mRNA_P-littoralis_Contig183.65.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.770e-57 Identity = 113/189 (59.79%), Postives = 143/189 (75.66%), Query Frame = 3
Query: 288 VSSPARPNVD-EYRAWQRWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
V P RPN ++RA QRW++ +K+AAR KRK+ P R+ADR+R +A + KAR G+L G+FNVRTLAY G N IGHN TV+Q+C ++DCDV+GLQETRRA GA T GYV+IWSGARAGT +K+GVHGVG+AIK+++ D + +GG TVECIS RLMKVRLQ+ + GV+FVV YAPTET
Sbjct: 27 VLHPPRPNTTGKHRALQRWIDAKKLAARIKRKKTPPQREADRERQEIAAGVKATAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTET 215
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 190 bits (483), Expect = 2.070e-52 Identity = 100/172 (58.14%), Postives = 130/172 (75.58%), Query Frame = 3
Query: 336 RWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
RW++ RK+AARK+RK+ P R+ DR+R +A + KAR G+L G+FNVRTLAY G N IGHN TV+Q+C ++ CDV+GLQETRRA G+ GYV+IWSGARAGT +K+GVHGVG+AIK+++ + + + G TVECIS RLMKVRLQ+ + GV+FVV YAPTET
Sbjct: 40 RWIDARKLAARKRRKKAHPQREVDRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTET 211
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 183 bits (465), Expect = 3.300e-52 Identity = 98/176 (55.68%), Postives = 128/176 (72.73%), Query Frame = 3
Query: 324 RAWQRWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
RA QRW++ RK AARK RK+ P R+ DR+R +A + KAR G+L G+FNVRTLAY G N IGHN TV+Q+C ++ CDV+GLQETRR G+ GYV+IWSGARAGT +K+GVHGVG+AIK+++ + + + G VECI RLMKVRL++ + G++FVV YAPTET
Sbjct: 98 RALQRWIDARKFAARKIRKKAHPQREVDRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTET 273
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.040e-51 Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 3
Query: 288 VSSPARPNVD-EYRAWQRWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
V P R N + RA QRW+ RK+AARK RK+ P R+A R+R +A + KAR G+L G+FNVRTLA G N IGHN TV+Q+C ++ CDV+GLQETRRA G+ GYV+IWSGARAGT +K+GVHGVG+ IK+++ + + + G TVECI RLMKVRLQ+ + GV+FVV YAPTET
Sbjct: 18 VLHPPRQNTTGKNRALQRWINARKLAARKVRKKAHPQREAARERHETAAAVKAAAKRKAREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTET 206
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5KA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA69_9PHAE) HSP 1 Score: 186 bits (472), Expect = 4.510e-51 Identity = 104/189 (55.03%), Postives = 136/189 (71.96%), Query Frame = 3
Query: 288 VSSPARPNVD-EYRAWQRWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
V P+R N +YRA QRW++ RK+AARK K+ PLR+ADR+R +A + +AR G L G+FNVRTLAY G N IGHN TV+Q+C ++ CDV+ L E+RR G+ GYV+IWSGARAGT +K+GVHGVG+AIK+++ + + + G TVECIS RLMKVRLQ+ + GV+FVV YAPTET
Sbjct: 62 VLHPSRQNTTGKYRALQRWIDARKLAARKILKKAHPLREADRERHETAAAVKAAAKKEAREGGLPFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVMELHESRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTET 250
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 186 bits (472), Expect = 5.440e-50 Identity = 100/176 (56.82%), Postives = 128/176 (72.73%), Query Frame = 3
Query: 324 RAWQRWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
RA QRW+ RK AARK RK+ P R+ DR+R +A + KAR G+L G+FNVRTLAY G IGHN T++Q+C ++ CDV+GLQETRR G+ GYV+IWSGARAGT +K+GVHGVG+AIK+++ + + + G TVECIS RLMKVRLQ+ + GV+FVV YAPTET
Sbjct: 9 RALQRWINARKFAARKIRKKAHPQREVDRERHETAAAVKAAAKKKAREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTET 184
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 168 bits (425), Expect = 7.190e-47 Identity = 82/132 (62.12%), Postives = 102/132 (77.27%), Query Frame = 3
Query: 435 KARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
KAR G+L G+FNV TLAY G N IGHN TV+Q+C ++ CDV+GLQETRR G+ GYV+IWSGARAGT +K+G HGVG+AIK++I + + + G TVECIS RLMKVRLQ+ + GV+FVV YAPTET
Sbjct: 3 KAREGDLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTET 134
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.140e-46 Identity = 86/142 (60.56%), Postives = 110/142 (77.46%), Query Frame = 3
Query: 420 AEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTETDGTSE 845
A + KAR G+L G+FNVRTLAY G N IGHN TV+Q+C ++ CDV+GLQETRRA G+ GYV+IWSGARAGT +K+GVHGVG+AIK+++ + + + G TVECIS RLMKVRLQ+ + GV+F+V YAPTET T+E
Sbjct: 164 AAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTE 305
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.950e-46 Identity = 95/172 (55.23%), Postives = 125/172 (72.67%), Query Frame = 3
Query: 336 RWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
RW++ RK+AARK R++ P R+ DR+ + + KAR G+L G+FNV TLAY G N IGHN TV+Q+C ++ CDV+GLQETRR G+ GYV+IWSGARAGT +K+GVHGVG+AIK+++ + + + G TVECIS RLMKVRLQ+ + GV+FVV YAPTET
Sbjct: 611 RWIDARKLAARKIREKAHPQREVDREWHETAAAVKVAGKKKAREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTET 782
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 176 bits (445), Expect = 4.310e-46 Identity = 97/172 (56.40%), Postives = 124/172 (72.09%), Query Frame = 3
Query: 336 RWMEQRKIAARKKRKRNRPLRKADRKR-------RAEMRTKARAGELVVGSFNVRTLAYKGANGIGHNSNTVLQLCGSSDCDVVGLQETRRANDGAFTPAGYVVIWSGARAGTTEKKGVHGVGLAIKQSIVDGMDKGGMTVECISARLMKVRLQLTGSNGVSFVVAYAPTET 830
RW++ RK AARK RK+ R+ADR+R +A + KAR G+L G+FNVRTLAY G N IGHN TV+Q+ ++ CDV+GLQETRR G+ GYV+IWSGARAGT +K+GVHGVG+AIK+++ + + + G TVECIS RLMKVRLQ+ + GV VV YAPTET
Sbjct: 87 RWIDARKFAARKIRKKAHQQREADRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTET 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig183.65.1 >prot_P-littoralis_Contig183.65.1 ID=prot_P-littoralis_Contig183.65.1|Name=mRNA_P-littoralis_Contig183.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp MEQRKIAARKKRKRNRPLRKADRKRRAEMRTKARAGELVVGSFNVRTLAYback to top mRNA from alignment at P-littoralis_Contig183:348939..349786- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig183.65.1 ID=mRNA_P-littoralis_Contig183.65.1|Name=mRNA_P-littoralis_Contig183.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=848bp|location=Sequence derived from alignment at P-littoralis_Contig183:348939..349786- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig183:348939..349786- >mRNA_P-littoralis_Contig183.65.1 ID=mRNA_P-littoralis_Contig183.65.1|Name=mRNA_P-littoralis_Contig183.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig183:348939..349786- (Pylaiella littoralis U1_48)back to top |