mRNA_P-littoralis_Contig184.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.29.1
Unique NamemRNA_P-littoralis_Contig184.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig184.29.1 vs. uniprot
Match: A0A6H5L1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.820e-19
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 2 
Query: 1163 MHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 1432
            M   Q+ A + D+ + + ELLRL  LD SL  ERKF+A L+ G+ H++   Q   A +W H K+MSSSEEGQQVDRA ++KELS ++KF+
Sbjct:    1 MQMQQKAAILHDVSSMLAELLRLPMLDGSLSTERKFVATLDEGVKHALQGKQYDAAGMWLHGKLMSSSEEGQQVDRALLIKELSGVAKFI 90
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BLAST of mRNA_P-littoralis_Contig184.29.1 vs. uniprot
Match: A0A6H5K7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7C0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 7.470e-15
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 2 
Query: 1103 FKASWSTLLHKAPMCLQIPTMHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 1432
            FKA+WSTLL    +   I       +   I +I+  + EL R+  LD+SL EE+ F+ +   GL+ ++ + Q+   AVW HDK+MS++EEGQ+ DR +IVKELS ISKF+
Sbjct:  108 FKATWSTLL---TLISGITAFGRHDKHNRIQEIQRVLAELERVLALDTSLVEEKVFVHNRVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQIVKELSSISKFL 214
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BLAST of mRNA_P-littoralis_Contig184.29.1 vs. uniprot
Match: A0A6H5JHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.140e-13
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 2 
Query: 1181 VATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 1432
            + +  +I+  + EL RL  LD+SL EE+ F+ +L  GL+ ++ + Q+   AVW HDK+MS++EEGQ+ DR + VKELS ISKF+
Sbjct:   78 IYSFREIQRVLAELERLLALDTSLVEEKVFVHNLVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQKVKELSSISKFL 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1T2_9PHAE2.820e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7C0_9PHAE7.470e-1543.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN8_9PHAE4.140e-1346.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:76018..79221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FPB8
PFAMsCAP_GLY,CRAL_TRIO
Model size1435
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.58e-11
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size1038
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.458573-UTR-P-littoralis_Contig184:76017..764141680789884.458573-UTR-P-littoralis_Contig184:76017..76414Pylaiella littoralis U1_48UTRP-littoralis_Contig184 76018..76414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.476424-CDS-P-littoralis_Contig184:76414..771191680789884.476424-CDS-P-littoralis_Contig184:76414..77119Pylaiella littoralis U1_48CDSP-littoralis_Contig184 76415..77119 +
1680789884.4866867-CDS-P-littoralis_Contig184:78888..792211680789884.4866867-CDS-P-littoralis_Contig184:78888..79221Pylaiella littoralis U1_48CDSP-littoralis_Contig184 78889..79221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.29.1prot_P-littoralis_Contig184.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 76415..79221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.29.1

>prot_P-littoralis_Contig184.29.1 ID=prot_P-littoralis_Contig184.29.1|Name=mRNA_P-littoralis_Contig184.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=346bp
MSVLAIDMAAATAPPSMDAITQLCTETDAQNVSVWMPAKIAMGAGPRSAA
DLDLEDVVASVVQLAGAGDAPDPPKVFTIGMNARGEGGSVATVELRQKRA
LCQSLVEYLWRCTGNGGLKIGSGFLILPSAFPPIPPVSSGVGGGAAGPGL
PPQAPGLGGAAGGPSDPAEVGSADGGGSAAAPGSRKRTLAELHAAVDELS
ERQSLADGLGQPAERDAVATPPARRPMTYVSIPDKFKASWSTLLHKAPMC
LQIPTMHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLD
HSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFMG
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mRNA from alignment at P-littoralis_Contig184:76018..79221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.29.1 ID=mRNA_P-littoralis_Contig184.29.1|Name=mRNA_P-littoralis_Contig184.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3204bp|location=Sequence derived from alignment at P-littoralis_Contig184:76018..79221+ (Pylaiella littoralis U1_48)
GTATTATGAAAAGCGGAGATAGGGAATGACGCAGTCGGTCCCAATCCTGT
CATGCAATAAAGATCCGTTATGCCAGCAGTCAGGGTCATCTCTCACTTTT
TAATTTGCAACCTGTCTTGCAAGGAGAAACAGAGAGAAAAGAAGTAATCT
GTTGAGACCGCTCAGGCGTCAGCGCGCCCGCCCCGCTCCTACCGTCTCGT
GGCTTTGCCGCGGTGTGCGTTTTCCGGTGGTGCTCTCTCCCTCCGTGCTG
ATTGCTGGCTGCGGTCTGGCTTGTTGGTCTTCGCTACAGGGGGCTCTCGA
CCTCCCCCCTTTTTCTGCCTCTCAGGATCCGCCTTTCTTTTCTGTTCTTG
GTTTCTAGCCTCTCGTGTCTCTCGCATCCACCTGCCGTCCTTCCGGAATG
AGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCATGGA
TGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACGTGTCGGTTT
GGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCGGAT
CTCGATCTCGAGGATGTCGTTGCCTCCGTCGTGCAACTTGCTGGAGCAGG
CGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCCGTG
GCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCGCTC
TGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCACGGGGAACGGCGGACT
GAAGATCGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGATCC
CGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCGGGCCTTCCG
CCTCAGGCGCCAGGGTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCCAGC
GGAAGTTGGGAGCGCCGATGGTGGCGGTTCGGCGGCAGCCCCGGGCTCCC
GTAAACGCACCTTGGCCGAACTTCACGCTGCCGTCGACGAATTATCTGAG
CGGCAGAGCCTGGCGGACGGACTTGGGCAACCAGCGGAACGAGATGCGGT
GGCCACGCCCCCCGCCCGGCGTCCCATGACCTACGTCTCAATTCCCGATA
AGGTGAGATTATACGTGTGTTTGGCTTTGTGTATCCGGACGACCCACTCC
ACTATCGCTCGCTCCTTCGTCCCTCCCTCTCTGCTCTGCTCCCTCTCTTC
GGTTACGTTCACCCTCACCTCTTTCTGTTATGCTCTGTTCGGGTACCGAA
AGAAGCAGAGCTCTGGGATGTTCTGAGTTATCTGCAAGACCTGTTTTTCT
GGTCTGTTTTTCAGTACTGCTGTTTGGTAGCTTCCTCAAGTTGGCTCTGT
GGGTCGTTCGGTTGGCTCTCGTCTCCGTGTTTTTACACCATATTTCGTAC
GGAGTGTGATGCAACCATACATCATCCTTTCCCTTTGTGCATGCCCGTCC
AAAGGTCATGCTTGTGCCAGTCTACACCGTGCAGGTTAGGTCATACTTCG
AAATATATATGTACAGCAGACCTGCGTATCAGCACTTTTATTTATTTTTA
CTTTCTCTTCTTTATTCTCTTTGTGGTTGAGGAAAATACAGCGGACATGT
GCGTCTCGGAACATTTTCGCAGCCATCTCTTTGCCCACATTCTGCAGGTT
ATGACTGTTTTTATGCGTGTTTTTGTCCACTGGTGCTCTTGTTTTTGGGG
ATTGTTGACGTGACATCGCTCGCAGGTCGCACGGCCTTTGACCCTTTTTC
TGTGGTAATGTCTTCTTTGACAGCTATCTCCCTCTTCGCATAGTTTCGCG
CTGTTGCCAGACCTCGCCACCTAAAATCATCCTTTAAATAACGATGAACC
TCTCTGTCTGTTTCTGTCTTGGACAAAGGTATTTGCTTTCGCCAAGCTCT
GCATTTTTCCTCCTTCCGTGCTCCGGTTGAATTTTTTGACTCTGCCTTTC
CAACTCTCTCTTTCCAACCCGCGAGTTTTTCTCATTTCCTCTGCGAGTTT
ACCCGTTCCGGCTCAGTTCTGTTTAGTTACACGCTCGCCCACTCCAGCTT
TGGTTTTCGATTTGCTTTTCCTGTTTCCCGTTCCGGCTCAGTTATGTTCA
GTTACACGTTCACCCGCCCCAGCCCCGTTTCAGCCTGTTGCTCATGGCTT
GGTTTTTCTTCTTTCAGTTCCTGTTCCACCGTTCACGCTCAGTTTCGGTT
TTTCGCTCTCGGCTCGAGGTCCCGTTTGCTCCAGTTCCGTTTTCAGCCTA
TTGCTCACGGCTTGGTTCCCGTTCCGTTCACGCTCAGCCGTTCCAGTTCA
GTTTAAGCCTTGTGCTCTTGGCTCGTTGCCTCTTTTGCTCCAGTGCCGTT
TTTCGGCTTGTCGCTCACAGCTTGGTTCCCTGTCAGTACACGCTCAGTTT
CGGCTTGTCGCTCTAGCCTGATTTTTTCCCGTTCAGTTCCCGCTCCACGA
ACACAGTTTCGACCTTTCGCTCTAGTTCAATTTTCGGCCTGTCGTTCACG
GCTTGAGTCCCCGCTCAGTACACGGTCATTTGCGGCCCGTCGCTCAGGGC
TTAGCTATTTTACGTTCCATTAATGCTAACCACTTTCACGCTCAGTTCGG
CCTTTCGCCTTTGGTTCGATGCCCCATTTACTCCAGCTTCGTTTTCGGCC
TGTTTTCTCACGGCTTGGTTCCCGGTTTCAGTTCCCGCGATGCCCGTTCA
CGCTCGTTTCGGCTCAGTTCGCGCTCACAATTCTTCGCTCAGTTGACGCT
CACCCGCTCCGGTTCAGTTCGAGATTGTTCGCTCATTGCCGACCTTTGCA
TGGCGGCCCCTCTTTCTTTCCGTTCCCATGCCCATTACTTTGACCGTCTT
TCCGGTTCTGCTCCGCTTTAGTTCAAAGCTTCGTGGAGTACCCTTCTGCA
CAAGGCCCCAATGTGTTTGCAGATCCCTACTATGCATGAAGCCCAGCAAG
TGGCCACTATCGCCGACATTCGCGCAACGGTGACCGAATTGTTGCGGTTG
GCTCAGCTAGACTCTTCGCTGGACGAGGAACGCAAGTTCATGGCGGACTT
GGAAGCAGGGTTAGACCATAGTATGATGACCGGCCAGTTAGGCATCGCGG
CCGTCTGGTTTCACGATAAAATGATGAGTTCCTCGGAGGAAGGGCAACAA
GTAGACCGTGCTAGAATCGTGAAAGAATTGTCGCACATCTCCAAGTTCAT
GGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:76018..79221+

>mRNA_P-littoralis_Contig184.29.1 ID=mRNA_P-littoralis_Contig184.29.1|Name=mRNA_P-littoralis_Contig184.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1038bp|location=Sequence derived from alignment at P-littoralis_Contig184:76018..79221+ (Pylaiella littoralis U1_48)
ATGAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCAT
GGATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACGTGTCGG
TTTGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCG
GATCTCGATCTCGAGGATGTCGTTGCCTCCGTCGTGCAACTTGCTGGAGC
AGGCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCC
GTGGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCG
CTCTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCACGGGGAACGGCGG
ACTGAAGATCGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGA
TCCCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCGGGCCTT
CCGCCTCAGGCGCCAGGGTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCC
AGCGGAAGTTGGGAGCGCCGATGGTGGCGGTTCGGCGGCAGCCCCGGGCT
CCCGTAAACGCACCTTGGCCGAACTTCACGCTGCCGTCGACGAATTATCT
GAGCGGCAGAGCCTGGCGGACGGACTTGGGCAACCAGCGGAACGAGATGC
GGTGGCCACGCCCCCCGCCCGGCGTCCCATGACCTACGTCTCAATTCCCG
ATAAGTTCAAAGCTTCGTGGAGTACCCTTCTGCACAAGGCCCCAATGTGT
TTGCAGATCCCTACTATGCATGAAGCCCAGCAAGTGGCCACTATCGCCGA
CATTCGCGCAACGGTGACCGAATTGTTGCGGTTGGCTCAGCTAGACTCTT
CGCTGGACGAGGAACGCAAGTTCATGGCGGACTTGGAAGCAGGGTTAGAC
CATAGTATGATGACCGGCCAGTTAGGCATCGCGGCCGTCTGGTTTCACGA
TAAAATGATGAGTTCCTCGGAGGAAGGGCAACAAGTAGACCGTGCTAGAA
TCGTGAAAGAATTGTCGCACATCTCCAAGTTCATGGGC
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