mRNA_P-littoralis_Contig183.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig183.1.1
Unique NamemRNA_P-littoralis_Contig183.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig183.1.1 vs. uniprot
Match: A0A6H5JVT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.470e-10
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:   64 ASGGKPEALKEEDKLDTGS-NPLSSPAAMAAAASARKMLNKNGDSSSRRQTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAMEEINVNAVELNKHMKRMVELRE 393
            AS G      +ED+L TGS NP SSPAAM+ AA  R M+N NG S SRR+TE A K E  ++R+A +DK +    KE    R++GVAAM   N N+ E+    KR+  + E
Sbjct:    2 ASEGATLKSSKEDQLATGSSNPCSSPAAMSTAA--RTMVNNNGQSVSRRETERAIKEEKAQVRQAARDKISEDRAKEAADARRQGVAAMVVSNQNSEEMVGQTKRLATIEE 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVT1_9PHAE8.470e-1045.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig183contigP-littoralis_Contig183:4..429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.4141266-UTR-P-littoralis_Contig183:3..121680789881.4141266-UTR-P-littoralis_Contig183:3..12Pylaiella littoralis U1_48UTRP-littoralis_Contig183 4..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.4291875-CDS-P-littoralis_Contig183:12..4291680789881.4291875-CDS-P-littoralis_Contig183:12..429Pylaiella littoralis U1_48CDSP-littoralis_Contig183 13..429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig183.1.1prot_P-littoralis_Contig183.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig183 13..429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig183.1.1

>prot_P-littoralis_Contig183.1.1 ID=prot_P-littoralis_Contig183.1.1|Name=mRNA_P-littoralis_Contig183.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MCLVPWSRNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAAAA
SARKMLNKNGDSSSRRQTEAAAKAEADRLRRAQKDKENMALMKETEVTRK
KGVAAMEEINVNAVELNKHMKRMVELREDETNLKKDEAQ
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mRNA from alignment at P-littoralis_Contig183:4..429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig183.1.1 ID=mRNA_P-littoralis_Contig183.1.1|Name=mRNA_P-littoralis_Contig183.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig183:4..429+ (Pylaiella littoralis U1_48)
CATTATGGCATGTGCCTGGTCCCCTGGAGCAGGAACACCCCGTCCgAGTG
GAAAAACCTGTGTGCGTCCGGCGGGAAACCCGAAGCGTTAAAGGAAGAAG
ATAAGCTGGACACGGGGTCAAACCCGCTCTCCAGCCCCGCAGCGATGGCC
GCGGCCGCATCGGCGCGCAAAATGCTCAACAAGAATGGTGATTCCTCGAG
TCGTCGCCAGACCGAAGCAGCAGCGAAAGCGGAGGCTGATCGGCTTCGCA
GGGCCCAGAAGGACAAGGAGAACATGGCGCTCATGAAAGAGACAGAGGTG
ACGAGGAAGAAGGGTGTCGCAGCCATGGAAGAGATAAATGTCAACGCGGT
GGAGCTAAACAAGCACATGAAGCGGATGGTGGAGCTTCGGGAAGACGAAA
CTAATCTCAAGAAGGACGAGGCCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig183:4..429+

>mRNA_P-littoralis_Contig183.1.1 ID=mRNA_P-littoralis_Contig183.1.1|Name=mRNA_P-littoralis_Contig183.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig183:4..429+ (Pylaiella littoralis U1_48)
ATGTGCCTGGTCCCCTGGAGCAGGAACACCCCGTCCgAGTGGAAAAACCT
GTGTGCGTCCGGCGGGAAACCCGAAGCGTTAAAGGAAGAAGATAAGCTGG
ACACGGGGTCAAACCCGCTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCA
TCGGCGCGCAAAATGCTCAACAAGAATGGTGATTCCTCGAGTCGTCGCCA
GACCGAAGCAGCAGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGA
AGGACAAGGAGAACATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAG
AAGGGTGTCGCAGCCATGGAAGAGATAAATGTCAACGCGGTGGAGCTAAA
CAAGCACATGAAGCGGATGGTGGAGCTTCGGGAAGACGAAACTAATCTCA
AGAAGGACGAGGCCCAG
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