mRNA_P-littoralis_Contig184.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.63.1
Unique NamemRNA_P-littoralis_Contig184.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig184.63.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.790e-7
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    7 SGDAQRARDVAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGG 156
            +GDA+   D+ + +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G
Sbjct:  270 AGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSG 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.790e-749.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:185654..185947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size295
Hectar predicted targeting categoryother localisation
Exons1
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.8838449-CDS-P-littoralis_Contig184:185653..1859471680789884.8838449-CDS-P-littoralis_Contig184:185653..185947Pylaiella littoralis U1_48CDSP-littoralis_Contig184 185654..185947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.63.1prot_P-littoralis_Contig184.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 185654..185947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.63.1

>prot_P-littoralis_Contig184.63.1 ID=prot_P-littoralis_Contig184.63.1|Name=mRNA_P-littoralis_Contig184.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
GASGDAQRARDVAKFGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVS
GGGKTGAAATAAVEPGGAGVGSAAKAHGLGRHDLANLDGAGGGAGGQQ
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mRNA from alignment at P-littoralis_Contig184:185654..185947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.63.1 ID=mRNA_P-littoralis_Contig184.63.1|Name=mRNA_P-littoralis_Contig184.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig184:185654..185947+ (Pylaiella littoralis U1_48)
GGGGCAAGTGGAGATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGA
CAGGCCCGACGACTGGATCAATCCCTTCAGCCTCGCCTTCGTGTTGTTCG
GGCGGCCCGCCGGCGAGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCT
GGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGG
TGCGGGCGTTGGTTCTGCGGCGAAAGCCCATGGGCTGGGCAGGCACGACC
TGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:185654..185947+

>mRNA_P-littoralis_Contig184.63.1 ID=mRNA_P-littoralis_Contig184.63.1|Name=mRNA_P-littoralis_Contig184.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig184:185654..185947+ (Pylaiella littoralis U1_48)
GGGGCAAGTGGAGATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGA
CAGGCCCGACGACTGGATCAATCCCTTCAGCCTCGCCTTCGTGTTGTTCG
GGCGGCCCGCCGGCGAGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCT
GGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGG
TGCGGGCGTTGGTTCTGCGGCGAAAGCCCATGGGCTGGGCAGGCACGACC
TGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAGCAA
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