mRNA_P-littoralis_Contig183.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig183.22.1
Unique NamemRNA_P-littoralis_Contig183.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig183.22.1 vs. uniprot
Match: D8LFC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-9
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:   73 RLSSIVRAAGDASEESEALPLAVSPRCVQPGCERDGSLVMVTCDICNGALHRSCGA---TTDDDDEECE-PGHRCTTCATRSGKRKHA 324
            R   + RA  D S  S  LP+   P C++P C   G++ MV+C+ICNG +HR CG    T +DD E  +  G RC+ CA  +  +K A
Sbjct:  213 RHGDLGRAEADTSAASANLPVIYCPACIEPECNMSGNMSMVSCNICNGNIHRFCGVLGGTRNDDGETNDFEGTRCSPCAAANKGKKRA 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFC4_ECTSI1.010e-939.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig183contigP-littoralis_Contig183:162937..163266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.6393323-CDS-P-littoralis_Contig183:162936..1632511680789881.6393323-CDS-P-littoralis_Contig183:162936..163251Pylaiella littoralis U1_48CDSP-littoralis_Contig183 162937..163251 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.6508956-UTR-P-littoralis_Contig183:163251..1632661680789881.6508956-UTR-P-littoralis_Contig183:163251..163266Pylaiella littoralis U1_48UTRP-littoralis_Contig183 163252..163266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig183.22.1prot_P-littoralis_Contig183.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig183 162937..163251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig183.22.1

>prot_P-littoralis_Contig183.22.1 ID=prot_P-littoralis_Contig183.22.1|Name=mRNA_P-littoralis_Contig183.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MRDPPPVAMPAPSVHALRDRLSSIVRAAGDASEESEALPLAVSPRCVQPG
CERDGSLVMVTCDICNGALHRSCGATTDDDDEECEPGHRCTTCATRSGKR
KHAG*
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mRNA from alignment at P-littoralis_Contig183:162937..163266-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig183.22.1 ID=mRNA_P-littoralis_Contig183.22.1|Name=mRNA_P-littoralis_Contig183.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig183:162937..163266- (Pylaiella littoralis U1_48)
AACCAACTCGGCTGGATGCGCGACCCACCTCCCGTTGCAATGCCAGCGCC
GTCGGTGCATGCTCTACGTGACAGACTTTCTTCCATCGTGCGGGCAGCCG
GTGATGCATCGGAGGAATCTGAGGCTCTTCCCCTAGCGGTTTCCCCTCGG
TGTGTCCAACCTGGGTGTGAAAGAGACGGCAGCCTCGTCATGGTGACGTG
CGACATCTGCAACGGCGCCCTACACCGTTCCTGCGGAGCTACTACCGACG
ACGACGACGAGGAATGTGAACCTGGCCATCGCTGCACGACCTGCGCCACC
CGTAGCGGCAAAAGAAAGCACGCGGGATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig183:162937..163266-

>mRNA_P-littoralis_Contig183.22.1 ID=mRNA_P-littoralis_Contig183.22.1|Name=mRNA_P-littoralis_Contig183.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig183:162937..163266- (Pylaiella littoralis U1_48)
ATGCGCGACCCACCTCCCGTTGCAATGCCAGCGCCGTCGGTGCATGCTCT
ACGTGACAGACTTTCTTCCATCGTGCGGGCAGCCGGTGATGCATCGGAGG
AATCTGAGGCTCTTCCCCTAGCGGTTTCCCCTCGGTGTGTCCAACCTGGG
TGTGAAAGAGACGGCAGCCTCGTCATGGTGACGTGCGACATCTGCAACGG
CGCCCTACACCGTTCCTGCGGAGCTACTACCGACGACGACGACGAGGAAT
GTGAACCTGGCCATCGCTGCACGACCTGCGCCACCCGTAGCGGCAAAAGA
AAGCACGCGGGATAA
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