mRNA_P-littoralis_Contig184.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.35.1
Unique NamemRNA_P-littoralis_Contig184.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:92866..95237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789883.5012708-CDS-P-littoralis_Contig184:92867..929161680789883.5012708-CDS-P-littoralis_Contig184:92867..92916Pylaiella littoralis U1_48CDSP-littoralis_Contig184 92868..92916 -
1680789883.5120728-CDS-P-littoralis_Contig184:93150..932421680789883.5120728-CDS-P-littoralis_Contig184:93150..93242Pylaiella littoralis U1_48CDSP-littoralis_Contig184 93151..93242 -
1680789883.5224376-CDS-P-littoralis_Contig184:95090..952371680789883.5224376-CDS-P-littoralis_Contig184:95090..95237Pylaiella littoralis U1_48CDSP-littoralis_Contig184 95091..95237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.35.1prot_P-littoralis_Contig184.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 92868..95237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.35.1

>prot_P-littoralis_Contig184.35.1 ID=prot_P-littoralis_Contig184.35.1|Name=mRNA_P-littoralis_Contig184.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
DQGFWHLPHTHVGPHTSARGPRAEAKPLGSPEHCTSGASSPRFSDGRFAV
GEDGHRHGGRALWTPLAPVVCGDRSYRHRRYDHFTLSLRQGCAPDD
back to top

mRNA from alignment at P-littoralis_Contig184:92866..95237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.35.1 ID=mRNA_P-littoralis_Contig184.35.1|Name=mRNA_P-littoralis_Contig184.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2372bp|location=Sequence derived from alignment at P-littoralis_Contig184:92866..95237- (Pylaiella littoralis U1_48)
GATCAGGGATTCTGGCACCTTCCACACACACACGTCGGTCCTCACACCTC
GGCACGCGGTCCACGCGCGGAGGCGAAACCTCTTGGGTCACCTGAGCATT
GCACCAGTGGAGCCTCGAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTG
AGTGCAAAAATCGTATTTCCTAGGGTCTCACAGGCGACCCCTTCTGACCC
CGGCTTCCGATTACCCTCTCTAGCACGGCAGCGTGCTCCTTCCACAGCGG
TGGCAAGTGTAGGCTCGCCCATCCCAGCCGTTCGCCATACTCATGATCTA
CTCTCGGGAGCAATCCGCGTGGGAAACGATCGTGTGTGGGCGAAGATATC
AACAAAATGCAGACCGCGAAGGAACATGCGACGAGCTCGGCGGACCTCAG
GGCCCTGGTTTTTCGCATTTTTTGCAAATTTTTTAAAATGAGGAACGTCT
GCTGTTGTCACAAAAAAAACTTTCATCAAAACATTGTCACGTCCCCATCA
TGCACCTTCTTTCGCGGTGTTTATTGCAGAGACCGTACAAATTACTTGAT
CGTCCCGTCACCGTAGTTGCGCCCGAGATTTAGGCGCGCAGATTCGTGTA
TCAGTTTCTCTAGAGAATTACAGTAGTAGTTCTTAGAGGAAGGCTATAAA
TAGATAAACTGAACAGACAGACGGGGATAGCGGAGCGAACCTGTCTGTAT
CCAGGTCTGTAAAGCGAGAGTCCGCGTTTGGTTTGCCAAGCTGTTCCAGC
TGTTTCGAGGCAGAAGTGGCGAGCCAGGGGTGATGTGCGAAAGTCTGTGG
GTATAGTGTGGCCCGACCTTTTGTTGTTCGTTTTCTGCAGGTCATAAGGC
TCTTTCCAATCACCTCGCGAAATTACAACGTTTGTTGTAATTTTACAACA
AACTTTGTAATGTCGGACAATATGGAGGCTTTCTTACAACGCTCGTGGGA
ATTGAACGCCGCCAAAAAATCGTGGGAAATTCAATTACAACAATCGTGGT
TTTTTTTTCAAACATACCTATTACACACCTACCTCGCCCATCAGCAGCAA
CAGCGGAGTAGACAGCAAAAGAAAGGTCAGGGCACCAAAGACAAACACTA
TGGCAAGCAAATCCACCCCTGGTCTGCGCATTCCAGCAGGTGTGGCGATA
CGTGTGGTGAAAATATACAGCAGCAGCGACCATATGAATCGGAATCCTTT
ATTTCGCCGCTTGTCTGCCTCTTTTTTCTTGCTTCACCAACCTACACCCT
CTTCTGGCAACTCTTTTTAAGCCAGCGACCGAGCCGTGACAACCTTGTAG
CGGGAGCGCTGTCGAGGGCCACTATCACATAGACCTCTGCTTCGAAAGAA
TCGGGACTTCGGGGGCTTTGTAGCTCGGATGCTGTGTGATGCCGTGGATT
ATTGTTTGTGATTGCCACCAAAAAACATCACCTGCGCAATTTGGGGTCGC
ATCAACAACACACACCCTCTCCTTGCGACCCTCTTCTCTCCTCACACAAC
CTGTGACAACTGCTTAGCGGTGGCGGTATCGAGGGCCACCATCACGGAGA
CTTCTGTTTCGAAAGAATCAGGACTTGGGAGGTCTCCAAGCTCCGTTGGT
GCCCTGTGTTGTGAAGTGTAGTTTGTTCGGATTTCTCACGAAAAAGCATG
ATAGCCAAGACGATTAGAAACGCGGAAATATTTTTTCTCTTTTCAGTGAA
TCCAATCAAACCTTTGTTGTAATCAAGCGAGGTGATTAGAAAGAGCCTCA
ATCGCTCGCAATAAAACATGTGCACGAGGGCCCTTCAAAACCACTCCACA
GCAGTGGGTTGGAATATATGTAGAAAGAAGTCACAGCAGCAGCCGCTGCC
CTGTGTAGTGAACGTTCAATGGAAGTTATGATATGCGGCCACCGAAGTTG
ACGTTCGGGTGCGATGGAAAATCAGGGACGATTTTCGTACTCGTTCGGCG
CTAAATTCGTCCCCCCGCCCCCCTTTGCGTGCTTTCTCTCGACAGGTGGG
GGAGGACGGCCACCGGCATGGCGGTCGGGCGCTTTGGACGCCTCTCGCGC
CTGTGGTTTGCGGCGACCGTTCTTACCGGCATCGTCGGTACGAACGATGC
ACTTGCCTGCTGCGGTTTGCTGTTAAACAATAGTTACTTGCTGCGCACAG
AGTCGAGCTCGTGTCCAGGGTTGTTTTGTGTGCGTCTGTGGGAGTGTGAT
ACAATATGCCTCCGTCAGCCACTCGGACAGCCACCGACGGTTCGTGTCTT
GTGAGATTTCCGTGCAAACTCAGTAATTCCCTTTTTTTGTACGCCACACC
CTTGCCGATGTTTTGCGCCAGGTACGACCACTTCACGTTGTCGCTACGTC
AAGGGTGTGCCCCCGATGACAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig184:92866..95237-

>mRNA_P-littoralis_Contig184.35.1 ID=mRNA_P-littoralis_Contig184.35.1|Name=mRNA_P-littoralis_Contig184.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig184:92866..95237- (Pylaiella littoralis U1_48)
GATCAGGGATTCTGGCACCTTCCACACACACACGTCGGTCCTCACACCTC
GGCACGCGGTCCACGCGCGGAGGCGAAACCTCTTGGGTCACCTGAGCATT
GCACCAGTGGAGCCTCGAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTG
GGGGAGGACGGCCACCGGCATGGCGGTCGGGCGCTTTGGACGCCTCTCGC
GCCTGTGGTTTGCGGCGACCGTTCTTACCGGCATCGTCGGTACGACCACT
TCACGTTGTCGCTACGTCAAGGGTGTGCCCCCGATGAC
back to top