mRNA_P-littoralis_Contig186.140.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.140.1
Unique NamemRNA_P-littoralis_Contig186.140.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:408656..409444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size789
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.5270047-UTR-P-littoralis_Contig186:408655..4087161680789889.5270047-UTR-P-littoralis_Contig186:408655..408716Pylaiella littoralis U1_48UTRP-littoralis_Contig186 408656..408716 -
1680789889.5522206-UTR-P-littoralis_Contig186:409118..4094441680789889.5522206-UTR-P-littoralis_Contig186:409118..409444Pylaiella littoralis U1_48UTRP-littoralis_Contig186 409119..409444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.543019-CDS-P-littoralis_Contig186:408716..4091181680789889.543019-CDS-P-littoralis_Contig186:408716..409118Pylaiella littoralis U1_48CDSP-littoralis_Contig186 408717..409118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.140.1prot_P-littoralis_Contig186.140.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 408717..409118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.140.1

>prot_P-littoralis_Contig186.140.1 ID=prot_P-littoralis_Contig186.140.1|Name=mRNA_P-littoralis_Contig186.140.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MRRSESSGVPQTSPVGDSGYHTDCCTLISILTFSLRTHKPVQHSFLEILQ
HLGLLCRLKLCPTPVNALQREIEVLKVRVLSTILSDGFWCKTPQELCFSY
GQSKLVTGNHTSNCHNLLMWCVSGVPCLDSSSG*
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mRNA from alignment at P-littoralis_Contig186:408656..409444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.140.1 ID=mRNA_P-littoralis_Contig186.140.1|Name=mRNA_P-littoralis_Contig186.140.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig186:408656..409444- (Pylaiella littoralis U1_48)
CCTTTTCACGCTTGCTCTCCTCAGTCGCACTCATGCCTCCTGCTACTGGC
ACCACCGTACCCAGTTGTTTCTGCCCCACATCTTTGGCAGCAGCTACTCC
ACCGCTCCGAGATTTCCGCCCTACAGTTTTTCCACTCCGGCCACCCCGTA
GCTTGGCTTTGGACTGCTTCTTCTGCCGTGCAACTCCAACCCCACTACCC
CGCTGCCGTTGTGCCCCCCCGTACTCCTCCTCTCGTTTTTCCCCGCCATC
CGTTCTCCCTCTTTTGGTCAAGGCCTACCCCTCAGCCGCGTCCCTCTCCC
TTTTCAGTCGACGTATACTATCATGAATGAGACGCTCAGAATCAAGCGGC
GTTCCGCAGACCAGTCCTGTAGGGGACTCCGGCTATCACACTGACTGCTG
TACGCTCATATCCATCCTCACATTCAGCCTTAGGACGCACAAACCTGTAC
AGCATAGTTTTTTGGAGATCTTACAGCACCTTGGACTCCTGTGTAGATTG
AAGCTGTGCCCAACCCCTGTGAATGCCTTGCAGCGCGAGATCGAGGTGCT
CAAAGTTAGAGTTTTGAGCACCATCTTGTCGGATGGATTTTGGTGCAAAA
CACCGCAGGAACTGTGCTTCAGTTACGGACAGAGCAAGCTCGTCACAGGC
AACCACACTTCAAATTGCCACAACCTACTGATGTGGTGTGTGAGTGGCGT
CCCATGCCTTGACAGCAGCAGCGGGTAGCCAGAAACCCTCCTGGAGGTAT
TCTTGGGAACGGTGTCTAGATGCCTGCAGCAGTCCGAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig186:408656..409444-

>mRNA_P-littoralis_Contig186.140.1 ID=mRNA_P-littoralis_Contig186.140.1|Name=mRNA_P-littoralis_Contig186.140.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig186:408656..409444- (Pylaiella littoralis U1_48)
ATGAGACGCTCAGAATCAAGCGGCGTTCCGCAGACCAGTCCTGTAGGGGA
CTCCGGCTATCACACTGACTGCTGTACGCTCATATCCATCCTCACATTCA
GCCTTAGGACGCACAAACCTGTACAGCATAGTTTTTTGGAGATCTTACAG
CACCTTGGACTCCTGTGTAGATTGAAGCTGTGCCCAACCCCTGTGAATGC
CTTGCAGCGCGAGATCGAGGTGCTCAAAGTTAGAGTTTTGAGCACCATCT
TGTCGGATGGATTTTGGTGCAAAACACCGCAGGAACTGTGCTTCAGTTAC
GGACAGAGCAAGCTCGTCACAGGCAACCACACTTCAAATTGCCACAACCT
ACTGATGTGGTGTGTGAGTGGCGTCCCATGCCTTGACAGCAGCAGCGGGT
AG
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