mRNA_P-littoralis_Contig186.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.96.1
Unique NamemRNA_P-littoralis_Contig186.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:236751..239876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons3
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.271819-CDS-P-littoralis_Contig186:236750..2368261680789889.271819-CDS-P-littoralis_Contig186:236750..236826Pylaiella littoralis U1_48CDSP-littoralis_Contig186 236751..236826 +
1680789889.281177-CDS-P-littoralis_Contig186:238994..2392121680789889.281177-CDS-P-littoralis_Contig186:238994..239212Pylaiella littoralis U1_48CDSP-littoralis_Contig186 238995..239212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.290692-UTR-P-littoralis_Contig186:239212..2392261680789889.290692-UTR-P-littoralis_Contig186:239212..239226Pylaiella littoralis U1_48UTRP-littoralis_Contig186 239213..239226 +
1680789889.303655-UTR-P-littoralis_Contig186:239762..2398761680789889.303655-UTR-P-littoralis_Contig186:239762..239876Pylaiella littoralis U1_48UTRP-littoralis_Contig186 239763..239876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.96.1prot_P-littoralis_Contig186.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 236751..239212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.96.1

>prot_P-littoralis_Contig186.96.1 ID=prot_P-littoralis_Contig186.96.1|Name=mRNA_P-littoralis_Contig186.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
FEAVRQGTYTSLCSWPASQYKCRTVCHGARCVLTALWMCQVLRVDLEIWN
KKESCDGRCSRRTGSKPPPAPSLVSTPDPAKGIGNRKRKGTLDVYND*
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mRNA from alignment at P-littoralis_Contig186:236751..239876+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.96.1 ID=mRNA_P-littoralis_Contig186.96.1|Name=mRNA_P-littoralis_Contig186.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3126bp|location=Sequence derived from alignment at P-littoralis_Contig186:236751..239876+ (Pylaiella littoralis U1_48)
TTCGAGGCAGTTCGACAAGGAACTTACACTTCGCTTTGCTCGTGGCCTGC
TTCTCAATACAAGTGCAGGACCGTGTGTAAGTCAATGCGCCTTTAATTTC
ACGAATAGGCCGACGTATCTACACTTCTACTGTGTTGCTAACTCACTGTT
GTTGGTGGCTTCGTTGTGTTGTGTGGATGCGTGGTTGAATGCTGCTAGGG
GGAGTTTGTTTGTGGTTTTACTTCCATATGTTACCGTGTGTGTTGCTCTT
TTGTGCTTCTTGGCATCTACTGCGAGGGGCTGGTCTTGCTGCAAGTGCGG
GACCGCGTAGATGAGCGTACATTTAATATTTAACGAAGAGGCCGACGTAT
TTACACTGTTGCTACGTACTGTTGATGGTTTGGTCGACGGCAACACGCGG
CAGCTAGGATTTCATTGCCGGCGTTGTATGAAGTACCGCAACATATTTTT
TTCATCAAATATACCTCGCCTACTTAACTACTGCTCCGGAACTAAATATT
CCGATGCTGCTGTTGATAGAACCCCGTTCGGTGGTCGATCTTGTTGCCCG
GTTTTTAAGGGAAATGAAGCCTAATGCCTTGAAAACAATTTCCCCCGCCG
GCGCATCCTGCGGGGGCCCTCACCAGTCGGGGGGCCATTGGTGGCTCCGC
CAAACGTGGTTCCGCCGCCTCGCTTCGCTCGGATGCCGATATTTTGCCGA
TATATCAGCAAAATATCGGCATATCGGCTGCGCCGATTTGCAGATATATC
TAGTATCTACACAACCTACTGACCTGTGGTCTCTGGGAATGACGGGCATG
CTGTGGTGGGCAGGATGTGGCGGACGTGACTGAGCTCTCCGTGTTGCTCA
TCACCATCTCTACAAGCAACAAGGGGGCGCCTATATAGAAGAATCGTTCC
GTTTTTTCTACAACATGAGCCAGTGCCCGGATGCCCTGAGCCCCTTATTA
CATCAATTTGTTTGTGACATATCCCGTAAACCTGCTCGTCCATCGGCTGT
TGTTCCGATTCCGAATCGGCCTAATGATTTTAGAAAAGCATGTCCAACGA
GCTACACGCCCTCAAAGGTTCAGCCAATTTGGTCAATTCTCTGAGTGCGC
ACAAGTGGTCCAAATGTTTTTTTTAACACGAAACAAAACTGATAATTTGA
AAGTAGGTTGAGGTAGACACACCACTGTTCTTGCCTTATTCGATTTTTGG
CAAATTTTGCAGGTCTATCATCAGCGTTGCGAAGTGCAGATCCCGAATTC
TGTAATTTTTTTCTGACAAGAACACCCACCGAGCTCTATACCCTCCGGAA
TTTATTCGATTTGGTCAAATCAACGAGTGCACACATTTATTTGCTCTTAA
GTTTTCTCTCGAGTCCCGAATTCCGCAATTCTGTTCTGACAAGTACCGCC
ACCGAGCGCTGTACCCTCCGGGATTAATTTGATTTGATCGATTGAAGAGT
GCGCACGTGAAGAGTGAGCACGTTTACTCTGAAGTTTGTCTCCCGACAGC
TGAAAACGAGCTCTGCTGGCGACACAGAAAAAAAAATGAAGCGAACTGAT
GTGGGCATAAAAAAAAAGTCCCATACCCACGAATGTGTCTACTCTGCTCT
GTCTCCTGCTGTCTTCACTTCTCTATCTTACATGTATCAATTGAGAAAAA
TAATTTTGATCTGCTCCTCCTTTGTTTCCGGGTAGCCGGTCGATACCCGG
CGAGTACCCGAAAAACCCTTGATTTTCGGGTTACGGATCGGGTACCCGGC
CAAACTCGGGATACCCGAACGTTCGGGCTACCCGCGGACTCCAACCCAAC
TATATGAATACATCTCCTCTTGTGCTTCAGACTTGACTGTTGCGTTGTTC
AAAAATAAATCCTAAATTATGTTTTGGACAGGCACAATTCTCTACCGAGG
TCTTGCAACCCATGGAATGTATTATTATAGACAACGCTGCCTCGTTGTTT
TGATATTTGCAGCAGGGCCACAAAGGACTCTTATAGATGCGGCAAAAATT
TACATGTGTACACATGCAAATGGCATAAGCTCTGTCGTGTCAGGAGTTTG
CGTTCAATACACCACGAAATATCGTTGGATTCAAAGCAATTATTGGCCTC
TTTCAAATCGTGATAGACGACGACGTAGGAGCTTCATCACAGAACACGAA
GCGGTCATCGCTTGTGGTAACGAAGTCACTTGTCAGTCATCACATGAAAC
AGACGCCTCTCCTCTGCCCTGCTTCATCTTTCATGGTATCTCAGGTCACG
GAGCACGTTGCGTTTTAACGGCGTTATGGATGTGTCAAGTCCTTCGGGTG
GACCTCGAGATCTGGAACAAGAAGGAATCGTGCGACGGTCGGTGTTCGAG
GCGAACGGGTTCGAAGCCGCCACCCGCGCCAAGTCTTGTGTCGACACCGG
ATCCCGCGAAAGGAATTGGCAACAGAAAGAGGAAGGGGACGCTGGATGTT
TACAACGACTAAGTATTTAACAACGCGTGAGTCACTTGCTGAGTTAACTT
GTGGTCCCATATGATACTCTGCTTCTATATCGTTGCGCTTAAAACTTCGG
ATTCCACCATCATTTCGTCAAATAGGTAAATATAACTACCTACACCATAG
GAAAATATTGATAAGCAGCGACACAGCAGTAAAATATGGCAGACACCGAG
AGAGACAAATATTGATAAGCAGAGACACGGGAAAATATGGCGCACAATCG
TTGACCCAAGCGTGTCTCTGCCGGTGTGGTATCTCATTCTCTCTCTCTCG
TCCTTCGGGCTGGAAGTAACATTATGCAATTCGAAAGAACAAACAGACAA
AATACTTGTTGTGTTTCCTCTTTCTGCACTTCGCGCTGTAAATCCCACCC
CTTCTGCGTTGCGTTTAGCCCAGTCTCATCTGTGCGTCTCGAATACCATG
CTTCAGCGCAATTAATTTGGCTCGGGTGTCTCTCGGCTGTGTGTAGGTAG
ACCTATTGTTGTATCTCGCTTCGATTTTAACTTAAGCTTGGTGTGCTACC
TCCACGCATCAGGGTCTCCACACTACTCGGATCGCTCACCAAAGCGTGGG
CCCGCGAGCGCAAGGCCACCCCCCAGACCATCCAAAGAAAGACGCCAACA
AGATCTTTCACCCATACTTGGTCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig186:236751..239876+

>mRNA_P-littoralis_Contig186.96.1 ID=mRNA_P-littoralis_Contig186.96.1|Name=mRNA_P-littoralis_Contig186.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig186:236751..239876+ (Pylaiella littoralis U1_48)
TTCGAGGCAGTTCGACAAGGAACTTACACTTCGCTTTGCTCGTGGCCTGC
TTCTCAATACAAGTGCAGGACCGTGTGTCACGGAGCACGTTGCGTTTTAA
CGGCGTTATGGATGTGTCAAGTCCTTCGGGTGGACCTCGAGATCTGGAAC
AAGAAGGAATCGTGCGACGGTCGGTGTTCGAGGCGAACGGGTTCGAAGCC
GCCACCCGCGCCAAGTCTTGTGTCGACACCGGATCCCGCGAAAGGAATTG
GCAACAGAAAGAGGAAGGGGACGCTGGATGTTTACAACGACTAA
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