mRNA_P-littoralis_Contig184.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.6.1
Unique NamemRNA_P-littoralis_Contig184.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig184.6.1 vs. uniprot
Match: A0A6H5JIE9_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE9_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.450e-29
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:  934 DFPFSTGAFRSGKYKLIKNEWCTGWYTFDKRLLARDPLTDPTSICNGHPCSGCGGEACGDH--FDYLFDLEIDPREENNLIKVYPEIAESLHNRMVEVAFKEW 1236
            +F  + GAFRSGKYK + N WCTGWYTFDK +LA DPLT+ T  C+G PCS CG + C  +   DYLFDLE DPREE+NLI   P++A ++  R VEVAF EW
Sbjct:  580 EFNLAQGAFRSGKYKYLANVWCTGWYTFDKHILAEDPLTNLTLACDGSPCSDCG-QGCTSYNSTDYLFDLEADPREEHNLIYDLPDVAHNMRERWVEVAFIEW 681
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BLAST of mRNA_P-littoralis_Contig184.6.1 vs. uniprot
Match: D7G1A6_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A6_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.630e-20
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:  922 IQPADFPFSTGAFRSGKYKLIKNEWCTGWYTFDKRLLARDPLTDPTSICNG-HPCSGCGGEACG----DHFDYLFDLEIDPREENNLIKVYPEIAESLHNRMVEVAFKEWT 1239
            I  ADF    GAFR GK+K + N WC+G+Y FD + L  D LTD  + C     CS CG   CG    D+ D+LFDLE DPRE NNL   +PE+ ESL  R++EV F+E++
Sbjct:  575 IGEADFTEVQGAFRQGKWKFMFNSWCSGYYAFDNKTLLADDLTDEDNTCQELGECSQCGAN-CGSLSIDYTDWLFDLEDDPRELNNLANEHPEVVESLRRRVLEVVFQEFS 684
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BLAST of mRNA_P-littoralis_Contig184.6.1 vs. uniprot
Match: A0A6H5L6W1_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6W1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.880e-18
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:  925 QPADFPFSTGAFRSGKYKLIKNEWCTGWYTFDKRLLARDPLTDPTSICNGHPCSGCGGEACGDHF--DYLFDLEIDPREENNLIKVYPEIAESLHNRMVEVAFKEWT 1239
            Q  D   + GAFRSGKYK+I N  C GWYTFD  +L  D LT+ + +C G  C+  GGE C D    DYLFDL+ DPRE NNL+   P++A+ + +R  EV F+E++
Sbjct:  504 QVYDTGHAQGAFRSGKYKMIFNVSCHGWYTFDGDILEADHLTNLSKVCGG-TCND-GGE-CSDETTSDYLFDLDQDPRESNNLVDDLPDVAQEMRDRWYEVTFREYS 607
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BLAST of mRNA_P-littoralis_Contig184.6.1 vs. uniprot
Match: A0A6H5K238_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K238_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.460e-14
Identity = 45/93 (48.39%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  922 IQPADFPFSTGAFRSGKYKLIKNEWCTGWYTFDKRLLARDPLTDPTSICNG-HPCSGCGG--EACG-DHFDYLFDLEIDPREENNLIKVYPEI 1188
            I  ADF    GAFR GK+K +   WC+G+Y FD   L  D LTD  + C     CS CG   E  G D+ D+LFDLE DPRE NNL   +PE+
Sbjct:  199 IGDADFTEVQGAFRQGKWKFMFKSWCSGYYAFDNNTLLADDLTDEDNTCQELGECSQCGANCENLGIDYTDWLFDLEDDPRELNNLANEHPEV 291
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIE9_9PHAE1.450e-2959.22Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
D7G1A6_ECTSI1.630e-2048.65Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
A0A6H5L6W1_9PHAE2.880e-1848.60Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K238_9PHAE2.460e-1448.39Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:27657..29902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLS5
PFAMsSulfatase
Model size1241
Max annot lvl2759|Eukaryota
KEGG koko:K01280
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.01e-35
EggNOG OGsCOG3119@1|root,KOG3867@2759|Eukaryota
EC3.4.14.10
Descriptionsulfuric ester hydrolase activity
Cds size411
COG categoryP
BRITEko00000,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.3108745-CDS-P-littoralis_Contig184:27656..277101680789884.3108745-CDS-P-littoralis_Contig184:27656..27710Pylaiella littoralis U1_48CDSP-littoralis_Contig184 27657..27710 -
1680789884.333734-CDS-P-littoralis_Contig184:28717..290741680789884.333734-CDS-P-littoralis_Contig184:28717..29074Pylaiella littoralis U1_48CDSP-littoralis_Contig184 28718..29074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.3447511-UTR-P-littoralis_Contig184:29074..299021680789884.3447511-UTR-P-littoralis_Contig184:29074..29902Pylaiella littoralis U1_48UTRP-littoralis_Contig184 29075..29902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.6.1prot_P-littoralis_Contig184.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 27657..29074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.6.1

>prot_P-littoralis_Contig184.6.1 ID=prot_P-littoralis_Contig184.6.1|Name=mRNA_P-littoralis_Contig184.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MRVVRRQCSTAYSPRRRRFRRALFPSALIFRIQPADFPFSTGAFRSGKYK
LIKNEWCTGWYTFDKRLLARDPLTDPTSICNGHPCSGCGGEACGDHFDYL
FDLEIDPREENNLIKVYPEIAESLHNRMVEVAFKEWT
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mRNA from alignment at P-littoralis_Contig184:27657..29902-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.6.1 ID=mRNA_P-littoralis_Contig184.6.1|Name=mRNA_P-littoralis_Contig184.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2246bp|location=Sequence derived from alignment at P-littoralis_Contig184:27657..29902- (Pylaiella littoralis U1_48)
GGGATCGGAGTACGATAGCATGATGCACGTCACTGATTGGCTCCCGACCA
TCGCCGCTGGCGCGGGTATCGACCTGAACGGAGGGTGAGATGGTTATGAT
ATGCAACGCGTAAACCTTCCACACATTCGTTTTTTTAATCTGGTGTGGTT
TGCACAGCGTGGCGAAGTTGCGAACGTTGTGGACTTCGCGCGAGCTCTCA
TTTTAGCTTCCACCGCTAGCAGCGTTTGTCAGCCATGCGTCAAGCTGCTG
GAATTGTACAGACCGCTAGCAACAGCCACGCGTCTCGTCTCACATTTTTT
CGCGCGCCATGAAACCTCCCTCGGTTGATAGCGTTGCACGCGCTTTTTCG
AATTACCAGCGCTGGGCCTTTGGACGGTATCAACCATTGGGACTACATGA
TGAGCTCCGGACAGAAGGCGAAATCAGCTAGCCCGCGCCAGGAAATACTT
TACAACTTGGACCCATACACCCTGTGGTTGAATGACGACTCAAACGGGTA
AGTTGAGTTTGTGTTTTGATTTATGTACCTCGACGCATTCCATCAGCCGT
CTTGCTCAAGACGGAAACGCGGCATCATGAAGACGAACTTGGGCTTCTCG
CTTATTCTTTTCTTGGATCGATTCACCTGGGACACCTAATTCGAGCTACA
AGAGCGAAGACTTGGGGTTGTCATAACCCTTACCGCATGCCCTCTCTCCT
CCGTGTATTCGAACCCCCCCCCCAGTAGTGAAGTCTGCCCGTCTCCATTT
TCATTGTAGCTGGCCTCGAGTTGTACGTTTTGGTGGGAAGGGCGACCCAC
TCATCAATGAAGCCCCTAGGGGGCCCCCATGAGGGTAGTTCGTCGTCAGT
GTTCGACAGCTTACTCGCCGCGTCGACGCCGCTTCCGCCGCGCTTTGTTT
CCCTCCGCGCTGATTTTTAGAATCCAACCCGCGGATTTCCCCTTTTCGAC
GGGAGCATTCCGGTCAGGAAAATACAAGCTTATCAAGAACGAGTGGTGCA
CAGGTTGGTACACGTTCGACAAGCGCCTACTCGCGCGGGACCCCCTCACG
GACCCTACAAGCATTTGCAACGGCCACCCTTGCTCCGGCTGCGGCGGCGA
AGCCTGCGGGGATCACTTTGACTACCTGTTTGACTTGGAGATAGACCCGA
GGGAGGAGAACAACCTCATCAAGGTCTACCCTGAGGTCAGTATCACTCAT
GTTCGCAGCCCACCACGTCTGTCCCCTCCATTATCGTTGTTCGTGGTCTT
TATATGATACCACTCTGTCCGGAAATATAGGTGTGATTCGAACTGACGGA
AATATAGGTGTGATTTGGAAAATACTGCTGTTTGTGACCCTACGGGCTGT
TTCAGAACCCCCAAGTGGTTTCAATATTGATGCCTTACCAAAAGGGAGGG
GGGGGGGGGGTTCGCCGGGTTATACGGGGACATTTGGATTCCATCCCCGG
GTTTCACTGATTTTGGGGGGAAATGTACCCAATTTTCCACGTTTTCCATC
ATTCTGACGGACTTTTTCAAGCTTGCACGACGTGTTGTAGTGCACGTGCG
AGTCGGATGAGCGCCCCAGTTGCCGGCGTAATTCCATGGAATATGCTCGG
GCAAAAGTATCATCACGCTGACATCGTCAGAAAAGTGACTAGAAGCACAC
GGTACAGGAGATTCTTTTCTGCAGGCCTGATTGCTGCAACTTTGCGCTGC
TGTGGTGGGTGCTGAACTGTGACAAATGCAATCAGTGCGGATATGGGGCT
TTCGAGGACATCGTCGAGAATACAGCAAAAAAAACTGTTTCAAAAAATTC
GTCAGCAGGAAGAAGTTATGCCGCAAAAAGCTCAAATCACACCTATATTC
CCTGACAGAGTGGTATGCCACAAAGCCGTCCTGAATGTGCGTGCTGCGGT
TGTTGGCCAAATCCGCCATGCCACCGATCTCATCATTTCGCGGCGTGACT
GATGCTTTTTGTGTGAAGTCGGGATACAAAGGCCGAAACGTAGGGTGCAG
GTGACGTACCGGTGTATTGCCGTTCATGCCTAGCACGCCCACCGTGTCAC
TTGGATCGAGAATTGGCCACCGAATTTATCCTCGAGCACCCATCGTATTA
ATGTATCCGGTACAAGGCCGCCTTCCCGCAGTTCGTCATGAAAGTGACTC
ACTCGTGGTGTTTACCCCCCGAATTCCAACAATGCTTCGCAGATTGCCGA
ATCTCTACACAACCGAATGGTGGAGGTAGCGTTCAAGGAGTGGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:27657..29902-

>mRNA_P-littoralis_Contig184.6.1 ID=mRNA_P-littoralis_Contig184.6.1|Name=mRNA_P-littoralis_Contig184.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig184:27657..29902- (Pylaiella littoralis U1_48)
ATGAGGGTAGTTCGTCGTCAGTGTTCGACAGCTTACTCGCCGCGTCGACG
CCGCTTCCGCCGCGCTTTGTTTCCCTCCGCGCTGATTTTTAGAATCCAAC
CCGCGGATTTCCCCTTTTCGACGGGAGCATTCCGGTCAGGAAAATACAAG
CTTATCAAGAACGAGTGGTGCACAGGTTGGTACACGTTCGACAAGCGCCT
ACTCGCGCGGGACCCCCTCACGGACCCTACAAGCATTTGCAACGGCCACC
CTTGCTCCGGCTGCGGCGGCGAAGCCTGCGGGGATCACTTTGACTACCTG
TTTGACTTGGAGATAGACCCGAGGGAGGAGAACAACCTCATCAAGGTCTA
CCCTGAGATTGCCGAATCTCTACACAACCGAATGGTGGAGGTAGCGTTCA
AGGAGTGGACC
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