mRNA_P-littoralis_Contig185.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig185.20.1
Unique NamemRNA_P-littoralis_Contig185.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: D8LK09_ECTSI (OrfB_Zn_ribbon domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK09_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.140e-40
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = 1
Query:  514 QKEHSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSNKRMFSYLSNYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNIMVRCASE 993
            +K  +K   I K +K +   K+K  L +A YR  ARAK L  D H+KTIK L+D YDVI++GKI +Q LMS   Q+ +NK  F +LS++  RQRL  K  ++   VV QDESYT+Q C +CG LKKD+G A+ Y C  C L + RD++   NI++RCASE
Sbjct:    2 EKLRTKSYGILKAIKDSKDDKKKNNLGRACYRVNARAKDLVTDFHFKTIKFLMDNYDVIILGKINVQQLMSMKSQNKTNKDHFRFLSHFLFRQRLLMKTSITPHAVVIQDESYTTQTCVKCGVLKKDVGDAEVYKCSRCNLCMGRDISGASNILLRCASE 161          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: UPI0011DFF219 (RNA-guided endonuclease TnpB family protein n=1 Tax=Scytonema hofmannii TaxID=34078 RepID=UPI0011DFF219)

HSP 1 Score: 108 bits (270), Expect = 4.240e-23
Identity = 93/317 (29.34%), Postives = 152/317 (47.95%), Query Frame = 1
Query:   37 KSTPADVRKSATRDLVKNFKSARAAYKARLQKAKEPFEVKFKSRRLASDSIELEKKSISFENNMVSFFGTSKHALEVRTSEVFSEESGRHKPSQSCRIAYCFGRWYIVIPDKVRVDKADINTPAEARVIGIDPGLRTAFTCSSSSGDVLELGIDTWFRFQKEHSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSNK--RMFSYLSNYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNIMVR 981
            K TP  ++  A +D  K   +A++ YK     ++    V F+SR+    S  + K ++S +    +  G      EV   E   +  G       CR+   +G +Y+ IP    V+   + T  + RV+ +DPG+RT FT  S S     LG +   + QK   K   +   +  T   + K +LKKA  R R + K+L  +L  K+I+ L+D +D+I++       +  K  +   +K  R    LS+Y  +Q +K+KA   NKVV++ +E+YTS+     G + K+LG AK       G  +DRD+N    I +R
Sbjct:   81 KDTPYQIKSIAIKDACKAVSNAKSKYKNGGGISR----VNFRSRKDPKQSCYIPKSAVSEKGIYHTILG------EVCYREFLPKNFG------DCRLVLAYGDYYLTIP----VESPQLETENQGRVVALDPGIRTFFTFLSESSFGW-LGKNANVKIQKLCFKLDELCSGISKTR-GQLKRRLKKAANRLRGKIKNLVDELQKKSIRFLVDNFDIILLPTFETSQMSKKARRRIRSKSVRQMLTLSHYKFKQFIKHKAFEHNKVVLDVNEAYTSKTVSWSGEIVKNLGGAKIIKSSSTGQTMDRDLNGARGIFLR 375          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: A0A139X085_9CYAN (Transposase n=1 Tax=Scytonema hofmannii PCC 7110 TaxID=128403 RepID=A0A139X085_9CYAN)

HSP 1 Score: 108 bits (270), Expect = 1.330e-22
Identity = 93/317 (29.34%), Postives = 152/317 (47.95%), Query Frame = 1
Query:   37 KSTPADVRKSATRDLVKNFKSARAAYKARLQKAKEPFEVKFKSRRLASDSIELEKKSISFENNMVSFFGTSKHALEVRTSEVFSEESGRHKPSQSCRIAYCFGRWYIVIPDKVRVDKADINTPAEARVIGIDPGLRTAFTCSSSSGDVLELGIDTWFRFQKEHSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSNK--RMFSYLSNYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNIMVR 981
            K TP  ++  A +D  K   +A++ YK     ++    V F+SR+    S  + K ++S +    +  G      EV   E   +  G       CR+   +G +Y+ IP    V+   + T  + RV+ +DPG+RT FT  S S     LG +   + QK   K   +   +  T   + K +LKKA  R R + K+L  +L  K+I+ L+D +D+I++       +  K  +   +K  R    LS+Y  +Q +K+KA   NKVV++ +E+YTS+     G + K+LG AK       G  +DRD+N    I +R
Sbjct:  219 KDTPYQIKSIAIKDACKAVSNAKSKYKNGGGISR----VNFRSRKDPKQSCYIPKSAVSEKGIYHTILG------EVCYREFLPKNFG------DCRLVLAYGDYYLTIP----VESPQLETENQGRVVALDPGIRTFFTFLSESSFGW-LGKNANVKIQKLCFKLDELCSGISKTR-GQLKRRLKKAANRLRGKIKNLVDELQKKSIRFLVDNFDIILLPTFETSQMSKKARRRIRSKSVRQMLTLSHYKFKQFIKHKAFEHNKVVLDVNEAYTSKTVSWSGEIVKNLGGAKIIKSSSTGQTMDRDLNGARGIFLR 513          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: A0A146M4Q7_LYGHE (Putative transposase R104 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146M4Q7_LYGHE)

HSP 1 Score: 101 bits (252), Expect = 1.140e-20
Identity = 92/320 (28.75%), Postives = 152/320 (47.50%), Query Frame = 1
Query:   43 TPADVRKSATRDLVKNFKSARAAYKARLQKAKEPFEVKFKSRRLASDSIELEKKSISFENNMVSFFGTSKHALEVRTSEVFSEESGRHKPSQSCRIA---YCFGRWYIVIPDKVRVDKADINTPAEARVIGIDPGLRTAFTCSSSSGDVLELGIDTWFRFQKE-HSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSNKRMFSYL--SNYSLRQRLKYKAG-LSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNIMVR 981
            TP D+R  A  D++K       AY       ++ F V+FK +R   +SI L  K          F  T      +++SE   E+       Q  R+     C  R  ++ P+  R +K D    + ARVI +DPG+RT  T    SG + E+G +   R  +  H+     +K  +     +++ K ++A  R R + ++L  + H KT + L + YD+I++     Q + ++  +   +K   S L  S+Y  R+RL  K    ++  V+  DES+TS+ C  CG+L + LG +K + C  C    DRD N+  NI++R
Sbjct:   49 TPYDIRDEAMNDVLK-------AYATNFAMKRKEFTVRFKKKRAEHNSITLLAKHWK---KCGVFHPTEWGKEPLKSSEPLPEKLSYDARLQRTRLGEFYLCIPRPLVLRPENQRPEKDD--GVSGARVIALDPGVRTFCTGYDPSGKIFEIGKNDIGRVNRLCHALDKLQSKWTQKDVRHRKRYKYQRAARRIRKKIRNLVGEFHKKTSRWLCESYDLILLPHFETQQMTTRATRRIGSKSARSMLTWSHYGFRKRLVEKTREFTHCKVILCDESFTSKTCSECGNLNERLGPSKIFKCPMCKQESDRDFNASRNILLR 356          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: A0A0W8DZT6_PHYNI (Transposase IS605 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DZT6_PHYNI)

HSP 1 Score: 99.0 bits (245), Expect = 1.060e-19
Identity = 97/331 (29.31%), Postives = 147/331 (44.41%), Query Frame = 1
Query:   46 PADVRKSATRDLVKNFKSARAAYKARLQKAKEPF--EVKFKSRRLASDSIELEKKSISFENNMVSF----FGTSKHA----LEVRTSEVFSEESGRHKPSQSCRIAYCFGRWYIVIPDKVRVDKADINTPAEARVIGIDPGLRTAFTCSSSSGDVLELGIDTWFRF--------QKEHSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQ-STSNKRMFSYLSNYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNIMVR 981
            P +V  S  RD  K  K +RA +KA  +K K+    E++FKS++  S SIE   + I   N +V F    FG SK+      E      FS    R +            ++Y+ IP +V+V K   +T    R   IDPG+R+  T     G  L LG+D    +         +  S++T    K K     KR TK+         R K + AD+H K    L   Y  +++       + S+  + S+   R     S+Y  +  L YK   S   ++E +E YT++ C  CG +   + + K + C  C LVIDRDVN+  NI ++
Sbjct:   53 PEEVMDSTYRDFTKALKLSRALFKALKKKDKKTSFPELRFKSKKDNSSSIEFRNRGIKSANGLVQFKPRYFGFSKNEGFLIKEKMPDLQFSVRLLRTRDE----------KFYLCIP-RVKVFKQTTST----RTCAIDPGVRSFITMYDQDG--LTLGVDDANEYIFRRCLTIDRLISRRTRETNKRKRYRMGKRLTKMFN-------RVKAMIADMHHKVSSWLSKNYKQVLLPSFQTSDMTSRQKRISSKTSRAILTWSHYKFKMMLAYKMERSGGRMIECEEHYTTKTCSCCGRINYGITSQKVFDCNHCNLVIDRDVNAARNIFLK 359          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: A0A650DC66_9VIRU (Putative transposase n=1 Tax=Moumouvirus maliensis TaxID=2682469 RepID=A0A650DC66_9VIRU)

HSP 1 Score: 81.6 bits (200), Expect = 1.390e-13
Identity = 61/190 (32.11%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  418 VIGIDPGLRTAFTCSSSSGDVLELGIDTWFRFQKEHSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSK-TGQ-STSNKRMFSYLSNYSLRQRLKYKA---GLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNI 972
            V GIDPG+RT  T  S   D  ++  +  F   K+H K+     ++     S++  K +K+  +   +  +   D+H+K  K+L  R+ +I +G I    ++SK TG  + S +R+   LS++  R+ L Y+A   G   K+V E    +T++ C +CG++K ++G +K Y C +CGL  DRD+N+  NI
Sbjct:  232 VCGIDPGVRTFLTVYSKK-DCYQICNNPDF---KKHYKRIDRLNEIFINEESRQTRKYQKSIGKMFDKINNKVKDMHFKVAKYLCCRFQIIKLGNISTNKIVSKETGNINKSTRRLLYSLSHFRFREILGYQAEKYGCKLKIVSEY---FTTKTCSKCGNIK-NVGKSKVYKCNKCGLFADRDINAAKNI 413          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: A0A3G4ZSA1_9VIRU (Transposase n=1 Tax=Edafosvirus sp. TaxID=2487765 RepID=A0A3G4ZSA1_9VIRU)

HSP 1 Score: 81.3 bits (199), Expect = 2.520e-13
Identity = 42/116 (36.21%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  640 DLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSNKRMFSYLS--NYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNIMVR 981
            DLH+KT  +L + YD+IVIG++ +QS++SK  ++ S +   S L+   Y  R RL+ K         + DE+ T++ C  CG +   +G A+ Y CR+C + I RD N   NI+++
Sbjct:  384 DLHFKTCNYLCNNYDIIVIGRMNVQSIVSKKNKTISQETKESLLALRQYEFRTRLESKCEERGVKYYDTDEADTTRTCGCCGGINNKVGGAEIYECRKCKMKIGRDYNGARNILLK 499          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: K7YXM8_9VIRU (Putative transposase n=1 Tax=Megavirus courdo11 TaxID=1128140 RepID=K7YXM8_9VIRU)

HSP 1 Score: 78.6 bits (192), Expect = 1.530e-12
Identity = 58/190 (30.53%), Postives = 94/190 (49.47%), Query Frame = 1
Query:  418 VIGIDPGLRTAFTCSSSSGDVLELGIDTWFRFQKEHSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSK-TGQ-STSNKRMFSYLSNYSLRQRLKYKA---GLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNI 972
            V GIDPG+RT  T  S            + ++ K   +   I    +     K K  + K + +   + K    D+H+K  K+L  R+ ++ +G I    ++SK TG    S +R+   LS++  R+ L ++A   G   K+V E     T++ C  CG+ KKD+G +K Y C +C L +DRD+N+  NI
Sbjct:  232 VCGIDPGVRTFLTVYSKKDCYQICNNPNFKKYYKRMDRLNEIFTSEESCQTRKYKKSIGKMFDKINNKVK----DMHFKVAKYLCSRFQILKLGNISTNKIVSKETGNIGKSTRRLLYSLSHFRFREILTHQAEKYGCKLKIVSEY---LTTKTCSNCGN-KKDVGKSKVYECNKCELYVDRDINAAKNI 413          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: A0A141ZJS9_9VIRU (Transposase n=5 Tax=Faustovirus TaxID=1477405 RepID=A0A141ZJS9_9VIRU)

HSP 1 Score: 77.4 bits (189), Expect = 4.690e-12
Identity = 81/336 (24.11%), Postives = 159/336 (47.32%), Query Frame = 1
Query:   34 MKSTPADVRKSATRDLVKNFKSARAAYKARLQKAKEPFEVKFKSR-----RLASDSIELE-KKSISFENNMVSFFGTSKHALEVRTSEVFSEESGRHKPSQSCR--------IAYCFGRWYIVIPDKVRVDKADINTPAEARVIGIDPGLRTAFTCSSSSGDVLELGIDTW-FRFQKEHSKKTSIAKKMKGTTCSKRKTKLKKAWYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSNKRMFSYLSNYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLGAAKTYLCRECGLVIDRDVNSGYNIMVRCASEH 996
            +K  P+D RK A R+ +KN+K+       +L +    F +K K +     R+ +++I+L   K + F+  ++          ++R + + +    R KP  +          I Y  G +YI++    +V++ ++       +  IDPG+    T     G V   G+  +  R +  + +   I +  +  T +KRK ++     + RA+  ++           L ++Y VI++ K+GI+ + +K  +   N+++++ LS+Y   + +K  A  +   V+   ESYTS+ C  CG+L+      +T+ CR C  V DRD N+  NI++R  + +
Sbjct:  166 IKILPSDSRKEALREAIKNYKTCLTHLNKKLCRR---FLLKHKRKDATTFRIKTNAIKLTGNKLVIFKKRILDLIEAGNLNKDLRYATLNNGNLRRLKPYLNASGNPTAYPLINYSHGNYYIIVSGNRKVEQCNVKK----EICAIDPGVVNFHTIYD--GVVGYEGVKLYETRLEGINQRIDKITQHKQNFTGAKRK-RMHLRELKLRAKVSNIVYQFRHTLASKLCNKYKVILLPKLGIKQV-AKHLRRQVNRKLYA-LSHYKFNELIKQIATRTGTTVIHCLESYTSKTCGNCGNLQT-CDVDRTFRCRACYYVADRDENACKNILIRSLNNY 488          
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Match: UPI00101BDC09 (RNA-guided endonuclease TnpB family protein n=1 Tax=Anaerophilus nitritogenes TaxID=2498136 RepID=UPI00101BDC09)

HSP 1 Score: 71.2 bits (173), Expect = 4.000e-10
Identity = 62/203 (30.54%), Postives = 103/203 (50.74%), Query Frame = 1
Query:  385 KADINTPAEARVIGIDPGLRTAFTCSSSSGDVLELGIDTWFRFQKEHSKKTSIAKKMKGTTC--SKRKTKLKKAWYRC-RARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSNKRMFSYLSNYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLGAAK-TYLCRECGLVIDRDVNSGYNIMVR 981
            +A+    + +  + ID G+    T  + +G+V+E+      R+ K  +KKT   + M+ T    SKR  KL     R    R K     +H  T K+L+     +++G +  + ++ K+  +  N+ +         +  L YKA L +  VV  +E+YTS+ C  CG+ K+D+G +K TY C ECG+ +DRD+NS  NI  R
Sbjct:  174 EANKKENSNSTTLAIDLGISKLVTGINQNGEVIEIVNP---RYDKYWNKKTDKVRSMRDTKKKGSKRYKKLTNTLNRLYENRRKQQEHFIHTIT-KYLVLNNKELILGDLSQEQMVKKSNLTKLNRSIKENWGLGKFKTFLTYKAKLQDVNVVYINEAYTSKTCSNCGN-KQDMGLSKRTYTC-ECGMTLDRDINSSINIFNR 370          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig185.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK09_ECTSI2.140e-4048.13OrfB_Zn_ribbon domain-containing protein n=1 Tax=E... [more]
UPI0011DFF2194.240e-2329.34RNA-guided endonuclease TnpB family protein n=1 Ta... [more]
A0A139X085_9CYAN1.330e-2229.34Transposase n=1 Tax=Scytonema hofmannii PCC 7110 T... [more]
A0A146M4Q7_LYGHE1.140e-2028.75Putative transposase R104 n=2 Tax=Lygus hesperus T... [more]
A0A0W8DZT6_PHYNI1.060e-1929.31Transposase IS605 n=1 Tax=Phytophthora nicotianae ... [more]
A0A650DC66_9VIRU1.390e-1332.11Putative transposase n=1 Tax=Moumouvirus maliensis... [more]
A0A3G4ZSA1_9VIRU2.520e-1336.21Transposase n=1 Tax=Edafosvirus sp. TaxID=2487765 ... [more]
K7YXM8_9VIRU1.530e-1230.53Putative transposase n=1 Tax=Megavirus courdo11 Ta... [more]
A0A141ZJS9_9VIRU4.690e-1224.11Transposase n=5 Tax=Faustovirus TaxID=1477405 RepI... [more]
UPI00101BDC094.000e-1030.54RNA-guided endonuclease TnpB family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig185contigP-littoralis_Contig185:133242..134309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4950.XP_003682942.1
PFAMsHTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon
Model size996
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.68e-29
EggNOG OGsCOG0675@1|root,2S61S@2759|Eukaryota,3A84T@33154|Opisthokonta,3P6H3@4751|Fungi,3R2Z2@4890|Ascomycota,3RW77@4891|Saccharomycetes,3S28D@4893|Saccharomycetaceae
DescriptionProbable transposase
Cds size996
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789886.7475765-CDS-P-littoralis_Contig185:133241..1341001680789886.7475765-CDS-P-littoralis_Contig185:133241..134100Pylaiella littoralis U1_48CDSP-littoralis_Contig185 133242..134100 -
1680789886.7617464-CDS-P-littoralis_Contig185:134172..1343091680789886.7617464-CDS-P-littoralis_Contig185:134172..134309Pylaiella littoralis U1_48CDSP-littoralis_Contig185 134173..134309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig185.20.1prot_P-littoralis_Contig185.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig185 133242..134309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig185.20.1

>prot_P-littoralis_Contig185.20.1 ID=prot_P-littoralis_Contig185.20.1|Name=mRNA_P-littoralis_Contig185.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=332bp
RETDKNSRLERMKSTPADVRKSATRDLVKNFKSARAAYKARLQKAKEPFE
VKFKSRRLASDSIELEKKSISFENNMVSFFGTSKHALEVRTSEVFSEESG
RHKPSQSCRIAYCFGRWYIVIPDKVRVDKADINTPAEARVIGIDPGLRTA
FTCSSSSGDVLELGIDTWFRFQKEHSKKTSIAKKMKGTTCSKRKTKLKKA
WYRCRARAKHLAADLHWKTIKHLLDRYDVIVIGKIGIQSLMSKTGQSTSN
KRMFSYLSNYSLRQRLKYKAGLSNKVVVEQDESYTSQACFRCGHLKKDLG
AAKTYLCRECGLVIDRDVNSGYNIMVRCASEH
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mRNA from alignment at P-littoralis_Contig185:133242..134309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig185.20.1 ID=mRNA_P-littoralis_Contig185.20.1|Name=mRNA_P-littoralis_Contig185.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1068bp|location=Sequence derived from alignment at P-littoralis_Contig185:133242..134309- (Pylaiella littoralis U1_48)
CGTGAAACGGACAAGAATTCGAGACTAGAACGCATGAAGTCGACACCAGC TGATGTCAGGAAGTCGGCCACGCGAGACCTTGTGAAGAACTTCAAGAGCG CTCGTGCTGCGTACAAAGCCCGGCTACAGAAAGCCAAGTTCGGGAAGGCG AGAGTAAAGAAGATACGCAAGTCAGGAAAGTTCAAGGGGCGGCGTCGCTA CAAATAGAGGGAGCCGTTCGAGGTGAAATTCAAGTCCCGGCGTCTCGCAT CCGATTCCATTGAGCTGGAAAAAAAATCAATCTCGTTTGAGAACAACATG GTTTCCTTCTTCGGAACGAGCAAGCACGCGTTGGAAGTTCGTACGAGCGA GGTGTTTTCGGAAGAATCTGGTCGACATAAACCGTCTCAGAGCTGTAGGA TAGCCTACTGTTTTGGGAGGTGGTACATCGTCATACCCGACAAAGTACGA GTCGACAAGGCGGATATCAACACACCCGCCGAAGCACGAGTCATCGGGAT AGACCCTGGACTTCGAACTGCCTTTACATGTTCTTCTAGCTCCGGTGACG TCTTGGAGCTAGGAATCGACACTTGGTTCCGCTTCCAGAAAGAACACTCC AAGAAAACCTCCATCGCCAAGAAGATGAAGGGTACAACATGCTCGAAGAG AAAGACAAAGCTAAAAAAAGCTTGGTACCGCTGTCGAGCGAGAGCCAAGC ATCTCGCAGCCGACCTACACTGGAAAACCATCAAGCATCTCCTGGATAGA TACGACGTCATTGTGATAGGGAAGATCGGCATCCAGTCTCTCATGTCCAA GACAGGACAGTCTACCAGCAATAAGAGGATGTTCTCGTACTTGAGCAACT ACTCTTTACGACAAAGGCTGAAGTATAAAGCTGGGCTTTCCAACAAAGTA GTGGTTGAACAGGATGAGTCGTACACGTCCCAGGCATGTTTCCGATGTGG CCACCTTAAGAAGGACCTTGGTGCGGCAAAGACTTATCTCTGTAGAGAGT GTGGACTTGTGATAGATCGGGATGTTAATTCTGGGTACAACATCATGGTT CGCTGTGCATCCGAGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig185:133242..134309-

>mRNA_P-littoralis_Contig185.20.1 ID=mRNA_P-littoralis_Contig185.20.1|Name=mRNA_P-littoralis_Contig185.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=996bp|location=Sequence derived from alignment at P-littoralis_Contig185:133242..134309- (Pylaiella littoralis U1_48)
CGTGAAACGGACAAGAATTCGAGACTAGAACGCATGAAGTCGACACCAGC
TGATGTCAGGAAGTCGGCCACGCGAGACCTTGTGAAGAACTTCAAGAGCG
CTCGTGCTGCGTACAAAGCCCGGCTACAGAAAGCCAAGGAGCCGTTCGAG
GTGAAATTCAAGTCCCGGCGTCTCGCATCCGATTCCATTGAGCTGGAAAA
AAAATCAATCTCGTTTGAGAACAACATGGTTTCCTTCTTCGGAACGAGCA
AGCACGCGTTGGAAGTTCGTACGAGCGAGGTGTTTTCGGAAGAATCTGGT
CGACATAAACCGTCTCAGAGCTGTAGGATAGCCTACTGTTTTGGGAGGTG
GTACATCGTCATACCCGACAAAGTACGAGTCGACAAGGCGGATATCAACA
CACCCGCCGAAGCACGAGTCATCGGGATAGACCCTGGACTTCGAACTGCC
TTTACATGTTCTTCTAGCTCCGGTGACGTCTTGGAGCTAGGAATCGACAC
TTGGTTCCGCTTCCAGAAAGAACACTCCAAGAAAACCTCCATCGCCAAGA
AGATGAAGGGTACAACATGCTCGAAGAGAAAGACAAAGCTAAAAAAAGCT
TGGTACCGCTGTCGAGCGAGAGCCAAGCATCTCGCAGCCGACCTACACTG
GAAAACCATCAAGCATCTCCTGGATAGATACGACGTCATTGTGATAGGGA
AGATCGGCATCCAGTCTCTCATGTCCAAGACAGGACAGTCTACCAGCAAT
AAGAGGATGTTCTCGTACTTGAGCAACTACTCTTTACGACAAAGGCTGAA
GTATAAAGCTGGGCTTTCCAACAAAGTAGTGGTTGAACAGGATGAGTCGT
ACACGTCCCAGGCATGTTTCCGATGTGGCCACCTTAAGAAGGACCTTGGT
GCGGCAAAGACTTATCTCTGTAGAGAGTGTGGACTTGTGATAGATCGGGA
TGTTAATTCTGGGTACAACATCATGGTTCGCTGTGCATCCGAGCAC
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