mRNA_P-littoralis_Contig186.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig186.14.1
Unique Name	mRNA_P-littoralis_Contig186.14.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5JQD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD3_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.140e-35
Identity = 66/94 (70.21%), Postives = 75/94 (79.79%), Query Frame = -3

Query:  119 MVTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 400
            +VTSVDTD W+IILLAMSTGKI  +G   V VT QRIVGGA KFL VNR + KI DL+DGSESAWP ADFQ W P  ++ VRLFVL+YLL+GCD
Sbjct:  230 LVTSVDTDLWIIILLAMSTGKILPYGIDKVDVTVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGWTPTADEKVRLFVLIYLLAGCD 323

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5LAE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAE2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.130e-33
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = -3

Query:  119 MVTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTAD--FQFWNPDENDNVRLFVLVYLLSGCD 400
            +VTSVDTD+WMIILLAMSTG +KA G  AV+VT   +VGG PK+  VNR FA I  L DG+ESAWPT D  FQ W PD+++ VRLFVLVYLL+GCD
Sbjct:  536 LVTSVDTDQWMIILLAMSTGFLKASGEGAVEVTVHEVVGGDPKYTWVNRVFAVISGLRDGNESAWPTTDSGFQGWIPDDDEKVRLFVLVYLLAGCD 631

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5KR74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR74_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.780e-33
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = -3

Query:  119 DEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 379
            D WMIILLAMSTGKI  +G   V VT QRIVGGA KFL VNR + KI DL+DGSESAWP ADFQ W P  ++ VRLFVL+YLL+GCD
Sbjct:    2 DLWMIILLAMSTGKIPPNGIDKVDVTVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGWIPTADEKVRLFVLIYLLAGCD 88

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.520e-33
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = -3

Query:  119 MVTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 400
            +VTSVDTD W+IILLAMSTGKI  +G   V +T QRIVGGA KFL VNR + KI DL+DGSESAWP ADFQ W P  ++ VRLFVL YLL+G D
Sbjct:  866 LVTSVDTDLWIIILLAMSTGKIPPNGIDKVDITVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGWIPTADEKVRLFVLTYLLAGSD 959

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5KI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI96_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.020e-31
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -3

Query:  119 VTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 397
            V+SVDTD WMIILLAM+TG ++  G  A+ VT Q+++GG  KFL +NR FA I +L+DGSESAWP   F+ W P +ND VRLFVL +L SGCD
Sbjct:   63 VSSVDTDLWMIILLAMTTGWLRPRGEGAIDVTVQKVLGGETKFLWMNRVFASICELQDGSESAWPLLTFRGWIPTDNDKVRLFVLTFLESGCD 155

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5L1K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.660e-30
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = -3

Query:  119 VTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 397
            V+SVDTD WMIILLAM+TG ++  G  AV VT Q++VGG  KFL +NRAFA I +L+ GSESAWP   F+ WNP  ND VRLFVL +L SGCD
Sbjct:  923 VSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRAFAGICELQGGSESAWPLLTFRGWNPKNNDKVRLFVLTFLESGCD 1015

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.220e-30
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = -3

Query:  119 VTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 397
            V+SVDTD WMIILLAM+TG ++  G  AV VT Q++VGG  KFL +NR FA I +L+DGSESAWP   F+ W P +ND VRLFVL +L SGCD
Sbjct:  495 VSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCD 587

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BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.080e-30
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = -3

Query:  119 VTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 397
            V+SVDTD WMIILLAM+TG ++  G  AV VT Q++VGG  KFL +NR FA I +L+DGSESAWP   F+ W P +ND VRLFVL +L SGCD
Sbjct:  584 VSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCD 676

[Close]

BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.200e-30
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = -3

Query:  119 VTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 397
            V+SVDTD WMIILLAM+TG ++  G  AV VT Q++VGG  KFL +NR FA I +L+DGSESAWP   F+ W P +ND VRLFVL +L SGCD
Sbjct: 1603 VSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCD 1695

[Close]

BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Match: A0A6H5KLM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM2_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.370e-30
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = -3

Query:  119 VTSVDTDEWMIILLAMSTGKIKAHGPAAVQVTAQRIVGGAPKFLLVNRAFAKIGDLEDGSESAWPTADFQFWNPDENDNVRLFVLVYLLSGCD 397
            V+S DTD WMIILL M+TG ++  G  AV VT Q++VGG  KF  VNR F  I  L+DGSESAWP   F+ W P  ND VRLFVL +L SGCD
Sbjct:   72 VSSADTDLWMIILLPMTTGWLRPRGEGAVDVTVQKVVGGETKFQWVNRVFTSICKLQDGSESAWPLLTFRGWIPTGNDKVRLFVLTFLESGCD 164

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig186.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JQD3_9PHAE	2.140e-35	70.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LAE2_9PHAE	1.130e-33	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KR74_9PHAE	4.780e-33	70.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L577_9PHAE	8.520e-33	68.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KI96_9PHAE	7.020e-31	60.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1K3_9PHAE	1.660e-30	63.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAK2_9PHAE	2.220e-30	62.37	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KTG2_9PHAE	3.080e-30	62.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6D9_9PHAE	3.200e-30	62.37	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLM2_9PHAE	7.370e-30	59.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig186	contig	P-littoralis_Contig186:63382..63783 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	402
Hectar predicted targeting category	other localisation
Exons	1
Cds size	312

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789889.4150734-UTR-P-littoralis_Contig186:63381..63460	1680789889.4150734-UTR-P-littoralis_Contig186:63381..63460	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig186 63382..63460 +
1680789889.43909-UTR-P-littoralis_Contig186:63772..63783	1680789889.43909-UTR-P-littoralis_Contig186:63772..63783	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig186 63773..63783 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789889.4281902-CDS-P-littoralis_Contig186:63460..63772	1680789889.4281902-CDS-P-littoralis_Contig186:63460..63772	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig186 63461..63772 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig186.14.1	prot_P-littoralis_Contig186.14.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig186 63461..63772 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig186:63382..63783+
coding sequence from alignment at P-littoralis_Contig186:63382..63783+

protein sequence of mRNA_P-littoralis_Contig186.14.1

>prot_P-littoralis_Contig186.14.1 ID=prot_P-littoralis_Contig186.14.1|Name=mRNA_P-littoralis_Contig186.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MLPEWKMKPPSVLVAARKEVDQDEQSDIVILIGVPELEVGRGPGRFTAVF
EITNLGERPVDQQELWGTSHNPLGGHLHRCGTMSLDFSRTHGQQDDHPLV
CVD*

mRNA from alignment at P-littoralis_Contig186:63382..63783+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig186.14.1 ID=mRNA_P-littoralis_Contig186.14.1|Name=mRNA_P-littoralis_Contig186.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig186:63382..63783+ (Pylaiella littoralis U1_48)
GTCGTTAGGTTAAAAAAAGGGAACAACATCATTCACTGACATTACGAAAC
ACATGCGTGTTGCCCTGTATTAACAAGAAATGTTACCTGAGTGGAAAATG
AAACCCCCCTCAGTTTTAGTCGCAGCCCGAAAGGAGGTAGACCAGGACGA
ACAATCGGACATTGTCATTCTCATCGGGGTTCCAGAACTGGAAGTCGGCC
GTGGGCCAGGCCGATTCACTGCCGTCTTCGAGATCACCAATCTTGGCGAA
CGCCCTGTTGACCAACAGGAACTTTGGGGCACCTCCCACAATCCTCTGGG
CGGTCACCTGCACCGCTGCGGGACCATGAGCCTTGATTTTTCCCGTACTC
ATGGCCAGCAGGATGATCATCCACTCGTCTGTGTCGACTGACGTTACCAT
CC

Coding sequence (CDS) from alignment at P-littoralis_Contig186:63382..63783+

>mRNA_P-littoralis_Contig186.14.1 ID=mRNA_P-littoralis_Contig186.14.1|Name=mRNA_P-littoralis_Contig186.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig186:63382..63783+ (Pylaiella littoralis U1_48)
ATGTTACCTGAGTGGAAAATGAAACCCCCCTCAGTTTTAGTCGCAGCCCG
AAAGGAGGTAGACCAGGACGAACAATCGGACATTGTCATTCTCATCGGGG
TTCCAGAACTGGAAGTCGGCCGTGGGCCAGGCCGATTCACTGCCGTCTTC
GAGATCACCAATCTTGGCGAACGCCCTGTTGACCAACAGGAACTTTGGGG
CACCTCCCACAATCCTCTGGGCGGTCACCTGCACCGCTGCGGGACCATGA
GCCTTGATTTTTCCCGTACTCATGGCCAGCAGGATGATCATCCACTCGTC
TGTGTCGACTGA