mRNA_P-littoralis_Contig183.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig183.37.1
Unique NamemRNA_P-littoralis_Contig183.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig183.37.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.040e-16
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = 2 
Query:    8 RLQTWINDPSVLEAGFKTAREEIALPYLCCIINHVEEELYNFFVEERKNAI-GIKLEYPSQKYLIAKPRARVLYYIAGW 241
            RL  WIN P VLE GFK   EE AL YL CIINHVEE      V ER     G     PS++Y I++PR +VLYYIAGW
Sbjct:  114 RLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALVPSERYQISRPRGQVLYYIAGW 192
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BLAST of mRNA_P-littoralis_Contig183.37.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.710e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  116 EELYNFFVEERKNAIGIKLEYPSQKYLIAKPRARVLYYIAGWL 244
            +ELY  FV ++K A  IKL YP +K  + KPRA+VLYYI+GWL
Sbjct:  169 QELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWL 211
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BLAST of mRNA_P-littoralis_Contig183.37.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.070e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:  116 EELYNFFVEERKNAIGIKLEYPSQKYLIAKPRARVLYYIAGWL 244
            +ELY  FV ++K A  IKL YP  K  + KPRA+VLYYI+GWL
Sbjct:  111 QELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWL 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE7.040e-1655.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI1.710e-758.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R0_ECTSI2.070e-758.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig183contigP-littoralis_Contig183:195207..195790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.2599602-CDS-P-littoralis_Contig183:195206..1953341680789881.2599602-CDS-P-littoralis_Contig183:195206..195334Pylaiella littoralis U1_48CDSP-littoralis_Contig183 195207..195334 -
1680789881.270459-CDS-P-littoralis_Contig183:195672..1957901680789881.270459-CDS-P-littoralis_Contig183:195672..195790Pylaiella littoralis U1_48CDSP-littoralis_Contig183 195673..195790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig183.37.1prot_P-littoralis_Contig183.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig183 195207..195790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig183.37.1

>prot_P-littoralis_Contig183.37.1 ID=prot_P-littoralis_Contig183.37.1|Name=mRNA_P-littoralis_Contig183.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
EGETPNLDKRPQCVGGRVQDSAGGDCIALPMLHHQSRGGGVVQLLRGRAE
KCHRHQARVPESKISDCKTARESPVLHCRVVG
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mRNA from alignment at P-littoralis_Contig183:195207..195790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig183.37.1 ID=mRNA_P-littoralis_Contig183.37.1|Name=mRNA_P-littoralis_Contig183.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=584bp|location=Sequence derived from alignment at P-littoralis_Contig183:195207..195790- (Pylaiella littoralis U1_48)
GAGGGAGAGACTCCAAACCTGGATAAACGACCCCAGTGTGTTGGAGGCAG
GGTTCAAGACAGCGCGGGAGGAGATTGCATTGCCCTACCTATGCTGCATC
ATCAATCACGTGGAGGAGGTGGGTTGATGCGGTGGTCAATAGGAAGTGAG
GAACACATACCAGACGAAATTTGCCCAAGGATTACAATCTCCTTACCGCA
GCCGTAGTTGACTAAGACATAAACTCCATCCTCCCTCGGTATGTTACAGC
GCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTTCTGATTCCTTGTGT
GTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGGAGACGACCATTCTG
ATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGTAGCTGAGGCACCCT
CCCCGTGCCCGCGCTCCTCTCCTCGAACCGCTCCCCGTCCCCCCCCGTTG
CTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCGGAAAAATGCCATCGG
CATCAAGCTCGAGTACCCGAGTCAAAAATATCTGATTGCAAAACCGCGCG
CGAGAGTCCTGTACTACATTGCCGGGTGGTTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig183:195207..195790-

>mRNA_P-littoralis_Contig183.37.1 ID=mRNA_P-littoralis_Contig183.37.1|Name=mRNA_P-littoralis_Contig183.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig183:195207..195790- (Pylaiella littoralis U1_48)
GAGGGAGAGACTCCAAACCTGGATAAACGACCCCAGTGTGTTGGAGGCAG
GGTTCAAGACAGCGCGGGAGGAGATTGCATTGCCCTACCTATGCTGCATC
ATCAATCACGTGGAGGAGGAGTTGTACAACTTCTTCGTGGAAGAGCGGAA
AAATGCCATCGGCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGATTG
CAAAACCGCGCGCGAGAGTCCTGTACTACATTGCCGGGTGGTTGGC
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