mRNA_P-littoralis_Contig185.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig185.9.1
Unique NamemRNA_P-littoralis_Contig185.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig185.9.1 vs. uniprot
Match: D7G2E5_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E5_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.180e-15
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  136 MWFWAHVGFIHTLGRLALDDTPTHLPTRDIFEFLSAQDCVNF 261
            MWFWAH+GFI+T+GRL +DDT T LP RDIF FLSAQDC+NF
Sbjct:    1 MWFWAHIGFIYTVGRLPIDDTATPLPARDIFTFLSAQDCINF 42
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BLAST of mRNA_P-littoralis_Contig185.9.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-12
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   52 LRLKERIARKNRALAFLQLRTAAALHSQMWFWAHVGFIHTLGRLALDDTPTHLPTRDIFEFLSAQDCVNF 261
            LR+++RIARK RAL  +Q + + +L++ MWF +H   I+TLGRLA+DD PT    R +  F S QDCV F
Sbjct:   50 LRIRDRIARKKRALLPMQWQQSYSLYTSMWFASHFAVIYTLGRLAIDDIPTGAARRHVDNFFSPQDCVEF 119
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BLAST of mRNA_P-littoralis_Contig185.9.1 vs. uniprot
Match: A0A6H5JK48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK48_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.610e-8
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  100 LQLRTAAALHSQMWFWAHVGFIHTLGRLALDDTPTHLPTRDIFEFLSAQDCVNF 261
            +Q + + + ++ MWF ++V  I+TLGRLA+DD PT    RD+  F S QDCV F
Sbjct:    1 MQWQQSCSRYTSMWFASYVAVIYTLGRLAIDDIPTGAARRDVDNFFSPQDCVEF 54
[Close]
BLAST of mRNA_P-littoralis_Contig185.9.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 8.070e-5
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:  136 MWFWAHVGFIH-TLGRLALDDTPTHLPTRDIFEFLSAQDCVNF 261
            MWF +HV  I+ TLG LA+DD PT    RD+  F S QDCV F
Sbjct:    1 MWFASHVAVIYITLGLLAIDDIPTGAARRDVDNFFSPQDCVEF 43
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig185.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2E5_ECTSI4.180e-1576.19DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JS57_9PHAE1.090e-1250.00DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5JK48_9PHAE2.610e-846.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM46_9PHAE8.070e-555.81DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig185contigP-littoralis_Contig185:80320..80581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2E5
PFAMsDDE_Tnp_4
Model size262
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue6.86e-16
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789886.4772618-CDS-P-littoralis_Contig185:80319..805801680789886.4772618-CDS-P-littoralis_Contig185:80319..80580Pylaiella littoralis U1_48CDSP-littoralis_Contig185 80320..80580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig185.9.1prot_P-littoralis_Contig185.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig185 80320..80580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig185.9.1

>prot_P-littoralis_Contig185.9.1 ID=prot_P-littoralis_Contig185.9.1|Name=mRNA_P-littoralis_Contig185.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
RKAALLFQSRGCVIMARLRLKERIARKNRALAFLQLRTAAALHSQMWFWA
HVGFIHTLGRLALDDTPTHLPTRDIFEFLSAQDCVNF
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mRNA from alignment at P-littoralis_Contig185:80320..80581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig185.9.1 ID=mRNA_P-littoralis_Contig185.9.1|Name=mRNA_P-littoralis_Contig185.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=262bp|location=Sequence derived from alignment at P-littoralis_Contig185:80320..80581+ (Pylaiella littoralis U1_48)
CGCAAGGCGGCGCTTTTGTTTCAGTCACGCGGCTGTGTTATCATGGCACG
GCTACGATTGAAGGAGAGGATCGCACGCAAAAACCGTGCGCTTGCCTTCC
TCCAGCTTCGCACGGCGGCCGCCCTTCATTCTCAGATGTGGTTTTGGGCG
CACGTCGGATTCATCCACACACTCGGTAGGCTCGCGCTTGACGACACCCC
GACCCATTTGCCAACGAGAGACATCTTCGAGTTCTTGAGCGCCCAGGACT
GCGTCAACTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig185:80320..80581+

>mRNA_P-littoralis_Contig185.9.1 ID=mRNA_P-littoralis_Contig185.9.1|Name=mRNA_P-littoralis_Contig185.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig185:80320..80581+ (Pylaiella littoralis U1_48)
CGCAAGGCGGCGCTTTTGTTTCAGTCACGCGGCTGTGTTATCATGGCACG
GCTACGATTGAAGGAGAGGATCGCACGCAAAAACCGTGCGCTTGCCTTCC
TCCAGCTTCGCACGGCGGCCGCCCTTCATTCTCAGATGTGGTTTTGGGCG
CACGTCGGATTCATCCACACACTCGGTAGGCTCGCGCTTGACGACACCCC
GACCCATTTGCCAACGAGAGACATCTTCGAGTTCTTGAGCGCCCAGGACT
GCGTCAACTTC
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