mRNA_P-littoralis_Contig184.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.53.1
Unique NamemRNA_P-littoralis_Contig184.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:143042..144065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1026
Hectar predicted targeting categoryother localisation
Exons1
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.798039-CDS-P-littoralis_Contig184:143041..1438241680789884.798039-CDS-P-littoralis_Contig184:143041..143824Pylaiella littoralis U1_48CDSP-littoralis_Contig184 143042..143824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.8075361-UTR-P-littoralis_Contig184:143824..1440651680789884.8075361-UTR-P-littoralis_Contig184:143824..144065Pylaiella littoralis U1_48UTRP-littoralis_Contig184 143825..144065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.53.1prot_P-littoralis_Contig184.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 143042..143824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.53.1

>prot_P-littoralis_Contig184.53.1 ID=prot_P-littoralis_Contig184.53.1|Name=mRNA_P-littoralis_Contig184.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=261bp
ATGAVEDSSNHESRDGGGRGGGAAVAGGYGGSNHPGRGWGWRRRRLRRRS
RFCGQLGWVTGKTQPAPNLGNQRVATPRSSGEIRAWSTKLSEAQQQGLRS
TSLLTAAVTAYNVEYFTQALTPGAVQTISAPTSSEKTRKRSRTVAKEIGD
RAITQQIEAFNQRATGTEPSSASTPPRAAPRVRHYVAAAKERVNSGAPLR
RDEISQISDTLAYAYLRSLDLPTTGNRDAKRQRLMDWFEQNDLSLYKPPK
ATPSINEVSI*
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mRNA from alignment at P-littoralis_Contig184:143042..144065+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.53.1 ID=mRNA_P-littoralis_Contig184.53.1|Name=mRNA_P-littoralis_Contig184.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-littoralis_Contig184:143042..144065+ (Pylaiella littoralis U1_48)
GCGACCGGTGCCGTTGAGGACAGCAGCAACCATGAAAGCCGAGACGGGGG
CGGGCGCGGCGGCGGTGCGGCCGTTGCGGGCGGGTACGGCGGTAGCAACC
ATCCCGGCCGGGGGTGGGGGTGGCGCCGGCGCCGGCTCCGGCGGCGAAGT
CGTTTCTGCGGTCAACTAGGGTGGGTCACGGGTAAAACACAGCCGGCACC
CAACCTTGGAAACCAAAGGGTTGCGACCCCTCGAAGTTCCGGAGAGATAC
GGGCGTGGTCCACCAAGTTATCAGAAGCGCAGCAGCAGGGGCTAAGATCA
ACATCGTTGCTAACAGCGGCGGTTACGGCGTACAACGTCGAGTACTTTAC
CCAAGCGTTGACGCCTGGCGCGGTTCAGACCATTAGCGCGCCTACTTCGT
CGGAGAAGACGCGCAAGAGGTCGAGGACAGTGGCGAAAGAAATTGGAGAT
CGAGCGATCACCCAGCAGATAGAAGCCTTCAACCAGAGAGCAACCGGCAC
GGAGCCCTCCTCGGCCAGTACACCACCGCGCGCTGCCCCTCGCGTTCGTC
ACTATGTAGCTGCCGCTAAGGAAAGAGTCAACAGCGGGGCCCCTTTGAGG
CGTGACGAGATATCCCAAATTTCGGACACGTTGGCCTACGCGTACTTGAG
ATCCCTGGACCTGCCCACGACTGGCAATAGGGACGCCAAGCGCCAACGCC
TGATGGACTGGTTCGAACAAAACGATTTGTCACTGTACAAGCCGCCCAAG
GCCACGCCGTCAATAAATGAAGTTTCGATCTGATTCTTGTTGCAATATAA
TGGCGGTCGGTCGGTGTAAGTGTAATTATTCGTTGTTGAAATGGTGTACA
GTTCGTATCATGCATTATCGGTGGTATTACACTCGGGTAAGGGCACTCGT
ATTTTTTAGTGTTCGTGCGTGTTGCGTGTGTGTATTTTTGTTTTTGCCCT
TTGTACTCAAGGAGGTTGACTCCGAAGATTGTCGTGGGGTGTGTTGCTGG
TGAACTATATGAAATAGGCGATTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:143042..144065+

>mRNA_P-littoralis_Contig184.53.1 ID=mRNA_P-littoralis_Contig184.53.1|Name=mRNA_P-littoralis_Contig184.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig184:143042..144065+ (Pylaiella littoralis U1_48)
GCGACCGGTGCCGTTGAGGACAGCAGCAACCATGAAAGCCGAGACGGGGG
CGGGCGCGGCGGCGGTGCGGCCGTTGCGGGCGGGTACGGCGGTAGCAACC
ATCCCGGCCGGGGGTGGGGGTGGCGCCGGCGCCGGCTCCGGCGGCGAAGT
CGTTTCTGCGGTCAACTAGGGTGGGTCACGGGTAAAACACAGCCGGCACC
CAACCTTGGAAACCAAAGGGTTGCGACCCCTCGAAGTTCCGGAGAGATAC
GGGCGTGGTCCACCAAGTTATCAGAAGCGCAGCAGCAGGGGCTAAGATCA
ACATCGTTGCTAACAGCGGCGGTTACGGCGTACAACGTCGAGTACTTTAC
CCAAGCGTTGACGCCTGGCGCGGTTCAGACCATTAGCGCGCCTACTTCGT
CGGAGAAGACGCGCAAGAGGTCGAGGACAGTGGCGAAAGAAATTGGAGAT
CGAGCGATCACCCAGCAGATAGAAGCCTTCAACCAGAGAGCAACCGGCAC
GGAGCCCTCCTCGGCCAGTACACCACCGCGCGCTGCCCCTCGCGTTCGTC
ACTATGTAGCTGCCGCTAAGGAAAGAGTCAACAGCGGGGCCCCTTTGAGG
CGTGACGAGATATCCCAAATTTCGGACACGTTGGCCTACGCGTACTTGAG
ATCCCTGGACCTGCCCACGACTGGCAATAGGGACGCCAAGCGCCAACGCC
TGATGGACTGGTTCGAACAAAACGATTTGTCACTGTACAAGCCGCCCAAG
GCCACGCCGTCAATAAATGAAGTTTCGATCTGA
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