGTCGACATTTTGGAAACGAGGGCGAACCGGTGAGCGTTTTGCATC
CTACGGGTGGATCACGCGGTGGACGATAGGTAGAGGAGTCGAGGTTACGC
GCACTACCAGGAAAGGCTTCCAACGTCCAGCCTTTCGCCATTCTACACCT
TCCAGGCTGTACACCTTTAACCCAAACCACTTTGTGGTGTCCAGATATTC
CAGTTCAAAGTGTAAATACTAGGTTTGGGCGTGCACATTGTGCGGTACCT
CACTGCTGATGCTGTCGCCGCCAAAAACCTACCAACACCTTTGATTAGCT
CATTAAGTCTGGTGATCATTAATGAACTTGTACAGGCTAGAGAAACCACC
GTCAACAGAATCTGCTCGCGCCCGACCATCCAACGAAGAAATAGAGGGGA
ATTTCTTCGAAAGAAGCGCCAAGGCCAGACTACAGATTGGGCTATCGATG
GAACAACTATCGCCAAAACGCCCGAGAGGCACGCGTCCGAGGTAAACCGG
TCGCGCCCCTGAGGCATGCCAATTCCAAGGCTGTTTATCAACAGTCGGAG
AACCTTTCCTCTACGCAAGCCTGTTTGCCTTGTTAGACAAGCATCCATAA
GACCTCGAAGACAGCCTCCCTCCCGATACAAGTTACATTGAAATATTATA
AGGCTGATAGGCGACCCCGGAACTTACTTTATTCGAAGAGTGTGCGCCCT
GTGGGTATGTATTTGTTTTTGTTTCACAGGTGTAAGATTACGGTTCATGG
CCAACAACTCGTCGATAGTCATGTGTGGACTTGGAAGTCCGGGTGTTGGG
AGGCAGTTGTGTTGCGCCATTGCAAATACTAAAGATTCAAACAATCATGT
GCTCTTCGCGGCGGCGGAGTGTGCAAGGGCATACCAAACGAGGAGGTTTT
CAGGACAACCCCGGGGCATGTTTTTGACTAGCCAAAGACCCCTTTAAAAA
CATGCGCCCGAAAAGCGGAAGCGGGAACGCCCGAATTGCTCACCATCCGC
CCCCAAAGAGACTACAGTAGATCACCAACGTGTCGACTCCCATCCATCCT
TTTCTCTATTGATTTAGTATAAGTATAAGTACATTTTTTAAAAGCGAATG
GCCGCCTTCTCTATGTAGTTTGCCGAGGCAACAAGATGACGATACATCAG
GCCGGCAAAGACAATAACAGCGTAAAATACGATGTTAGCACACGCAACCC
TTGTTTGATCGCACACACAGCATAGAACCATCCATACACAGCTGTTGTGC
GCATTCCAGGGCCAAAAACTTACACTAGTAATATGTGTAGTCTCATTCCG
GGGGAACCTCCTTGTACCACCTGCCGGGTATCAACTAATTCTTAACACGA
AAGCGGTTAATCGGCCGCCAATTCATACACCCCGTGAAATAGCCGACATG
ATCGACGTGGGTGGACGGAACATCTCATACGACTTCTGTATGATGGTATC
TAACCATTCAGTATATGCCTGTTTCTAGGCAAGTGTCCCGGCACACAGAG
CACCCCAAACGCACTTCTGTGTAAGACCTACCTCTTATGACGAGATGTAA
TACGATCCCGTGGGGGAACAAGTGAGAAATACGCTCGGTTTTCAGTCGCG
GTGCGGCTCGCCTTCATAAGCATTTGACATGTTTGATTTGGTGGATCAGG
ATGGCCAACCCTGGTAGGTGCGAAGTTCGTACAGCATATCAAGTACCGTC
TTGGCTCAATGGCTCCGCAAGAAACATATACAGTATATGTGCGTATACCG
CTAGAGACGTTGTCGGTGCATGAATGTCAGTCAGCAAGATTTCATGTTTC
GATCTCCTCCATTGATATGCTTCAACTTTCCTTCCGTTCAAAGACGATGT
CATCTTTATTCGCCACCCGCGCTCCATTGCTTGCTGCTGATAGCTTTCGT
ACTGCGAAGACAGCGACGAGGATACGCCTCAAGGAAGCATCAAGCGAAAC
TCCCATCACGTCACGATCTTCCCACTCCACACCACGTGAACCGGTGGGTT
CATTTGTCCGCCTTGTCCAGCATGAATGATAAGTCACGCCCTGGTACATG
TTGTCAGAACTATGATATACTCCGGAGTATCGCTTTGATTCCCGACGGAA
ATCGATCTACTGATGTACTTGGTAGTATGGTTGCTCGGGACGCACGTCTG
TCTTGTCGTTGCGCCTCTCCCGTTCTCAATTTATCGTACTACCACACAGC
CTGTATCTGCTCTCTAGTACTCACTACGTCGCTTCCTGCGCTGGTTTTGT
GCGTCATTCCTCCCTTCCTGGTCGGGATACGACAGACAGGTCGCCCGACG
CAGTACGGCAAGGCCTGGTACGTAAATCCAGAGCTTTGGGGCTTAGAGTC
CTCACCCCAAGTCAACAGTGCCGCTCTTGCCGAAGAAGACGACAACGCAG
AAGGTGCGAACTACGTAGTTGCTTGGGACAAAAAGGGGCGTTCGTTCCCG
AACAAGTGCCGTGCTGGTTACAGCATATGCATCATCGTCTCTTTCGAGAA
AATCTTGTTTGTAGTAAAAGGACAAGAAGCTTTTCACCATGTTGATTCAA
CTTTTGGATTGTGGGGTAGTAGCTCCCCGATTTATCTCTTCCTTGCTGAC
CTTGCACCATCTATCTATCTATGCACACGTCTTTCCCCATTTGGACGACG
CGTTTCCCCCCCCCCTAGACTCGTCCCGGCCCTGCGTTGAACGCCAAACG
GTTGGGTTACCGCTGTCGAAATCGCCGCTTGAGTTTCTCACACCTCGTTG
TTTGGCAACACCACACCACAGGGGCGAAGAAGCTTGAGCAACACACCAAT
ATGATGAAGACTACTATTCCAGGCCTGTTCAGCGCCATTCGCTTCGCTAC
ATACATCCGCCAGCAGGTGACGCTACAGTAGTTGATGTGGTTGGTAGACG
TGGGCAACCAGAGGTCGCATCGAGTCTTACCGACCATGATCTGAATCAAA
GTGTTTACCCGCAGTTCATATGTGGGGAGATGAGGTGGGTTGGATATATT
CCGGTACTAATGACGATTCCCACAGCCGGACGTCGTGATACGGTACCATA
CGTCGTAAAACAAACAGAGCCGTCGCTAACGCACTGGACGCACCGGACCT
GCACGGCCCTGACCATCCCCGACGCTACTGCTGTCAACTTCAATCACCTG
TGTAGGGCGCTCGCATGCCGGCCCACCTTGAAAGCACCGATCGCGCAATG
AAAGCAGAGAAAGCAAGGTTTAGAAAAGACGCACAGGCTCGTCGAATGGG
TGATAAAGACCTGGAAGGCTCACCAGAAGACCAGGAGGTCACGAGTGCAG
CCGCACCTGGAGCGAGCCAGAAAAACAGATGGCGTGCGCGCGTCAATGCT
GCCGTGGTCTTGAAAAAACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig186:243961..248981-

>mRNA_P-littoralis_Contig186.97.1 ID=mRNA_P-littoralis_Contig186.97.1|Name=mRNA_P-littoralis_Contig186.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1434bp|location=Sequence derived from alignment at P-littoralis_Contig186:243961..248981- (Pylaiella littoralis U1_48)
GTGGAATGGCGCTTCCTAGCACATGCCTTGGACGACCAACCCGGCTTCTC
CACGGCATGGCTGCGACAGCAAAGCCTAAAAAAACAGGCTGATTCCAGGG
AAAGAGAGTACAAAGAGCAGGCTTTGCATGGATTCGCCGAAGAGTTCGGC
ATGACCAGCCTTTTTCCTGCCCATCCTGCCAAAAGTGCACAAGAGCGTGA
TAATGGCGGCGGCGAAGATGACGACGACGCCAACGACAATGCGGACCTGA
AGAACACTCCTGTGCCCTCGCGTATGGCGCCGGACGCACCGTCATTTCAT
CTTGATCGTCAGGTACCGACGGAGGCGATAATTTGGCTCGCACCGCCAAT
TCCCACCGTGGCGGAAGCATCTCCTCTACCAGGTCTCTTGGTTGCTCTCA
AGAAAGGAGGCGTTCAGCTCGATGAATTTCAGGATAAGGGTGGAAGCAAT
AAGCAATCGGAGGACACAGGAGAATGGGACGGGGTAGACCTGATGTCCGC
TCCTTGTTTACAACAGCACCTGGGGGGGGGGGGACTATCCTGCCCGTACC
TAGAGGATGGTGGGCCCTCTACTCATGATGCACACGGCCAAGATCACTGG
TACCATCCACCAACAGCGCCAAAATGGATCAGACCGAGCACTCCCCCAGC
ATTGTTGGTATACAAGCCATGCTTGAGCGTAAAAATTGCCGAGGACATAC
CGAGCGAACTGGAGGCTGCGGTCGACATTTTGGAAACGAGGGCGAACCGG
CTAGAGAAACCACCGTCAACAGAATCTGCTCGCGCCCGACCATCCAACGA
AGAAATAGAGGGGAATTTCTTCGAAAGAAGCGCCAAGGCCAGACTACAGA
TTGGGCTATCGATGGAACAACTATCGCCAAAACGCCCGAGAGGCACGCGT
CCGAGCTTTCGTACTGCGAAGACAGCGACGAGGATACGCCTCAAGGAAGC
ATCAAGCGAAACTCCCATCACGTCACGATCTTCCCACTCCACACCACGTG
AACCGGTGGGTCGCCCGACGCAGTACGGCAAGGCCTGGTACGTAAATCCA
GAGCTTTGGGGCTTAGAGTCCTCACCCCAAGTCAACAGTGCCGCTCTTGC
CGAAGAAGACGACAACGCAGAAGGGGCGAAGAAGCTTGAGCAACACACCA
ATATGATGAAGACTACTATTCCAGGCCTGTTCAGCGCCATTCGCTTCGCT
ACATACATCCGCCAGCAGGGCGCTCGCATGCCGGCCCACCTTGAAAGCAC
CGATCGCGCAATGAAAGCAGAGAAAGCAAGGTTTAGAAAAGACGCACAGG
CTCGTCGAATGGGTGATAAAGACCTGGAAGGCTCACCAGAAGACCAGGAG
GTCACGAGTGCAGCCGCACCTGGAGCGAGCCAGAAAAACAGATGGCGTGC
GCGCGTCAATGCTGCCGTGGTCTTGAAAAAACAG
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