mRNA_P-littoralis_Contig186.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.132.1
Unique NamemRNA_P-littoralis_Contig186.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:372985..373838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons3
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.3425295-CDS-P-littoralis_Contig186:372984..3732621680789889.3425295-CDS-P-littoralis_Contig186:372984..373262Pylaiella littoralis U1_48CDSP-littoralis_Contig186 372985..373262 -
1680789889.3553267-CDS-P-littoralis_Contig186:373508..3735811680789889.3553267-CDS-P-littoralis_Contig186:373508..373581Pylaiella littoralis U1_48CDSP-littoralis_Contig186 373509..373581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.365759-UTR-P-littoralis_Contig186:373581..3737341680789889.365759-UTR-P-littoralis_Contig186:373581..373734Pylaiella littoralis U1_48UTRP-littoralis_Contig186 373582..373734 -
1680789889.379523-UTR-P-littoralis_Contig186:373763..3738381680789889.379523-UTR-P-littoralis_Contig186:373763..373838Pylaiella littoralis U1_48UTRP-littoralis_Contig186 373764..373838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.132.1prot_P-littoralis_Contig186.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 372985..373581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.132.1

>prot_P-littoralis_Contig186.132.1 ID=prot_P-littoralis_Contig186.132.1|Name=mRNA_P-littoralis_Contig186.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MGFGFIQPSPPPALDQSFLSEAWGAHGAFRLAGGRRLPLMSKQIRPVRVW
SAVPRPLFDFSSCAWGILHTVLYNVGRLRAPLKPTRLFRPFFVGCRVVPL
KCRQELGENREHQLKI*
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mRNA from alignment at P-littoralis_Contig186:372985..373838-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.132.1 ID=mRNA_P-littoralis_Contig186.132.1|Name=mRNA_P-littoralis_Contig186.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=854bp|location=Sequence derived from alignment at P-littoralis_Contig186:372985..373838- (Pylaiella littoralis U1_48)
GGGATTGAGAAAAAAAAATAAGAATTTGAGGCTGGGCCTTTCACGAAAAA
TAAAAAAAATGGTTTAGAAAAACAACTCAGACTGGGCGACAAGATAAGAA
AGACCTACAATGAGAAACACTAGGGTTAGACGAGTGTCAGGTGACAATGA
CGGCGAGAGCAACGACGAGGACAACGACGACTCGGATCGTTTGTCTCAGA
TTCACAACGAGGACGATCTGGCCCCGGGGGAGACCGAGATGGGCATGAGC
ATCCCGGATGGGTTTCGGCTTCATTCAGCCGTCTCCACCGCCGGCCCTAG
ATCAGTCGTTTTTAAGTGAAGCGTGGGGTGCTTGTCAAACTCGGACTGGG
GTGGTTCGGCGGGGTTCTAACTCGCAGAGCTCACCACGGATCGAGGGACA
ACTACGACTACCGCGTCACGCTGCATTCTGACGGAAGCACGAGCAGCATG
AAGTTGCCGTTGGAGTCGTATAGCACGGAGGATGTAGATGCCGCCGTTGG
GGCGTGGGTGCTGCTAGAGGTGGATCAAGAAGAGGGGGTGAGAAAGTCCA
GAAGGGCGACGACCCCCAATGTTCGCCACACGGAGCTTTCCGCTTAGCGG
GTGGGCGACGGTTACCTTTGATGTCTAAGCAAATACGGCCGGTCAGGGTT
TGGAGTGCGGTGCCTCGGCCTCTTTTTGATTTCAGTTCTTGCGCGTGGGG
TATACTGCACACAGTACTGTACAACGTTGGCAGGTTGCGAGCGCCGTTGA
AACCTACGCGTCTGTTTAGGCCTTTCTTTGTCGGTTGTCGAGTTGTACCG
CTGAAATGTCGTCAAGAGCTTGGAGAAAACAGGGAACATCAACTTAAAAT
ATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig186:372985..373838-

>mRNA_P-littoralis_Contig186.132.1 ID=mRNA_P-littoralis_Contig186.132.1|Name=mRNA_P-littoralis_Contig186.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig186:372985..373838- (Pylaiella littoralis U1_48)
ATGGGTTTCGGCTTCATTCAGCCGTCTCCACCGCCGGCCCTAGATCAGTC
GTTTTTAAGTGAAGCGTGGGGTGCACACGGAGCTTTCCGCTTAGCGGGTG
GGCGACGGTTACCTTTGATGTCTAAGCAAATACGGCCGGTCAGGGTTTGG
AGTGCGGTGCCTCGGCCTCTTTTTGATTTCAGTTCTTGCGCGTGGGGTAT
ACTGCACACAGTACTGTACAACGTTGGCAGGTTGCGAGCGCCGTTGAAAC
CTACGCGTCTGTTTAGGCCTTTCTTTGTCGGTTGTCGAGTTGTACCGCTG
AAATGTCGTCAAGAGCTTGGAGAAAACAGGGAACATCAACTTAAAATATG
A
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