mRNA_P-littoralis_Contig182.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.43.1
Unique NamemRNA_P-littoralis_Contig182.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 1.850e-99
Identity = 153/192 (79.69%), Postives = 169/192 (88.02%), Query Frame = 3 
Query:  195 DLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYGNAKYSDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPVEEILGGEYNCGLEP 770
            DLV  +YGGL+DKKTKQPLFRAEALEA+KRLRVHI+ DCC+D+PN+ALY EAGKD+ET C ++RC+RGTNDLEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVG FYDQPMLEAIQRMTSKLYG AKYS WLPTSAY DTGER GFVRSIF SN  GGG   V EILGG  N G++P
Sbjct:  219 DLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDP 410
[Close]
BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 4.420e-96
Identity = 150/192 (78.12%), Postives = 168/192 (87.50%), Query Frame = 3 
Query:  195 DLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYGNAKYSDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPVEEILGGEYNCGLEP 770
            D+V  +YGGL+DKKTKQPLFRAEALEA+KRLRVHI+ DCC+DAPN+ALY EAGKD+ET C ++RC+RGTNDLEG+HLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVG FYDQP+LEAIQRMTSKLYG AKYS WLPTSAY DTGER GFVRSIF S  GGGG   V EILGG  N  ++P
Sbjct:  394 DVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSEVGGGGTDSVLEILGGAENSSMDP 585
[Close]
BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 3.800e-93
Identity = 153/192 (79.69%), Postives = 169/192 (88.02%), Query Frame = 3 
Query:  195 DLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYGNAKYSDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPVEEILGGEYNCGLEP 770
            DLV  +YGGL+DKKTKQPLFRAEALEA+KRLRVHI+ DCC+D+PN+ALY EAGKD+ET C ++RC+RGTNDLEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVG FYDQPMLEAIQRMTSKLYG AKYS WLPTSAY DTGER GFVRSIF SN  GGG   V EILGG  N G++P
Sbjct:  792 DLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDP 983
[Close]
BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.260e-31
Identity = 80/177 (45.20%), Postives = 110/177 (62.15%), Query Frame = 3 
Query:  168 RRPVSVWLPDLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKL-YGNAKYSDWLPTSAYADTGERCGFVRSIF 692
            RR V +   D V + +GG VD  + + L R +A++AV++LR HI  DC +D    A+Y   GK+     T YRCVRGTND+EGYH ++R LL ++C SP LA  +LLE NYRWNLR  I NRGL  A+G  Y+Q ++E+IQR T+     +  + +W       DTGER G  RS++
Sbjct:  580 RRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHG-LTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLW 755
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BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 5.180e-31
Identity = 73/169 (43.20%), Postives = 104/169 (61.54%), Query Frame = 3 
Query:  210 VYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLY-GNAKYSDWLPTSAYADTGERCGFVRSIFASNGGG 710
            ++G +VD K+ + L R++A++ V  L  HI   C +D     LY   G+++    T +RCVRGTN  EGYH ++R LL ++C SP LAH +LLE N+RWN+R ++ NRGL   VGEF+DQ   E IQR T+  Y  N  + +W+     ADTGER G  +S++    GG
Sbjct:    1 MFGNVVDAKSGEKLLRSDAMKDVNLLLKHIETGCLSDPEGVPLYYPTGQNA-AGITTHRCVRGTNCTEGYHRYLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPDNPLFPEWVSALDVADTGERSGLSQSMWGPASGG 168
[Close]
BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.990e-30
Identity = 77/174 (44.25%), Postives = 106/174 (60.92%), Query Frame = 3 
Query:  195 DLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYGNAK-YSDWLPTSAYADTGERCGFVRSIFASNGGG 710
            +LV + +  +VD K+ + L R  A +AV+ LR HI   C +D     LY  +GK+S    T  RCVRGTN  EGYH ++R LL  +C SP LAH +LLE NYRWN+R ++ NRGL   VGEF+DQ  +E IQR T+  Y ++  + +W+     ADTGE+ G   S++    GG
Sbjct:  269 NLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNS-AGITTRRCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 441
[Close]
BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.800e-28
Identity = 75/174 (43.10%), Postives = 102/174 (58.62%), Query Frame = 3 
Query:  195 DLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYGNAK-YSDWLPTSAYADTGERCGFVRSIFASNGGG 710
            +LV + +  +VD K+ + L R  A +AV+ LR HI   C +D     LY        TR    RCVRGTN  EGYH ++R LL  +C SP LAH +LLE NYRWN+R ++ NRGL   VGEF+DQ  +E IQR T+  Y ++  + +W+     ADTGE+ G   S++    GG
Sbjct:  269 NLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTKSAGITTR----RCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 438
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BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 128 bits (321), Expect = 4.420e-27
Identity = 67/147 (45.58%), Postives = 87/147 (59.18%), Query Frame = 3 
Query:  195 DLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYGNAKYSDW 632
            D V   +  ++D KT +PLFR+   + V+ LR HI   C +D P+  LY   G+ S+    IYRC RGTN  EGYH HMR LL  +  SP L HLLLLE N+RWN+R ++ NRGL    G FY Q +L+ I R +S L  +  Y  W
Sbjct:  523 DFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTSQG-LPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEINRNSSGLSVHVPYLAW 668
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BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.700e-25
Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = 3 
Query:  195 DLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMT 596
            D V + +G  VD  +K+ L R ++++AV  LR HIV  C +D    A+Y   GK ++     YRCVRGTND+EGYH ++R LL ++C SP LA  +LLE N+RWNL+  + NRGL   +GE Y+Q ++E IQR T
Sbjct:  633 DKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVN-YRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766
[Close]
BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Match: A0A835YZB9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.040e-19
Identity = 57/142 (40.14%), Postives = 76/142 (53.52%), Query Frame = 3 
Query:  252 FRAEALEAVKRLRVHIVEDCCNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMRLLVA-WCLSPRLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYGNAKYSDWLPTSAYADTGERCG 674
            F  +  +AV+ LR HI   C  DA   + Y     D +     +RC RGTN  E YHL +R L+A + LSPRLAH LLL  N+R N+R +  +  L      FY Q  +E +Q +T+  +    Y  W P S +ADTGER G
Sbjct:    6 FSKKCWKAVQNLRQHITGSCVGDAAGVSPYYATHTD-KAGLQRWRCARGTNKNERYHLPLRKLLAQYNLSPRLAHSLLLPFNHRRNVRMAGKHGDLPAEYTHFYSQYKIEELQDLTAGWFATPLYQSWHPVSNFADTGERTG 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JD89_9PHAE1.850e-9979.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEU8_9PHAE4.420e-9678.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE3.800e-9379.693'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE1.260e-3145.203'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K9U3_9PHAE5.180e-3143.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE1.990e-3044.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE4.800e-2843.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG4.420e-2745.583'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI1.700e-2546.673'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A835YZB9_9STRA2.040e-1940.14Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:181295..183698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3Q9
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size2057
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons3
Evalue9.63e-29
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size867
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.5720274-UTR-P-littoralis_Contig182:181294..1822871680789878.5720274-UTR-P-littoralis_Contig182:181294..182287Pylaiella littoralis U1_48UTRP-littoralis_Contig182 181295..182287 -
1680789878.5866616-UTR-P-littoralis_Contig182:182466..1826521680789878.5866616-UTR-P-littoralis_Contig182:182466..182652Pylaiella littoralis U1_48UTRP-littoralis_Contig182 182467..182652 -
1680789878.6213777-UTR-P-littoralis_Contig182:183687..1836981680789878.6213777-UTR-P-littoralis_Contig182:183687..183698Pylaiella littoralis U1_48UTRP-littoralis_Contig182 183688..183698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.6019795-CDS-P-littoralis_Contig182:182652..1829431680789878.6019795-CDS-P-littoralis_Contig182:182652..182943Pylaiella littoralis U1_48CDSP-littoralis_Contig182 182653..182943 -
1680789878.6112196-CDS-P-littoralis_Contig182:183111..1836871680789878.6112196-CDS-P-littoralis_Contig182:183111..183687Pylaiella littoralis U1_48CDSP-littoralis_Contig182 183112..183687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.43.1prot_P-littoralis_Contig182.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 182653..183687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.43.1

>prot_P-littoralis_Contig182.43.1 ID=prot_P-littoralis_Contig182.43.1|Name=mRNA_P-littoralis_Contig182.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp
MSGQAEFLASIKDTISKAAPRHKLQHPYPYNDMWVYPPNPTMRSNIIVRH
HHRRPVSVWLPDLVKKVYGGLVDKKTKQPLFRAEALEAVKRLRVHIVEDC
CNDAPNQALYLEAGKDSETRCTIYRCVRGTNDLEGYHLHMRLLVAWCLSP
RLAHLLLLEHNYRWNLRQSINNRGLSEAVGEFYDQPMLEAIQRMTSKLYG
NAKYSDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPVEEILGGEYNCG
LEPPQGRGDPASRVNGVGCLPCEDAGSASTARASFQSS*
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mRNA from alignment at P-littoralis_Contig182:181295..183698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.43.1 ID=mRNA_P-littoralis_Contig182.43.1|Name=mRNA_P-littoralis_Contig182.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2404bp|location=Sequence derived from alignment at P-littoralis_Contig182:181295..183698- (Pylaiella littoralis U1_48)
AGGTGTCGTCGATGTCAGGACAGGCTGAATTCCTGGCGAGCATCAAGGAT
ACTATTTCCAAGGCGGCACCACGGCACAAGCTTCAACACCCGTACCCGTA
CAACGACATGTGGGTGTACCCCCCCAATCCAACGATGAGGAGCAACATCA
TTGTCAGACATCATCATCGCCGGCCGGTGTCCGTGTGGCTCCCCGACTTA
GTGAAGAAGGTTTATGGTGGGCTTGTTGACAAGAAGACGAAGCAGCCCCT
GTTTCGGGCGGAGGCGCTGGAGGCCGTCAAGCGTCTCCGAGTACACATAG
TGGAAGATTGCTGTAATGACGCCCCGAACCAAGCGCTGTACTTAGAGGCG
GGCAAGGATTCAGAGACTCGTTGTACGATTTATCGCTGTGTTCGAGGCAC
TAACGACCTAGAGGGGTACCACTTGCACATGCGCTTGTTGGTCGCATGGT
GTTTGTCGCCCAGGCTGGCTCACCTCCTGCTTCTTGAGCACAACTACAGG
TGGAATCTACGCCAGAGCATCAACAACCGCGGACTTAGCGAGGCTGTTGG
GGAATTCTACGACCAACCAATGCTCGAGGCCATTCAGGTAAGCCACCACC
CAAGCCGCTGTTGTTCCCACGATCGCGCATGCTGACCCAAGCTCACATTT
AGTTGAAGGTCTAGATCGAAAGGTACTTGATTTCAATATGCACTGAAGCG
AGCTCTTCCCTTCCCCATATTTCCGCATGTTTCACCTGTGTTTTCTTTTA
AACAGAGAATGACTTCAAAGCTGTACGGCAACGCGAAGTACTCTGACTGG
CTACCGACAAGCGCGTACGCGGACACAGGGGAGCGATGTGGATTTGTCCG
GAGTATTTTTGCGTCGAACGGAGGTGGGGGAGGGATCGCCCCGGTGGAGG
AAATCCTTGGAGGGGAATACAACTGCGGATTGGAACCCCCTCAGGGGAGA
GGTGATCCCGCTTCCCGAGTTAACGGGGTCGGCTGCCTCCCTTGCGAAGA
TGCAGGGAGTGCAAGTACCGCACGTGCCAGTTTCCAGTCCAGCTGAAATT
AAGAAGTTCGATCGTACGTGGATGAAGTTTGTGGACCCGTCGCGGAAGAC
GTCGGTGGTAGACTTTGACCGCTTTGCGTTGGAATGGAACAAGACCGTGT
CGGTCATGGAGGAGGAGGACGCCGCCACCATCATCCCTATTTTTAGGAAG
ACGGCTGGACAACTAAAGTCATACTGGAATGAGTGAGTGTAACATGCTTC
GTTTATTTTTGCATATCATCCAGTTCGGTAGTAGAGTTACAATCAGCTGT
TCGTTAGTTCCTAGCGGACCAGCGTACCAAGCGTGAAGTGAGCCTTGCTT
AATAATTCTCAACTTTGCTGACACGTCCCCTCCATGCCCGTGTATCGCGT
GACGGTTGCAGGCACCACGAAAGCATCATCATAAGGGACACGATGCGACT
TATCCGCCTACAAGAAGGTCCCGTAAGGAACCACCTCCGACTTCCGGACG
ATGTCGGGGGTGCTGCAACCGCCGTGGCGCAGCCTTGGGTGTTGCAGCCG
CCGGATGGCTTCGAATTCCCCACACAACTGCCGGCCCTCCCGGCGGCTGG
GGAGCAGGGGGGGTCATCAGCTGGTGCTGCGGCTGCAGGTTCTGGAGATC
AGGGGGCGCCAGCGGGTAGTGGTGCTGTCACCGGTGCGCCTGCAAAACGC
TCCCGTACTCTGCAGCATTGTATCGAGTGCGGGCACAAGATGCGAGTTGG
ACCGTTCAAAAAGTACCACATGCAGTTTTTGTCGTCATCTCAACCTAAAA
CATGTACTGTTCCGGGGAATTTGCGCCGTGAGATAAAAAAGCCGGCACAA
AAGAATGCTGTGAGAAAGTTTGGTGGGGAATGCGAGTGTACCGGGGATGA
ACAGCACCCGGGAGGCTGCGAGATGTAAATAATCGAGAGTTGTATATTCC
GCAGGACACCTTGTACAAAGGCCGTAGGGTTTATGGAGATGAGCCGTGAT
ACAAGAGAGTACAGTAATGGCGTTGTTTGGAGGTAGTGAACTTTTGTTAA
TACTAGGAGCGACGGCGGGTAGTGAAGATATCTTTGTTCGGATGTTGACG
ACAGTGAAAACATCTAAGTGACGTAAAAAATATCCGATGGGCCCCTTCAG
AGCTGTTTTACGACAGCAGTATGCACTCTCCTTCGAGCAATCGCAAAATG
AAATAATCAGGCAACAAAGAGAGATACCAGGTATCTCAGCTGATGACCCC
CCCTGCTCCCCAGCCGCCGGGAGGGCCGGCAGTTGTGTGGGGAATTCGAA
GCCATCCGGCGGCTGCAACGCCCAAGGCTGCGCCACGGCGGTTGCAGCAC
CCCCGACATCGTCCGGAAGTCGGAGGTGGTTCCTTACGGGACCTTCTTGT
AGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:181295..183698-

>mRNA_P-littoralis_Contig182.43.1 ID=mRNA_P-littoralis_Contig182.43.1|Name=mRNA_P-littoralis_Contig182.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig182:181295..183698- (Pylaiella littoralis U1_48)
ATGTCAGGACAGGCTGAATTCCTGGCGAGCATCAAGGATACTATTTCCAA
GGCGGCACCACGGCACAAGCTTCAACACCCGTACCCGTACAACGACATGT
GGGTGTACCCCCCCAATCCAACGATGAGGAGCAACATCATTGTCAGACAT
CATCATCGCCGGCCGGTGTCCGTGTGGCTCCCCGACTTAGTGAAGAAGGT
TTATGGTGGGCTTGTTGACAAGAAGACGAAGCAGCCCCTGTTTCGGGCGG
AGGCGCTGGAGGCCGTCAAGCGTCTCCGAGTACACATAGTGGAAGATTGC
TGTAATGACGCCCCGAACCAAGCGCTGTACTTAGAGGCGGGCAAGGATTC
AGAGACTCGTTGTACGATTTATCGCTGTGTTCGAGGCACTAACGACCTAG
AGGGGTACCACTTGCACATGCGCTTGTTGGTCGCATGGTGTTTGTCGCCC
AGGCTGGCTCACCTCCTGCTTCTTGAGCACAACTACAGGTGGAATCTACG
CCAGAGCATCAACAACCGCGGACTTAGCGAGGCTGTTGGGGAATTCTACG
ACCAACCAATGCTCGAGGCCATTCAGAGAATGACTTCAAAGCTGTACGGC
AACGCGAAGTACTCTGACTGGCTACCGACAAGCGCGTACGCGGACACAGG
GGAGCGATGTGGATTTGTCCGGAGTATTTTTGCGTCGAACGGAGGTGGGG
GAGGGATCGCCCCGGTGGAGGAAATCCTTGGAGGGGAATACAACTGCGGA
TTGGAACCCCCTCAGGGGAGAGGTGATCCCGCTTCCCGAGTTAACGGGGT
CGGCTGCCTCCCTTGCGAAGATGCAGGGAGTGCAAGTACCGCACGTGCCA
GTTTCCAGTCCAGCTGA
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