mRNA_P-littoralis_Contig182.83.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: D8LLX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX7_ECTSI) HSP 1 Score: 297 bits (761), Expect = 1.510e-94 Identity = 161/245 (65.71%), Postives = 176/245 (71.84%), Query Frame = 3
Query: 246 IPGRPACRRWLSDAT--TGAPPSSTYSASDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGRGRAEIPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGSALSSKRARGEEGHVEDPVDWEEDFGQKAAEAAGRGVAEVDR 974
+PG ACRRWLSD++ T PPSS +A+D RPGRG AEI +I RVNLTV+EVVKAVEAQG TDVRAIDLRGK AGMGDFMVF TA PL MRR+ANMVVQALK R LVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASG+AL SKR +GEEGHVEDPVDWEEDFGQ+AA+AAGRG+ + +R
Sbjct: 35 VPGL-ACRRWLSDSSSDTPRPPSSAAAATDGRTWTWSTPSPN----------------------------------RPGRGGAEIAVIPRVNLTVDEVVKAVEAQGGTDVRAIDLRGKGAGMGDFMVFCTAATPLQMRRLANMVVQALKQRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGTALGSKRKKGEEGHVEDPVDWEEDFGQEAAKAAGRGIIDENR 244
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A836CM28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM28_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.770e-28 Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 3
Query: 468 RPGRGRAEIPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETV 839
R G A+I + +V LTV EVV A+E G TD+R + L GK + + D M+F T + HM+R+++++ ALK R L +A GITGAEG DCDDWM+VDC NLIVH A+ R+EL+LE WE +
Sbjct: 88 RKAGGSADIDVKPKVPLTVGEVVTALENNGGTDIRVVHLAGK-SDLADAMIFCTGRSMRHMQRLSDVITYALKRRKLSHAPGITGAEGYDCDDWMIVDCWNLIVHVFEAKYRKELNLEARWENI 210
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A3F2RH48_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RH48_9STRA) HSP 1 Score: 113 bits (282), Expect = 7.490e-25 Identity = 52/118 (44.07%), Postives = 82/118 (69.49%), Query Frame = 3
Query: 492 IPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVAS 845
IP + + LT++EV +A+E + A DV +DL GK + + D+MVF+T + HMRRMA+++++++K R +V+ G EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE + +
Sbjct: 69 IPAVPQTYLTIDEVQEALEREKAIDVYTVDLAGKSS-LADYMVFATGKSQAHMRRMADLLIKSMKAREIVDEFDY-GVEGRDCDDWMIADCNNIVVHLMHADTRRILALEDHWENMVN 184
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A0P1A703_PLAHL (Iojap-like ribosome-associated protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A703_PLAHL) HSP 1 Score: 114 bits (284), Expect = 2.270e-24 Identity = 55/116 (47.41%), Postives = 82/116 (70.69%), Query Frame = 3
Query: 492 IPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETV 839
IP I + L+++EV KA+E + A DV +DL GK +G+ ++MVF T + HMRRMA++++++LK R +V+ G EG DCDDWM+ DC+N++VHFM A+ R+ L LE HWE +
Sbjct: 150 IPPIPQTYLSLDEVQKALEREKAIDVYTVDLSGK-SGLANYMVFVTGRSQAHMRRMADLLIKSLKAREIVDDFDY-GVEGRDCDDWMIADCNNIVVHFMRADTRRILALEDHWENM 263
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A2D4BP62_PYTIN (Iojap-like ribosome-associated protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BP62_PYTIN) HSP 1 Score: 112 bits (281), Expect = 3.580e-24 Identity = 56/121 (46.28%), Postives = 84/121 (69.42%), Query Frame = 3
Query: 474 GRGRAEI-PIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWE 833
G+ A+I P I + LT++EV+ A+E + A DV +DL GK + + DFMVF+T + HMRRMA+M++Q++K R + + + EG DCDDWM+ DC+N++VHFM + R+ L+LE HWE
Sbjct: 110 GKRNADIIPPIPQTYLTLDEVLAALEREKAIDVYTVDLAGKSS-LADFMVFTTGRSQAHMRRMADMLIQSMKARNIEDEFDYS-VEGRDCDDWMIADCNNIVVHFMREDTRRILNLEHHWE 228
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A7S2R5J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5J7_9STRA) HSP 1 Score: 112 bits (279), Expect = 5.200e-24 Identity = 70/159 (44.03%), Postives = 90/159 (56.60%), Query Frame = 3
Query: 489 EIPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWE----TVASGSALSSKRARGEEGHVEDP------VDWEEDFGQKA 935
+IP++ R LTVEEV A+E V +D+ GK MVF T HMRRMA+++V ALK R + A G +GAEG DCDDWM+VD N+IVH M +AR+ LDLE HW+ T+ G S + A EE + P VD EE F +A
Sbjct: 87 QIPVVPRKYLTVEEVTTALEELRGMQVAVVDVTGKLEETSS-MVFCTGLGRTHMRRMADVLVSALKKRK-IKAPGASGAEGYDCDDWMIVDAGNIIVHLMNEKARRLLDLEAHWKNPEATLPQGGTESQREAHIEELIEQFPTPYDYNVDEEESFVDEA 243
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: H3GI95_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GI95_PHYRM) HSP 1 Score: 112 bits (280), Expect = 7.700e-24 Identity = 53/116 (45.69%), Postives = 82/116 (70.69%), Query Frame = 3
Query: 492 IPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETV 839
IP I + LT++EV++A+E + A DV +DL GK + + DFMVF+T + HMRRMA+++++++K R +V+ + EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE +
Sbjct: 148 IPSIPQTYLTIDEVMEALEKEKAIDVYTVDLAGKSS-LADFMVFATGRSQAHMRRMADLLIKSMKVRQIVDDFDYS-VEGRDCDDWMIADCNNIVVHLMRADTRRILALEEHWEKM 261
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A3R7GIQ2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GIQ2_9STRA) HSP 1 Score: 113 bits (282), Expect = 7.900e-24 Identity = 52/118 (44.07%), Postives = 82/118 (69.49%), Query Frame = 3
Query: 492 IPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVAS 845
IP + + LT++EV +A+E + A DV +DL GK + + D+MVF+T + HMRRMA+++++++K R +V+ G EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE + +
Sbjct: 185 IPAVPQTYLTIDEVQEALEREKAIDVYTVDLAGKSS-LADYMVFATGKSQAHMRRMADLLIKSMKAREIVDEFDY-GVEGRDCDDWMIADCNNIVVHLMHADTRRILALEDHWENMVN 300
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A3M6VLF3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLF3_9STRA) HSP 1 Score: 112 bits (280), Expect = 9.110e-24 Identity = 51/114 (44.74%), Postives = 83/114 (72.81%), Query Frame = 3
Query: 492 IPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWE 833
IP I++ LT++EV++A++ + A DV+ +DL GK + + +FM+F+T + HMRRMA+++++++K R +V+ G EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE
Sbjct: 158 IPPIAQTYLTIDEVMEALKREKAIDVQCVDLAGKSS-LAEFMIFATGRSQAHMRRMADLLIKSIKVRNIVDDFDY-GVEGRDCDDWMIADCNNIVVHLMRADTRRILALEDHWE 269
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Match: A0A329SL63_9STRA (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A329SL63_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.150e-23 Identity = 53/116 (45.69%), Postives = 80/116 (68.97%), Query Frame = 3
Query: 492 IPIISRVNLTVEEVVKAVEAQGATDVRAIDLRGKDAGMGDFMVFSTATNPLHMRRMANMVVQALKHRTLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETV 839
IP I + LT++EV +A+E + A DV +DL GK + + DFMVF+T + HMRRMA+++++++K R +V+ EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE +
Sbjct: 154 IPAIPQTYLTIDEVQQALEREKAIDVYTVDLAGKSS-LADFMVFATGRSQAHMRRMADLLIKSMKAREIVDDFDYA-VEGRDCDDWMIADCNNIVVHLMRADTRRILALEDHWENM 267 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig182.83.1 >prot_P-littoralis_Contig182.83.1 ID=prot_P-littoralis_Contig182.83.1|Name=mRNA_P-littoralis_Contig182.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=273bp MSLRHLANAAHRAAGRKMLMAACSISSAVIPGRPACRRWLSDATTGAPPSback to top mRNA from alignment at P-littoralis_Contig182:297255..301414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig182.83.1 ID=mRNA_P-littoralis_Contig182.83.1|Name=mRNA_P-littoralis_Contig182.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4160bp|location=Sequence derived from alignment at P-littoralis_Contig182:297255..301414+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig182:297255..301414+ >mRNA_P-littoralis_Contig182.83.1 ID=mRNA_P-littoralis_Contig182.83.1|Name=mRNA_P-littoralis_Contig182.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=819bp|location=Sequence derived from alignment at P-littoralis_Contig182:297255..301414+ (Pylaiella littoralis U1_48)back to top |