mRNA_P-littoralis_Contig182.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.40.1
Unique NamemRNA_P-littoralis_Contig182.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: D8LLY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY8_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 6.490e-144
Identity = 215/233 (92.27%), Postives = 219/233 (93.99%), Query Frame = 1
Query:    1 MATESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGRE-DQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQK 696
            MAT+SVELLALQRIDETCMQLQQQG+YLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQ+GRHQGALEHAQSALILLQEELF         GG   DQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEV  +
Sbjct:    1 MATDSVELLALQRIDETCMQLQQQGDYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGATVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVTAR 233          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A7S2CPG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPG4_9STRA)

HSP 1 Score: 391 bits (1005), Expect = 5.670e-132
Identity = 205/276 (74.28%), Postives = 236/276 (85.51%), Query Frame = 1
Query:   13 SVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGREDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSRTREELIRRSNRRPRGGGDG 840
            + ELLALQRIDETC QLQ QGNYL+ALECMERGLVLRQHFFG+DS+EVW ACK+VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD+AGRAVT+NNLACYYRR+GKLH+ALQYL KALKIE K+  +V++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEEL         DG   ++ P+ADRIAVLAIAYHN+GVE EFLKKF+ SLQSYRKGVEV++++LG +HA+TVTLRNS +AARRAI  RD + R + +    R+ RGGG G
Sbjct:    8 NAELLALQRIDETCKQLQTQGNYLEALECMERGLVLRQHFFGADSDEVWRACKVVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDNAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIENKL-DQVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEELSRVLGPMA-DG---NEAPKADRIAVLAIAYHNVGVEYEFLKKFDQSLQSYRKGVEVSERFLGPDHAITVTLRNSCIAARRAIMVRDPQARLQNLESKGRKGRGGGAG 278          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A7S3YLC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC4_HETAK)

HSP 1 Score: 386 bits (992), Expect = 1.180e-129
Identity = 198/256 (77.34%), Postives = 221/256 (86.33%), Query Frame = 1
Query:   10 ESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGREDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARD 777
            ++ ELLALQRIDETCMQLQQQGNYL+ALECMERGLVLRQHFFG++SEEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVTYNNLACYYRR+GKLHSALQYL KALKIE+KM   VE+PADTHLNTCAVLSQ+GRH  ALEHAQS++ILLQEELF           + D  PR DR+AVL IAYHN+GVEQEFLKK+E S+ SYRKGVEV +++LG  HA+TVTLRNS +AARRA+ ARD
Sbjct:   63 DNAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGAESEEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDQKGKAVTYNNLACYYRRQGKLHSALQYLQKALKIESKMKD-VENPADTHLNTCAVLSQLGRHTSALEHAQSSMILLQEELF-----------QGDGDPRPDRVAVLGIAYHNIGVEQEFLKKYEQSIASYRKGVEVVERFLGPRHAITVTLRNSLVAARRAVGARD 306          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A7S2RTK0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTK0_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.790e-128
Identity = 199/259 (76.83%), Postives = 225/259 (86.87%), Query Frame = 1
Query:   13 SVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGREDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSRTR 789
            + ELLALQRIDETC +LQQQGNYL+ALECMERGLVLRQHFFG++S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLHSALQYL  ALKIEAK+ +RV++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEEL         DG    + P+ADRIAVLAI+YHN+GVE EFLKKF+ SLQSYRKGVEVA+++LG  HA+T+TLRNS +AA+RAI ARD   R
Sbjct:   16 NAELLALQRIDETCRKLQQQGNYLEALECMERGLVLRQHFFGAESDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHSALQYLQNALKIEAKL-ARVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEELSRVVGPMA-DG---KEAPKADRIAVLAISYHNVGVEYEFLKKFDQSLQSYRKGVEVAERFLGSEHAITITLRNSCIAAKRAIMARDPHVR 269          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A7S4A6K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K0_9STRA)

HSP 1 Score: 375 bits (962), Expect = 1.610e-125
Identity = 198/275 (72.00%), Postives = 227/275 (82.55%), Query Frame = 1
Query:   10 ESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGREDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSRTR-EELIRRSNRRPRGG 831
            ++ ELLALQRIDETC   QQ G YL+ALECMERGLVLRQHFFG+ S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLH+ALQYL KALKIE ++ S V++PADT+LN CAVLSQ+GRHQ ALEHAQ ALILLQEEL          G     PP+ADR+AVLAIAYHN+GVEQEFLKK   SLQSYRKGVEVA++YLGG+HA+T TLRNS +AARR + ARD + R + + +++ RR  GG
Sbjct:   15 DNAELLALQRIDETCTNFQQNGQYLEALECMERGLVLRQHFFGAGSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIEGRLES-VDNPADTYLNACAVLSQLGRHQSALEHAQQALILLQEELSSVL------GSDNAGPPKADRVAVLAIAYHNVGVEQEFLKKHNQSLQSYRKGVEVAERYLGGDHAITSTLRNSCVAARRTMLARDPQARLQGMGKKAARRAPGG 282          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A836CET2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET2_9STRA)

HSP 1 Score: 373 bits (957), Expect = 7.470e-125
Identity = 193/240 (80.42%), Postives = 208/240 (86.67%), Query Frame = 1
Query:    4 ATESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXX-----DG----GREDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQK 696
            A +S ELLALQRIDETCMQLQQQGNYL+ALECMERGLVLRQHFFGSDS+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVT NNLACYYRR+GKLH+ALQYL +ALKIEA++GSRV+ PADTHLNTCAVLSQ+GRHQGAL+HAQSALILLQEELF             DG    G     PRADR+AVLAIAYHNMGVEQEFLK+F+HSLQSYRKGVEVAQK
Sbjct:    3 AADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 242          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A7S1XJL3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJL3_9STRA)

HSP 1 Score: 374 bits (961), Expect = 9.750e-123
Identity = 193/268 (72.01%), Postives = 227/268 (84.70%), Query Frame = 1
Query:    4 ATESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGRE-----DQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSRTRE 792
            + E+ ELLALQRIDETC+QLQQ GNYL+ALECMERGLVLRQHFFGSDS EVWSAC+ VGEMCNLLAMTYLQQ+D+ MVLELLKKAEILTERDD GRAVT+NN ACYYRR+GKLH+ALQ+L KAL+IE+++   V + ADT+LNTCAVLSQ+GRHQ ALEHAQ+ALILLQEELF         GG E       PP+ DRIAVLAIAYHN+GVEQEFLKKFE SL SYRKG++VA+++LGG+HA+ +TLRNS  AARRA +++D + R+
Sbjct:  112 SNETAELLALQRIDETCVQLQQSGNYLEALECMERGLVLRQHFFGSDSNEVWSACRTVGEMCNLLAMTYLQQQDYAMVLELLKKAEILTERDDKGRAVTFNNFACYYRRQGKLHAALQFLQKALRIESRLVD-VPNAADTYLNTCAVLSQLGRHQSALEHAQNALILLQEELFHGIEGGAGMGGEEAGLAPPNPPK-DRIAVLAIAYHNIGVEQEFLKKFEMSLTSYRKGIQVAERFLGGDHAIALTLRNSLTAARRAFASKDPKGRK 377          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A7S3HH21_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH21_9STRA)

HSP 1 Score: 356 bits (914), Expect = 5.510e-118
Identity = 181/253 (71.54%), Postives = 215/253 (84.98%), Query Frame = 1
Query:   13 SVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGREDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISA 771
            + E+LALQR+DET  QLQ+QGNYL+ALECMERGLVLRQHFFG+DS EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+D+AGRA T+NNLACYYRR+GKLH+ALQYL KALKIE+ + + V++PADTH+N CAVLSQ+GRHQ AL+HAQ+A+ILLQEEL          G     PP+ADRIAVLAIAYHN+GVEQEFLK++E S+ SY+KGVEVA++YLG  HA+ VTL NS +AA++  +A
Sbjct:    4 NAEVLALQRLDETSAQLQKQGNYLEALECMERGLVLRQHFFGADSPEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDEAGRAATFNNLACYYRRQGKLHAALQYLQKALKIESGL-TNVQNPADTHINACAVLSQLGRHQTALDHAQNAIILLQEELLSPP------GVVGAAPPQADRIAVLAIAYHNIGVEQEFLKRYEQSVLSYKKGVEVAERYLGAKHAICVTLNNSLVAAKKQAAA 249          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A024U4G6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4G6_9STRA)

HSP 1 Score: 327 bits (837), Expect = 2.710e-106
Identity = 177/263 (67.30%), Postives = 200/263 (76.05%), Query Frame = 1
Query:    4 ATESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGR-EDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSRTR 789
            A E  EL ALQR+D  C +LQQ+G Y +ALECME+GLVLRQHFFGSDS EV  ACK VG+MCNLLAMTYLQQE+F +VLELLKKAEILTER  AGRAVT NN ACYYRR+G LH AL +L +AL IEAK+   V + ADTHLN CAVLSQ+GRHQGALE AQ+ALILL EELF         G    D   + DRIAVL IAYHN+GVEQEFLKK E S+ SYRKG EVA KYLG +H + +TLRNS + A RA+ AR SR R
Sbjct:   27 AVEDQELYALQRLDTKCTELQQEGKYTEALECMEKGLVLRQHFFGSDSPEVRDACKTVGDMCNLLAMTYLQQENFPIVLELLKKAEILTERHPAGRAVTLNNFACYYRRQGNLHKALTHLTEALAIEAKL-EHVPNRADTHLNMCAVLSQLGRHQGALEQAQAALILLHEELFSAPTPGNQHGSPVADASVKLDRIAVLGIAYHNVGVEQEFLKKLELSIHSYRKGAEVAAKYLGESHGMVITLRNSLVTATRALEARASRGR 288          
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Match: A0A2R5G2B1_9STRA (Clustered mitochondria protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2B1_9STRA)

HSP 1 Score: 344 bits (882), Expect = 3.840e-104
Identity = 177/260 (68.08%), Postives = 209/260 (80.38%), Query Frame = 1
Query:    4 ATESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEELFXXXXXXXXDGGREDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSR 783
            A  + ELLAL RIDET  +LQQQG YL+ALECMERGLVLRQHFFG  S+EVW+ACK VG+MCNLLAMTYLQQE+F MVLELLKKAEILTERD+ GRAVTYNNLACY+RR GKLH+ALQYL KALK+E+++   V + ADTHLN CAVLSQ+GRH GALEHAQ+ALI LQEELF                   DRIAVLAIAYHN+GVEQEFLK+FE ++ SYRKGV++++ +LG +H +TVTLRNS +AAR+A  +  +R
Sbjct:  440 AEANAELLALHRIDETSTRLQQQGKYLEALECMERGLVLRQHFFGPSSDEVWAACKTVGQMCNLLAMTYLQQEEFSMVLELLKKAEILTERDEHGRAVTYNNLACYFRRTGKLHAALQYLQKALKVESRL-ENVTNRADTHLNLCAVLSQLGRHAGALEHAQAALIQLQEELFPGALSASAKSSSSAALASTDRIAVLAIAYHNIGVEQEFLKRFEMAIDSYRKGVDISETHLGTDHGITVTLRNSYLAARQAAESARAR 698          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY8_ECTSI6.490e-14492.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPG4_9STRA5.670e-13274.28Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3YLC4_HETAK1.180e-12977.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RTK0_9STRA1.790e-12876.83Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S4A6K0_9STRA1.610e-12572.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836CET2_9STRA7.470e-12580.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XJL3_9STRA9.750e-12372.01Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HH21_9STRA5.510e-11871.54Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A024U4G6_9STRA2.710e-10667.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2R5G2B1_9STRA3.840e-10468.08Clustered mitochondria protein-like n=1 Tax=Hondae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:164520..168215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLY8
PFAMsTPR_1,TPR_10,TPR_12,TPR_8
Model size1335
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.06e-144
EggNOG OGs28ZWJ@1|root,2R6RA@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-14_002170.1
DescriptionTetratricopeptide repeat
Cds size1335
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.4134655-CDS-P-littoralis_Contig182:164519..1645911680789878.4134655-CDS-P-littoralis_Contig182:164519..164591Pylaiella littoralis U1_48CDSP-littoralis_Contig182 164520..164591 +
1680789878.430342-CDS-P-littoralis_Contig182:164950..1652711680789878.430342-CDS-P-littoralis_Contig182:164950..165271Pylaiella littoralis U1_48CDSP-littoralis_Contig182 164951..165271 +
1680789878.4421892-CDS-P-littoralis_Contig182:166485..1667761680789878.4421892-CDS-P-littoralis_Contig182:166485..166776Pylaiella littoralis U1_48CDSP-littoralis_Contig182 166486..166776 +
1680789878.4534578-CDS-P-littoralis_Contig182:167015..1672571680789878.4534578-CDS-P-littoralis_Contig182:167015..167257Pylaiella littoralis U1_48CDSP-littoralis_Contig182 167016..167257 +
1680789878.4663029-CDS-P-littoralis_Contig182:167806..1682151680789878.4663029-CDS-P-littoralis_Contig182:167806..168215Pylaiella littoralis U1_48CDSP-littoralis_Contig182 167807..168215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.40.1prot_P-littoralis_Contig182.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 164520..168215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.40.1

>prot_P-littoralis_Contig182.40.1 ID=prot_P-littoralis_Contig182.40.1|Name=mRNA_P-littoralis_Contig182.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=445bp
MATESVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSE
EVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVT
YNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLS
QVGRHQGALEHAQSALILLQEELFGGGAAMGGDGGREDQPPRADRIAVLA
IAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMA
ARRAISARDSRTREELIRRSNRRPRGGGDGGGAERVGRPRQAKSNVGTGV
LSHALSTASASSQQQQQQQRQQPEHQFESLRESTQEGEDEGNIEGCDEEK
DETDRVARGLMERTTLEPAPPPVAAVAEATVETVGAVAVAATGENLLQEP
SGLSGRNEGNLLDGDSALGGMISPRPAEQDGDMQEERASAIVGV*
back to top

mRNA from alignment at P-littoralis_Contig182:164520..168215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.40.1 ID=mRNA_P-littoralis_Contig182.40.1|Name=mRNA_P-littoralis_Contig182.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3696bp|location=Sequence derived from alignment at P-littoralis_Contig182:164520..168215+ (Pylaiella littoralis U1_48)
ATGGCGACGGAGAGCGTAGAATTACTCGCGTTACAGCGCATTGACGAGAC ATGCATGCAACTTCAGCAGCAGGTTCGTTCATGACATTGGCAATTAATCC GTGGTCGATGTCGATGGAGCCTAAGTTCTGTTTATCTCCTCATCGGTCAC GAACGATCCTGCTGTACGCCTACACCCCACGAGATTAAACACGGAAGTAC CCCGGAAAAGTATGTATTGACACAGAATTATGCCAGCCTTCGGCAGGGTT GATGTACGTTATGCCCAGCCTTCGGTAGGGTAGATAGATATCATGTGTCA CGCCATCCAGCTTTGCGGCTTCGAACACGTGCCCAATACACTACGCACTC TCTCCTCTTCTACTCGTAGCCCCTGAGCACAATAAAAGCGGGAGTTGTAT GGGCATCCCTTCTCTAATGTGGCATCCACAGGGAAATTACTTGCAAGCGC TGGAATGCATGGAGCGGGGGCTTGTGCTTCGGCAGCACTTCTTCGGCAGC GACAGCGAGGAGGTGTGGAGCGCCTGCAAAATCGTCGGCGAGATGTGCAA CCTTCTCGCCATGACCTACCTGCAGCAGGAGGACTTCGGCATGGTACTCG AGTTGCTGAAGAAGGCGGAAATTCTCACAGAGAGGGATGACGCCGGCCGG GCGGTCACATATAATAATTTGGCGTGCTACTATCGCCGCCGCGGGAAGCT GCATTCCGCGCTTCAGTACCTCCACAAGGCTCTCAAAATTGAAGCCAAGA TGGTGAGTTGAAACGAGGGAGTGGGTGAGAGGGCCCTCCTTGTCCCTCGG GGACGGTTTGGTTTCAACACCGTACTTCCCTCCATAACTCCACAGCGTCG CGTCCTGTGAAGTTGATGCGCCAGTGTCGAAGCTATTTGTTGGCCCTGGC ATCATCGCCAGTTTACGTGAAAATATTTTTGCTGGTCTCACCATTCGATT ATGCGTTGGTAGCTTATTACAGCCGCTTGTTGGTGCTCGTCGTAGAAGAC GACGTGGCCAGGGTATCGTACTGGCAGAGTACCAGGTGTGATTTGAGCCC ACACCCTTGATTTGACACGTGCATCGTGTACTCGCTTGATCAAATAGTGC CAGTTCGTCTGTATTTCCAATATTGGAAGAGCTCCCGGAGGAATTGCATC ATCACTTTACGCTCAGTCCGGGTCTATTGTACGAAGCACTTCGTATGTAT TTCTTGGACGACATACACCGGAGTGGCACTGCTGTTACGATGCATTTCAT AATCTAAAACCGAATCGACATTCAACCCTGTACAGAAGAAAGGCTGCAGA CCCTTGTAATATCAACGCGTATAGCAGTAACGCTGAGGGAGGGTATCTCA AGGCAAGTGGAAGGCTTCCTCTGCTGATAAAAGCACGAAATCAAAAGCAC CTGTTTCCGTCACCTAGAATGACACGTAGCGCGCTTATGTCAATAAAACG TAGGAAAAATCCCTTCGACACCTATTTCTGTGGGGATGGTGTTGGTGATG TTTGTAGAAGCTCAGCGGTATTGCTTTCGTCGGGGAACACATTCCAACTT GCTGAGTCGTTCGACGGTAGCTCCCCTAACCTTTTTGTAGCTTTCATCGC TGGATTCGGAACCAACCCAGGCCCTACAGAAAGTCTGGCGCCCTTGGCCA CCATGACCCTCATCGTTTGATAGCCTTCGGAATACTTGGACAATTTGTAA AGATTTTGTTTTCATTTCGTCGTTCTTGAAGATGAATACCCATGAAACGA TCGTTCAAGGAAATCGTTGAATTTCTTAGGGGTCTATACCACCGTAGAAT CAGCCCGCTCGTAATTGTACACTACCAAATCAAGATGCTCGCGCGCAATG TCTCTTCTCGTGACCTTTACCCATCAACACTTGATCGAAACACCACTTTG ACCGTACACGTCCCCACCGTGGTCTCTAACGGAATCATTATTATGATGAC GGTTGGCACCAAACAGGGCTCGCGCGTGGAGCACCCCGCAGATACCCACC TTAACACGTGCGCGGTGCTTTCGCAAGTCGGGCGACATCAGGGGGCCTTA GAGCACGCGCAGTCGGCCCTAATCCTTCTGCAGGAAGAACTTTTCGGGGG TGGCGCAGCGATGGGGGGAGATGGAGGAAGGGAAGATCAGCCCCCCCGCG CCGATCGAATCGCCGTGCTGGCGATTGCCTACCACAACATGGGCGTGGAG CAGGAATTTCTCAAGAAGTTCGAGCACAGCCTGCAGTCCTACAGGAAAGG GGTCGAGGTGAGCGAGAGTCGATGCCGTCGGCCTCATTCTGTTTGTGGAC TCTCGAAGCGTGTAGATCGTGCTACCGTAAAGTACACCGTTGCCGCTGAG TAGCAACGGTAGGAAGGTTAACCTGCAGCAGACGTGAACTCAAGTTGTTT GCTCCCTCTGTCAAACCACCAATCGCACATCTTTGTCACGAACGCTTCGA TGAGTGTTGAGTTGCTTTACGGTGCTCTCTCTGGAACGTTTTGCAGGTGG CGCAGAAGTACCTGGGAGGAAACCACGCAGTCACCGTCACTCTCCGCAAC TCCACCATGGCCGCGCGCCGAGCAATAAGCGCAAGAGATAGTAGAACACG AGAAGAACTTATTCGTCGCAGCAATCGGAGACCACGTGGGGGCGGAGATG GGGGAGGAGCAGAACGGGTGGGCCGGCCACGGCAAGCTAAGTCTAACGTA GGAACGGGCGTGCTGAGTCACGCCCTGTCCACCGCCAGGTGAGCACGGGA GATATGGCAAGCACTCCTTCGGTAGCGTGGTAGTGCTGCCTGCAACTCGT GGGACCCCGTTTGCGACCCTCTTTTCTGAGGGAGTGACGAATTTTCGTTG TTTTTCTTTTCATTTCGACCAGAACTTCATTATCGTCGGTCTCGATCACC TTTTGGGAGTTTCAATTCTCCCCATTCAACCTTTATAAGTATGCTTGGCG GGGGGAGAAAGGGTCAAGTCGGGGGCCATCCATCGCTCCGAACCCCCGTC CGCGATGCGTGTCCTCTAATCTGTGTCTCCGTTCTCAGTGCATGCTCCTC TTAGCACGTAAAACAGCACAATTATTCAAAACAATACATCTCGAGCAAGG AGGACCCGAACTGGCGAGAATTATACCTCTCGGGGGCCAATTTATCAAAA CCAAACAACCTGAACCTAGCCACACCATCTCAAGGCTTAAATGGGACATG GAATACGTCCTCACTCAACCGCAACGCCTCTTACTTTTATCCTCTCTACC GTTTGCATGCTACGATGCCCCTACTTTGCCACCGTAGTGCCTCCTCGCAG CAGCAGCAGCAGCAGCAGCGGCAGCAGCCCGAGCATCAATTCGAAAGTCT ACGCGAAAGTACACAAGAGGGTGAGGATGAAGGGAACATCGAGGGATGCG ACGAAGAGAAGGACGAAACTGATCGCGTCGCACGGGGGCTTATGGAGAGG ACGACGCTAGAGCCCGCTCCACCACCGGTCGCAGCGGTAGCGGAGGCTAC CGTGGAAACGGTGGGGGCCGTGGCGGTGGCGGCGACGGGGGAGAACCTGC TCCAGGAGCCGAGTGGGCTATCGGGCAGAAATGAGGGCAACCTACTCGAT GGCGACTCAGCCCTTGGAGGGATGATTTCGCCACGACCAGCAGAGCAGGA CGGCGATATGCAGGAAGAGCGTGCCAGCGCGATCGTCGGGGTTTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig182:164520..168215+

>mRNA_P-littoralis_Contig182.40.1 ID=mRNA_P-littoralis_Contig182.40.1|Name=mRNA_P-littoralis_Contig182.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1335bp|location=Sequence derived from alignment at P-littoralis_Contig182:164520..168215+ (Pylaiella littoralis U1_48)
ATGGCGACGGAGAGCGTAGAATTACTCGCGTTACAGCGCATTGACGAGAC
ATGCATGCAACTTCAGCAGCAGGGAAATTACTTGCAAGCGCTGGAATGCA
TGGAGCGGGGGCTTGTGCTTCGGCAGCACTTCTTCGGCAGCGACAGCGAG
GAGGTGTGGAGCGCCTGCAAAATCGTCGGCGAGATGTGCAACCTTCTCGC
CATGACCTACCTGCAGCAGGAGGACTTCGGCATGGTACTCGAGTTGCTGA
AGAAGGCGGAAATTCTCACAGAGAGGGATGACGCCGGCCGGGCGGTCACA
TATAATAATTTGGCGTGCTACTATCGCCGCCGCGGGAAGCTGCATTCCGC
GCTTCAGTACCTCCACAAGGCTCTCAAAATTGAAGCCAAGATGGGCTCGC
GCGTGGAGCACCCCGCAGATACCCACCTTAACACGTGCGCGGTGCTTTCG
CAAGTCGGGCGACATCAGGGGGCCTTAGAGCACGCGCAGTCGGCCCTAAT
CCTTCTGCAGGAAGAACTTTTCGGGGGTGGCGCAGCGATGGGGGGAGATG
GAGGAAGGGAAGATCAGCCCCCCCGCGCCGATCGAATCGCCGTGCTGGCG
ATTGCCTACCACAACATGGGCGTGGAGCAGGAATTTCTCAAGAAGTTCGA
GCACAGCCTGCAGTCCTACAGGAAAGGGGTCGAGGTGGCGCAGAAGTACC
TGGGAGGAAACCACGCAGTCACCGTCACTCTCCGCAACTCCACCATGGCC
GCGCGCCGAGCAATAAGCGCAAGAGATAGTAGAACACGAGAAGAACTTAT
TCGTCGCAGCAATCGGAGACCACGTGGGGGCGGAGATGGGGGAGGAGCAG
AACGGGTGGGCCGGCCACGGCAAGCTAAGTCTAACGTAGGAACGGGCGTG
CTGAGTCACGCCCTGTCCACCGCCAGTGCCTCCTCGCAGCAGCAGCAGCA
GCAGCAGCGGCAGCAGCCCGAGCATCAATTCGAAAGTCTACGCGAAAGTA
CACAAGAGGGTGAGGATGAAGGGAACATCGAGGGATGCGACGAAGAGAAG
GACGAAACTGATCGCGTCGCACGGGGGCTTATGGAGAGGACGACGCTAGA
GCCCGCTCCACCACCGGTCGCAGCGGTAGCGGAGGCTACCGTGGAAACGG
TGGGGGCCGTGGCGGTGGCGGCGACGGGGGAGAACCTGCTCCAGGAGCCG
AGTGGGCTATCGGGCAGAAATGAGGGCAACCTACTCGATGGCGACTCAGC
CCTTGGAGGGATGATTTCGCCACGACCAGCAGAGCAGGACGGCGATATGC
AGGAAGAGCGTGCCAGCGCGATCGTCGGGGTTTAG
back to top