mRNA_P-littoralis_Contig186.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.92.1
Unique NamemRNA_P-littoralis_Contig186.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:228466..229594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons2
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.214345-CDS-P-littoralis_Contig186:228465..2285451680789889.214345-CDS-P-littoralis_Contig186:228465..228545Pylaiella littoralis U1_48CDSP-littoralis_Contig186 228466..228545 -
1680789889.2236736-CDS-P-littoralis_Contig186:229151..2295781680789889.2236736-CDS-P-littoralis_Contig186:229151..229578Pylaiella littoralis U1_48CDSP-littoralis_Contig186 229152..229578 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789889.2324762-UTR-P-littoralis_Contig186:229578..2295941680789889.2324762-UTR-P-littoralis_Contig186:229578..229594Pylaiella littoralis U1_48UTRP-littoralis_Contig186 229579..229594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.92.1prot_P-littoralis_Contig186.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 228466..229578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.92.1

>prot_P-littoralis_Contig186.92.1 ID=prot_P-littoralis_Contig186.92.1|Name=mRNA_P-littoralis_Contig186.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MADPTGGGAAQPVSQPTEPSSRLIIGGVPVQVVGAGKGRSKQTSAIWKHV
VEFTPATASGKNIKCMVKHKLPAVNNVPAREVTCGFLMKYVRADASKGIS
SGGTNGMWKHFRDKHKHIREEEMPKSSHSTEGKKRKASLLAGVQQAQASA
GKGPMDKHMITSLGKAQQE
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mRNA from alignment at P-littoralis_Contig186:228466..229594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.92.1 ID=mRNA_P-littoralis_Contig186.92.1|Name=mRNA_P-littoralis_Contig186.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-littoralis_Contig186:228466..229594- (Pylaiella littoralis U1_48)
CACGAACACACACTCTATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGC
CTGTGTCACAGCCAACAGAGCCATCCAGTCGGTTGATAATTGGCGGTGTT
CCCGTACAAGTGGTCGGTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGC
GATTTGGAAGCATGTCGTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGA
ACATCAAGTGCATGGTCAAACACAAGCTTCCCGCGGTGAACAACGTTCCA
GCACGCGAAGTGACGTGCGGCTTCTTGATGAAGTACGTCCGAGCTGACGC
CAGCAAAGGGATCTCCAGCGGAGGGACGAACGGCATGTGGAAGCACTTCC
GCGACAAGCACAAACACATCCGCGAGGAAGAGATGCCAAAGAGCTCGCAC
AGCACCGAAGGGAAAAAGAGGAAGGCGAGCCTCCTTGCCGGAGGTAAGAG
TGCGAAGAGTGAGGGCTACTGCAGTATCGCCTGCGTTAGCAGTGGTTGGG
TGTGATTTGTGTGGTGCTTTAGTTTGATGTGTACCACATGCGTCGCACAC
GCTGTGCGCTGTTTTGTTTTTTTTTGTAGACTTTGGACTTTTCAAACTTT
TGACCGATCATACGGAAGACAACACCCCCAAAAGACATTTGTTTTTTTTA
AACTCACTTGCTTGTTGCTCTCAAAACACCGATCTTGGACGTTTTTGAGT
TAGAGTCTGGACTATGCGTACACAACAACCTCCTGGAACACCCTAACGCT
GTTTCACATTTTAGATTTTAGCGTTTTTTGGTTGAACGCAGATATATAGA
TAAACTTAAATATTTTTATATTTTTACTGTTTATTTTGTACCGGATTTGT
ATTTTGTTTCCCACGGTAGTTATGTGTTGCGGCCTGTGCATTTTTTATCA
TTTTTTAACACTTCATTGCTACCTGTACTTGTATCACTTTTCATTTTGTG
TTAAATTCAAGCCCGTGCTGACCACACACCGTGTTGGTTCTCTCTCGCTC
TCTTGTCTCTTTCAACCCTTTCCCCGCCTCCCTGTCTTGTGTGGATCAGT
CCAGCAAGCACAAGCGAGCGCAGGCAAAGGGCCGATGGACAAACACATGA
TCACTTCGCTTGGCAAGGCCCAACAAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig186:228466..229594-

>mRNA_P-littoralis_Contig186.92.1 ID=mRNA_P-littoralis_Contig186.92.1|Name=mRNA_P-littoralis_Contig186.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig186:228466..229594- (Pylaiella littoralis U1_48)
ATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGCCTGTGTCACAGCCAAC
AGAGCCATCCAGTCGGTTGATAATTGGCGGTGTTCCCGTACAAGTGGTCG
GTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGCGATTTGGAAGCATGTC
GTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGAACATCAAGTGCATGGT
CAAACACAAGCTTCCCGCGGTGAACAACGTTCCAGCACGCGAAGTGACGT
GCGGCTTCTTGATGAAGTACGTCCGAGCTGACGCCAGCAAAGGGATCTCC
AGCGGAGGGACGAACGGCATGTGGAAGCACTTCCGCGACAAGCACAAACA
CATCCGCGAGGAAGAGATGCCAAAGAGCTCGCACAGCACCGAAGGGAAAA
AGAGGAAGGCGAGCCTCCTTGCCGGAGTCCAGCAAGCACAAGCGAGCGCA
GGCAAAGGGCCGATGGACAAACACATGATCACTTCGCTTGGCAAGGCCCA
ACAAGAA
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