mRNA_P-littoralis_Contig183.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig183.78.1
Unique NamemRNA_P-littoralis_Contig183.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig183.78.1 vs. uniprot
Match: D7FMP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 9.420e-21
Identity = 71/110 (64.55%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:  217 SLSSSRDGRGLQRAPDSTDRGSLFSDGRTTRSLSGASSAASLTPCSSTCTPRETSRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQEQLMTMKESRKRGKR 546
            S SSS+ GRGL  A      GS    GRTT     +S+A SLT  + T TPRET RTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQE++++ + ++KRG R
Sbjct:   87 SFSSSKGGRGLPSAY----CGSGVPSGRTTSRSLTSSAAISLTDYA-TDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHR 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMP4_ECTSI9.420e-2164.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig183contigP-littoralis_Contig183:373529..375024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons3
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789882.901316-CDS-P-littoralis_Contig183:373528..3738991680789882.901316-CDS-P-littoralis_Contig183:373528..373899Pylaiella littoralis U1_48CDSP-littoralis_Contig183 373529..373899 +
1680789882.913904-CDS-P-littoralis_Contig183:374455..3745641680789882.913904-CDS-P-littoralis_Contig183:374455..374564Pylaiella littoralis U1_48CDSP-littoralis_Contig183 374456..374564 +
1680789882.9304743-CDS-P-littoralis_Contig183:374943..3750241680789882.9304743-CDS-P-littoralis_Contig183:374943..375024Pylaiella littoralis U1_48CDSP-littoralis_Contig183 374944..375024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig183.78.1prot_P-littoralis_Contig183.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig183 373529..375024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig183.78.1

>prot_P-littoralis_Contig183.78.1 ID=prot_P-littoralis_Contig183.78.1|Name=mRNA_P-littoralis_Contig183.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
HHWQHGVTPRFSSGPTREQIKGHKPNPKSAAATATAPPLMSRSSKISQGS
ARNAEQTAETQRSARSTATTVASLSSSRDGRGLQRAPDSTDRGSLFSDGR
TTRSLSGASSAASLTPCSSTCTPRETSRTTTTMAMSTARAEATLAVLEAE
RAQLEHRLKKVEDELRQEQLMTMKESRKRGKRRTVR*
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mRNA from alignment at P-littoralis_Contig183:373529..375024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig183.78.1 ID=mRNA_P-littoralis_Contig183.78.1|Name=mRNA_P-littoralis_Contig183.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1496bp|location=Sequence derived from alignment at P-littoralis_Contig183:373529..375024+ (Pylaiella littoralis U1_48)
CACCATTGGCAACACGGCGTGACCCCACGTTTCTCTTCCGGCCCGACACG
CGAACAAATCAAGGGGCACAAACCGAACCCAAAATCTGCCGCTGCTACTG
CTACGGCCCCTCCCCTGATGTCTCGTAGTAGTAAGATTTCCCAAGGCAGC
GCCAGAAACGCTGAGCAGACAGCAGAGACGCAGCGGAGCGCAAGGTCTAC
CGCTACTACTGTGGCGTCCTTGTCTTCTTCGAGGGATGGACGAGGGCTGC
AAAGAGCGCCAGACTCTACCGACAGGGGGAGTCTTTTTTCGGACGGAAGG
ACAACGCGATCGCTTAGTGGTGCAAGTAGCGCGGCTAGCCTCACACCCTG
CTCCTCAACGTGTACTCCAAGGTGCTGGTAATTGATCAAGATACCATTAT
ATTGTAGTATTCCATGTGTTGTACGAGCAAGAACCCCTTTTTTGTACATG
CCTGCCGGACGAATTGTGTCAACACTAAAGAATGGCATTTCATGTGCAAC
CGTTATTTTACACGCTTGCGCCAAGGCGAACTACTGCACAGTAAGAAACA
CGGAAATAAGAAAGTCAGGCTGGGATTCTTGAAAATTTGAGAAATTCGGC
GTAAGAAAATTGGCTCAGCGGCTGGCCCTACACTAAATCCTTTATGGTAG
CTAAGAAACGGGCGTGCTCTCATGGTGGTCACAAAAGAAACGACCCAGCC
TCAGGCCGATATTCAGTTTCTTACTAGCGGGCCGGTACTGTACTCTATTG
CTGTACAGTACACATATCTGATTTCGGAAGCGCGCGTAGTTCAGAGCTAC
TTTAAGGTCACACCAAAATGTATCGTGATCGCCGCAACATTACGCATACT
TTTGGGGTTGGACATGCTTCAAAATTAAAAGAAATCATGTTTGAATCGTC
TTTGGCTATCTTCCTATTTTTGTGCAGGGAAACCTCTCGCACAACGACGA
CAATGGCCATGAGCACTGCGAGAGCAGAGGCTACGCTGGCGGTTTTGGAG
GCGGAACGGGCTCAATTAGAACATCGCCTCAAAAAGGTGGGCGATGTACT
GAAAAGCGGCCGAGAGGCTAGTGGAATGACTGGCGCCGCGGGGAGCCGTA
AAAGCCAATAAATCAAGGGCAGGACAACAAAATTCGAATTTATCCTGGGA
AACACTGAATTGCCCCTTCGTATCGATTTTCTTTTTCCTGCTGTTGTGGA
TGCCAGGATATTACTTTACACACTGTACTGCCGATCTTTCGACAAGATTC
ACGTAGTGTAGCTTTTTTTTATAAACTTTTTATGTTTTACATGACAAACG
TAGGCCGGTCTGTCCGTCACGCTTCAAACCGCGTCATGGACTTGCGAAGA
CATCATCTTGCCCCACGTATCTCTTGCCTCCACGCGATGCGTGCTCTTTG
TCCCAATCAATGAAGGTGGAAGATGAGCTGAGACAAGAGCAACTGATGAC
GATGAAAGAAAGTCGGAAGCGGGGAAAGAGGCGCACCGTTCGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig183:373529..375024+

>mRNA_P-littoralis_Contig183.78.1 ID=mRNA_P-littoralis_Contig183.78.1|Name=mRNA_P-littoralis_Contig183.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig183:373529..375024+ (Pylaiella littoralis U1_48)
CACCATTGGCAACACGGCGTGACCCCACGTTTCTCTTCCGGCCCGACACG
CGAACAAATCAAGGGGCACAAACCGAACCCAAAATCTGCCGCTGCTACTG
CTACGGCCCCTCCCCTGATGTCTCGTAGTAGTAAGATTTCCCAAGGCAGC
GCCAGAAACGCTGAGCAGACAGCAGAGACGCAGCGGAGCGCAAGGTCTAC
CGCTACTACTGTGGCGTCCTTGTCTTCTTCGAGGGATGGACGAGGGCTGC
AAAGAGCGCCAGACTCTACCGACAGGGGGAGTCTTTTTTCGGACGGAAGG
ACAACGCGATCGCTTAGTGGTGCAAGTAGCGCGGCTAGCCTCACACCCTG
CTCCTCAACGTGTACTCCAAGGGAAACCTCTCGCACAACGACGACAATGG
CCATGAGCACTGCGAGAGCAGAGGCTACGCTGGCGGTTTTGGAGGCGGAA
CGGGCTCAATTAGAACATCGCCTCAAAAAGGTGGAAGATGAGCTGAGACA
AGAGCAACTGATGACGATGAAAGAAAGTCGGAAGCGGGGAAAGAGGCGCA
CCGTTCGATAG
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