mRNA_P-littoralis_Contig183.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig183.38.1
Unique NamemRNA_P-littoralis_Contig183.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig183.38.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.760e-14
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   19 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPT 210
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPT 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.760e-1454.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig183contigP-littoralis_Contig183:195904..196327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size214
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.8143704-CDS-P-littoralis_Contig183:195903..1960831680789881.8143704-CDS-P-littoralis_Contig183:195903..196083Pylaiella littoralis U1_48CDSP-littoralis_Contig183 195904..196083 -
1680789881.8287737-CDS-P-littoralis_Contig183:196294..1963211680789881.8287737-CDS-P-littoralis_Contig183:196294..196321Pylaiella littoralis U1_48CDSP-littoralis_Contig183 196295..196321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.8446553-UTR-P-littoralis_Contig183:196321..1963271680789881.8446553-UTR-P-littoralis_Contig183:196321..196327Pylaiella littoralis U1_48UTRP-littoralis_Contig183 196322..196327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig183.38.1prot_P-littoralis_Contig183.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig183 195904..196321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig183.38.1

>prot_P-littoralis_Contig183.38.1 ID=prot_P-littoralis_Contig183.38.1|Name=mRNA_P-littoralis_Contig183.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNG
RLDWLGPLWAEVKGLPPTT
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mRNA from alignment at P-littoralis_Contig183:195904..196327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig183.38.1 ID=mRNA_P-littoralis_Contig183.38.1|Name=mRNA_P-littoralis_Contig183.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=424bp|location=Sequence derived from alignment at P-littoralis_Contig183:195904..196327- (Pylaiella littoralis U1_48)
CAATACATGCGTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCA
TATTGTTGCCTGCTCGCACATTTCAGACATCATGCAGCCAATGTTTCCTT
TTGGTGTGACCTCGCATAGTCAGACTGGCACTTGTTGTTTCACTTGTGTT
TCATCACCATCGCAACGAGAGCCTGTTTGGGATGATATTTTCAATCGCTT
TTATCTTTTGTTTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGCT
GGCAAGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGG
TCTTCGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGG
ACGCCCTCTTCAACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAG
GTCAAAGGTCTTCCTCCTACAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig183:195904..196327-

>mRNA_P-littoralis_Contig183.38.1 ID=mRNA_P-littoralis_Contig183.38.1|Name=mRNA_P-littoralis_Contig183.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig183:195904..196327- (Pylaiella littoralis U1_48)
ATGCGTGGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCT
GGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAG
ATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGG
CGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCC
TACAACG
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