mRNA_P-littoralis_Contig182.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.44.1
Unique NamemRNA_P-littoralis_Contig182.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig182.44.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.420e-29
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   85 KRSRTLQHCIECGHKMRVGPFKKYHMQFLSSSQPKTCTVPGNLRREIKKPAQKNAVRKFGGECECTGDEQHPGGCE 312
            K  R  QHC+ECGHKMR+G FKKYH QFLS++QPK CTVP  LRR   +P Q+NA+RKFGGECECTGD  H GGC+
Sbjct: 1163 KPRRKPQHCVECGHKMRIGVFKKYHPQFLSAAQPKKCTVPEGLRRLAVRPTQQNALRKFGGECECTGDAAHLGGCK 1238
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE2.420e-2968.423'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:181771..182088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size320
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.6605992-CDS-P-littoralis_Contig182:181770..1820881680789878.6605992-CDS-P-littoralis_Contig182:181770..182088Pylaiella littoralis U1_48CDSP-littoralis_Contig182 181771..182088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.44.1prot_P-littoralis_Contig182.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 181771..182088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.44.1

>prot_P-littoralis_Contig182.44.1 ID=prot_P-littoralis_Contig182.44.1|Name=mRNA_P-littoralis_Contig182.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
GSSAGAAAAGSGDQGAPAGSGAVTGAPAKRSRTLQHCIECGHKMRVGPFK
KYHMQFLSSSQPKTCTVPGNLRREIKKPAQKNAVRKFGGECECTGDEQHP
GGCEM*
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mRNA from alignment at P-littoralis_Contig182:181771..182088-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.44.1 ID=mRNA_P-littoralis_Contig182.44.1|Name=mRNA_P-littoralis_Contig182.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig182:181771..182088- (Pylaiella littoralis U1_48)
GGGTCATCAGCTGGTGCTGCGGCTGCAGGTTCTGGAGATCAGGGGGCGCC
AGCGGGTAGTGGTGCTGTCACCGGTGCGCCTGCAAAACGCTCCCGTACTC
TGCAGCATTGTATCGAGTGCGGGCACAAGATGCGAGTTGGACCGTTCAAA
AAGTACCACATGCAGTTTTTGTCGTCATCTCAACCTAAAACATGTACTGT
TCCGGGGAATTTGCGCCGTGAGATAAAAAAGCCGGCACAAAAGAATGCTG
TGAGAAAGTTTGGTGGGGAATGCGAGTGTACCGGGGATGAACAGCACCCG
GGAGGCTGCGAGATGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:181771..182088-

>mRNA_P-littoralis_Contig182.44.1 ID=mRNA_P-littoralis_Contig182.44.1|Name=mRNA_P-littoralis_Contig182.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig182:181771..182088- (Pylaiella littoralis U1_48)
GGGTCATCAGCTGGTGCTGCGGCTGCAGGTTCTGGAGATCAGGGGGCGCC
AGCGGGTAGTGGTGCTGTCACCGGTGCGCCTGCAAAACGCTCCCGTACTC
TGCAGCATTGTATCGAGTGCGGGCACAAGATGCGAGTTGGACCGTTCAAA
AAGTACCACATGCAGTTTTTGTCGTCATCTCAACCTAAAACATGTACTGT
TCCGGGGAATTTGCGCCGTGAGATAAAAAAGCCGGCACAAAAGAATGCTG
TGAGAAAGTTTGGTGGGGAATGCGAGTGTACCGGGGATGAACAGCACCCG
GGAGGCTGCGAGATGTAA
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