mRNA_P-littoralis_Contig182.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.110.1
Unique NamemRNA_P-littoralis_Contig182.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.090e-27
Identity = 78/174 (44.83%), Postives = 106/174 (60.92%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKALLKEKSRGDGSSGKKLKLTIPGPARTSAEETPT-TSARSNRVCLSPVS-TASVSTSSFDSETGFEANEP 516
            KVL PGLVKG W A+ED  L+ +    P  +WG +S  + GRT KQCRER+C+HLDP I++   +T EED+II++TQA LG  WS+ A  LPGR  N+++ + KAL ++   G  SSG +   T     R   + T T T+AR +R   S  S +AS S SSF+S     A +P
Sbjct:  157 KVLRPGLVKGQWDAEEDAALMKLAT-APFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKG-AYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIRCKALQRKVLSGSPSSGGRSGSTSSPAGRAPKKSTGTSTTARQSRELSSSSSLSASESCSSFESGLDTMAEQP 328          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A2P4Y3D9_9STRA (Myb-like DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3D9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.960e-26
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKALLK-EKSRGDGSSGKKLKLTIPG 381
            KVL PGLVKG W  DEDE L  +  E    +WG+++ R+PGRT KQCRER+ NHLDP I   + +T+EED +IL  QA LG  WS  A  LPGR  +AV+ +WK+L +  K +G      K K+T  G
Sbjct:  135 KVLAPGLVKGHWRPDEDELLKELVAE-GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGE-YTQEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKSLCRVRKGQGRRGQADKGKMTSKG 260          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.120e-25
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKALLKE 327
            KVL PGLVKG W A+ED  L+ +    P  +WG +S  + GRT KQCRER+C+HLDP I++   +T EED II++TQA+LG  WS+ A  LPGR  N+++ + KAL ++
Sbjct:  150 KVLRPGLVKGQWDAEEDAALMKLAT-APFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKG-AYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQRK 256          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A024UVV8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVV8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.430e-25
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKAL 318
            KVL PGLVKG W+ADEDENL+ + +   T +WG+IS  + GRT KQCRER+ NHLDP I++  P++ +ED ++    A+LG  W++ A  LPGR  ++V+ +WK L
Sbjct:   84 KVLKPGLVKGHWAADEDENLVRLVQNSTTVNWGEISKSIEGRTAKQCRERWKNHLDPSINKG-PYSSDEDMLLAAAYAELGNRWTQIANRLPGRTEDSVKMRWKVL 188          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 2.250e-25
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKALLK 324
            KVL PGLVKG W  DED+ L  +  E    +WG+++ R+PGRT KQCRER+ NHLDP I   + ++ EED +IL  QA LG  WS  A  LPGR  +AV+ +WK+L +
Sbjct:   53 KVLAPGLVKGHWRPDEDDLLKELVAE-GRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGE-YSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKSLCR 158          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.720e-25
Identity = 55/106 (51.89%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKAL 318
            KVL PGLVKG WSA ED  L+++  +    +WG+++A++PGRT KQCRER+ +HLDP + + + +T EED  IL+ Q++LG  WS+ A  LPGR  NAV+ +WKAL
Sbjct:   71 KVLKPGLVKGQWSALEDAKLVDLVGK-GFKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGE-YTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKAL 174          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.320e-25
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKAL 318
            KVL PGLVKG W+ +ED+ L+++  E    +WG +SARVPGRT KQCRER+C+HLDP+I +   +T EED+II+  Q  +G  W+K A  L GR  NA + +WK L
Sbjct:  112 KVLTPGLVKGQWTPEEDKLLVSIVNE-GHKNWGSLSARVPGRTSKQCRERWCHHLDPRIVKG-GWTEEEDQIIVSLQQQMGNKWAKIAQHLDGRTENATKIRWKIL 215          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A6G0XBC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBC5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.950e-25
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKALLKEK 330
            KVL PGL+KG W+ +ED  L  +  E    +WG++++ +PGRT KQCRER+CNHLDP I++   +TREED++I+  QA LG  WS  A  L GR  +AV+ +WK+L++ K
Sbjct:  141 KVLKPGLIKGHWTPEEDAKLRALVAE-GRKNWGQVASHIPGRTSKQCRERWCNHLDPNINKGN-YTREEDQLIIDMQAKLGNRWSVIAQQLTGRTEDAVKIRWKSLMRTK 248          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A6G0WIR3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIR3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.210e-25
Identity = 55/112 (49.11%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKALLKEKSR 336
            KVL PGLVKG WS +ED+ ++ V  +   ++WG+I+ ++PGRT KQCRER+ NHLDP I++  P++ EED++IL  QA LG  WS+ A  LPGR  ++V+ +WK+L +  +R
Sbjct:  264 KVLKPGLVKGHWSFEEDK-ILEVLVKQSVNNWGQIAEQIPGRTPKQCRERWRNHLDPSINKG-PYSEEEDQLILSNQARLGNKWSQIAQMLPGRTEDSVKIRWKSLKQNPTR 373          
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Match: A0A418B0H6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B0H6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.350e-25
Identity = 56/116 (48.28%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRERYCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVRRQWKALLKEK--SRGD 342
            KVL PGL+KG W+ +ED  L  +  E    +WG++++ +PGRT KQCRER+CNHLDP I++   +TREED++I+  QA LG  WS  A  L GR  +AV+ +WK+L++ +  SRG+
Sbjct:  152 KVLKPGLIKGHWTPEEDAKLRTLVAE-GRKNWGQVASHIPGRTSKQCRERWCNHLDPNINKGN-YTREEDQLIVDMQAKLGNRWSVIAQQLSGRTEDAVKIRWKSLMRTRRSSRGN 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJU6_9PHAE1.090e-2744.83MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A2P4Y3D9_9STRA5.960e-2649.22Myb-like DNA-binding protein (Fragment) n=1 Tax=Ph... [more]
D8LM16_ECTSI1.120e-2550.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024UVV8_9STRA1.430e-2550.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
H3G911_PHYRM2.250e-2550.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2UU49_9STRA3.720e-2551.89Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5K458_9PHAE4.320e-2551.89MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6G0XBC5_9STRA6.950e-2549.09Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0WIR3_9STRA7.210e-2549.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A418B0H6_9STRA7.350e-2548.28Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:437788..439039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008861199.1
PFAMsMyb_DNA-binding
Model size570
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.35e-26
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size570
COG categoryADK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.2095652-CDS-P-littoralis_Contig182:437787..4379081680789881.2095652-CDS-P-littoralis_Contig182:437787..437908Pylaiella littoralis U1_48CDSP-littoralis_Contig182 437788..437908 +
1680789881.2198153-CDS-P-littoralis_Contig182:438590..4390391680789881.2198153-CDS-P-littoralis_Contig182:438590..439039Pylaiella littoralis U1_48CDSP-littoralis_Contig182 438591..439039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.110.1prot_P-littoralis_Contig182.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 437788..439039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.110.1

>prot_P-littoralis_Contig182.110.1 ID=prot_P-littoralis_Contig182.110.1|Name=mRNA_P-littoralis_Contig182.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
KVLIPGLVKGTWSADEDENLINVKEELPTSDWGKISARVPGRTDKQCRER
YCNHLDPKIDENKPFTREEDEIILKTQADLGETWSKTALDLPGRNGNAVR
RQWKALLKEKSRGDGSSGKKLKLTIPGPARTSAEETPTTSARSNRVCLSP
VSTASVSTSSFDSETGFEANEPRWFEWPAVPCPAARPAHL
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mRNA from alignment at P-littoralis_Contig182:437788..439039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.110.1 ID=mRNA_P-littoralis_Contig182.110.1|Name=mRNA_P-littoralis_Contig182.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1252bp|location=Sequence derived from alignment at P-littoralis_Contig182:437788..439039+ (Pylaiella littoralis U1_48)
AAGGTGCTCATACCTGGTCTGGTGAAAGGCACGTGGAGCGCCGATGAGGA TGAGAACCTCATAAACGTGAAGGAGGAACTTCCTACCTCGGACTGGGGCA AGATTTCTGCAAGGGTGCCGGGTGAGCGTTGTCCTTCGTCATTTTTTCTC CTGTAACCCTTCTTAGGAGACAGCACTGCCATAGCCTGCCGTGCGTGCCG AGATCAACAAGTGGAGTACACGCAACAGACACCGTCGTATGCAACATTCG CTCGGGACTTCTTGATGCACTAGCATCTTGGTCTGCCAGGAGTAACAAAG GGCGCGGCGCTTTTTACCCTGTGTGTTTCACGTTGCAGTGGTGTCATTGA TTCGCACGTCACCAAAGTAAGCTCGTTTGCCAAGCCAAGTCGGGTCAAGT CCAGTACAGGTACGACCTCGACCCTTCCCAAAAGTCGAGACTCCGCGGGA GCAGCGTCGATCCCCAAGATGGCACGAGTCGCTTGCCTCTTTTCGTAGCC AAGCCGTCGCGCTGCAGCTCTCACCATCGCCGTGCATGAGACGAACGGCA TGCGTGCGTGCGGCAACAATCATCGCGTTTACTTTTGAGGGACACCCCGC CCAACCCCCTCTTTCCCCACCAACTCGTCAAAGTGTACTGCAATTTTATC GTACCGTGTCAGACGGCTTTCGTTGCTGTTGGACGTCCCGCCTTTCCCCC TCCCCACCGCCGCCGCCGCCGCCTGCGCACCGAACGAACTACTGCTGGGC CTCCTTGTTATGTGTTTCGCTTGTTTGTTCTGTGCTGCTTCGATCGAAAA CAGGGCGCACGGACAAACAGTGCAGGGAGAGGTACTGCAACCACCTCGAT CCAAAAATCGACGAAAACAAACCGTTCACGAGAGAGGAGGACGAAATTAT CCTCAAGACTCAGGCTGATCTCGGCGAGACATGGAGCAAGACTGCGCTTG ACCTCCCGGGAAGGAATGGCAACGCTGTACGACGCCAGTGGAAAGCCCTC CTGAAGGAGAAATCTCGGGGCGACGGAAGTAGCGGCAAGAAGTTGAAGCT TACCATCCCCGGCCCCGCTAGGACTTCCGCAGAAGAGACCCCGACAACAT CCGCCCGGTCGAACCGAGTGTGTTTATCCCCAGTTTCCACTGCCTCGGTG TCGACGTCCTCCTTTGATTCGGAAACGGGCTTCGAGGCCAACGAGCCGCG GTGGTTCGAATGGCCAGCGGTGCCCTGTCCCGCTGCACGCCCTGCGCACC TA
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:437788..439039+

>mRNA_P-littoralis_Contig182.110.1 ID=mRNA_P-littoralis_Contig182.110.1|Name=mRNA_P-littoralis_Contig182.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig182:437788..439039+ (Pylaiella littoralis U1_48)
AAGGTGCTCATACCTGGTCTGGTGAAAGGCACGTGGAGCGCCGATGAGGA
TGAGAACCTCATAAACGTGAAGGAGGAACTTCCTACCTCGGACTGGGGCA
AGATTTCTGCAAGGGTGCCGGGGCGCACGGACAAACAGTGCAGGGAGAGG
TACTGCAACCACCTCGATCCAAAAATCGACGAAAACAAACCGTTCACGAG
AGAGGAGGACGAAATTATCCTCAAGACTCAGGCTGATCTCGGCGAGACAT
GGAGCAAGACTGCGCTTGACCTCCCGGGAAGGAATGGCAACGCTGTACGA
CGCCAGTGGAAAGCCCTCCTGAAGGAGAAATCTCGGGGCGACGGAAGTAG
CGGCAAGAAGTTGAAGCTTACCATCCCCGGCCCCGCTAGGACTTCCGCAG
AAGAGACCCCGACAACATCCGCCCGGTCGAACCGAGTGTGTTTATCCCCA
GTTTCCACTGCCTCGGTGTCGACGTCCTCCTTTGATTCGGAAACGGGCTT
CGAGGCCAACGAGCCGCGGTGGTTCGAATGGCCAGCGGTGCCCTGTCCCG
CTGCACGCCCTGCGCACCTA
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