mRNA_P-littoralis_Contig182.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.33.1
Unique NamemRNA_P-littoralis_Contig182.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig182.33.1 vs. uniprot
Match: D8LLZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ0_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.230e-61
Identity = 141/267 (52.81%), Postives = 169/267 (63.30%), Query Frame = 1 
Query:    1 QARVSSGSSSKAMKLLGLSKLPPDASRAEHLALIEQHRSVRKERAKSTSPAAGSIEEGGNIAMVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEDGEQGVSLGHHQHLNSEWLDMREASLKLTPADLDDQFLKRITDLMNQFPEPPTRD-PTTAITDLNSPSSIIGGWGKGDSSRRGLHMPKTSSQRRATGSVGSILSLSQEIVKPRQNPIFQQQFDNRRGA--RGLDSPMRIRYSKPEDEFSL 792
            +A+ SSGSSSKAM+LLGLSKLPPDASR EHL LI QHRSVRKER KS+SPA  S++ GG+ + VM  XXXXXXXXXX                                     D E+GE+ V+  HH H  SEWLDMRE+SLKLTP D+D+QFL+ +  LMNQFP PPTRD  T A+TDL SPS+   G  KGD  RRGL MP+ SSQRR     G     ++ +    QNP++Q   ++RRG   R +DSPMRIRY+K  DEFSL
Sbjct:    7 EAKGSSGSSSKAMRLLGLSKLPPDASRTEHLTLIRQHRSVRKERVKSSSPA--SLKRGGSYSRVMSSXXXXXXXXXXEASFSSRNPGEADGTSVPSSAEGGKLTIQQPQYP---DREEGEE-VATRHHHHQPSEWLDMRESSLKLTPTDVDEQFLRSVESLMNQFPAPPTRDHATAAVTDLTSPSTAALGRFKGDG-RRGLQMPRPSSQRRGVSGAGG----AEHMFHSGQNPMYQHHMESRRGGVVREIDSPMRIRYAK--DEFSL 260
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BLAST of mRNA_P-littoralis_Contig182.33.1 vs. uniprot
Match: A0A6H5J8C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8C9_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.800e-46
Identity = 132/255 (51.76%), Postives = 154/255 (60.39%), Query Frame = 1 
Query:   37 MKLLGLSKLPPDASRAEHLALIEQHRSVRKERAKSTSPAAGSIEEGGNIAMVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEDGEQGVSLGHHQHLNSEWLDMREASLKLTPADLDDQFLKRITDLMNQFPEPPTRD-PTTAITDLNSPSSIIGGWGKGDSSRRGLHMPKTSSQRRATGSVGSILSLSQEIVKPRQNPIFQQQFDNRRGA--RGLDSPMRIRYSKPEDEFSL 792
            M+LLGLSKLPPDASR+EHLALI QHRSVRKER KS+SPA  S++ GG+ + VM XXXXXXXXX                             XXXXXXXXXX               H  SEWLDMRE+SLKLTP D+D++FL  I  LMNQFP PPTRD    A+ D+ SPS+   G  KGD  RRGL M + S+Q R          +S       QNPI+QQQ ++RRG   R +DSPMRIRY  P+DEFSL
Sbjct:    1 MRLLGLSKLPPDASRSEHLALIRQHRSVRKERVKSSSPA--SLKRGGSYSRVMSXXXXXXXXXEASFGSRNPGEADSASVPPSAEGEKLTIQXXXXXXXXXXXXX-XXXXXXXXXXDHQPSEWLDMRESSLKLTPTDMDERFLGSIESLMNQFPAPPTRDHAAAAVVDVTSPSTAALGRFKGDG-RRGLPMSRPSTQWRGVSGADGAEDMSHSW----QNPIYQQQMESRRGGAVREIDSPMRIRY--PKDEFSL 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLZ0_ECTSI1.230e-6152.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8C9_9PHAE4.800e-4651.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:153550..154410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size795
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002190.1
Cds size795
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.282048-CDS-P-littoralis_Contig182:153549..1537041680789878.282048-CDS-P-littoralis_Contig182:153549..153704Pylaiella littoralis U1_48CDSP-littoralis_Contig182 153550..153704 +
1680789878.2945843-CDS-P-littoralis_Contig182:153770..1544101680789878.2945843-CDS-P-littoralis_Contig182:153770..154410Pylaiella littoralis U1_48CDSP-littoralis_Contig182 153771..154410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.33.1prot_P-littoralis_Contig182.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 153550..154410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.33.1

>prot_P-littoralis_Contig182.33.1 ID=prot_P-littoralis_Contig182.33.1|Name=mRNA_P-littoralis_Contig182.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp
QARVSSGSSSKAMKLLGLSKLPPDASRAEHLALIEQHRSVRKERAKSTSP
AAGSIEEGGNIAMVMGGGGGGGGGRRRKGGGREGGANSKPEHRGGGGQEQ
CPDEDSGGGAGGGGDMEDGEQGVSLGHHQHLNSEWLDMREASLKLTPADL
DDQFLKRITDLMNQFPEPPTRDPTTAITDLNSPSSIIGGWGKGDSSRRGL
HMPKTSSQRRATGSVGSILSLSQEIVKPRQNPIFQQQFDNRRGARGLDSP
MRIRYSKPEDEFSL*
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mRNA from alignment at P-littoralis_Contig182:153550..154410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.33.1 ID=mRNA_P-littoralis_Contig182.33.1|Name=mRNA_P-littoralis_Contig182.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig182:153550..154410+ (Pylaiella littoralis U1_48)
CAGGCCAGAGTCTCCTCGGGATCTTCCTCAAAGGCGATGAAGCTTCTCGG
GCTGTCGAAGCTTCCGCCCGACGCCTCTCGCGCGGAGCACCTTGCGCTCA
TCGAGCAGCACCGCTCGGTTCGAAAGGAGCGCGCCAAGTCGACCTCGCCA
GCAGCGTCCCTGAAGCGGGGCGCCGGCTTTTCTTCTGTGCGGTCGGCTTC
TTTCCGCGTGGCCGGCTTAAGCGGCTCGATCGAGGAAGGTGGGAACATCG
CCATGGTTATGGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGCAAA
GGAGGAGGCAGAGAAGGAGGGGCAAATTCAAAGCCAGAACACCGAGGGGG
AGGGGGACAAGAGCAGTGCCCAGATGAAGATAGTGGTGGAGGCGCAGGCG
GCGGCGGCGACATGGAGGACGGGGAGCAAGGGGTGTCGCTCGGCCACCAT
CAACACCTCAACTCCGAATGGCTGGACATGCGGGAGGCTTCGCTCAAGCT
GACACCTGCAGACCTAGACGATCAGTTTCTGAAGAGAATCACGGACCTCA
TGAACCAGTTTCCGGAACCGCCGACCCGCGACCCTACCACCGCCATCACC
GACCTGAACTCCCCGTCATCGATAATAGGTGGTTGGGGAAAGGGAGACAG
CAGCAGGCGCGGGCTTCATATGCCAAAGACAAGCAGCCAGCGGAGAGCTA
CGGGCAGCGTGGGGAGTATTTTGTCGTTGAGCCAAGAAATTGTTAAGCCT
AGGCAGAACCCGATATTCCAGCAGCAGTTTGACAACAGGCGGGGGGCGAG
AGGGCTGGATTCGCCCATGAGAATTCGCTACTCTAAGCCGGAGGATGAGT
TCTCGTTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:153550..154410+

>mRNA_P-littoralis_Contig182.33.1 ID=mRNA_P-littoralis_Contig182.33.1|Name=mRNA_P-littoralis_Contig182.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig182:153550..154410+ (Pylaiella littoralis U1_48)
CAGGCCAGAGTCTCCTCGGGATCTTCCTCAAAGGCGATGAAGCTTCTCGG
GCTGTCGAAGCTTCCGCCCGACGCCTCTCGCGCGGAGCACCTTGCGCTCA
TCGAGCAGCACCGCTCGGTTCGAAAGGAGCGCGCCAAGTCGACCTCGCCA
GCAGCCGGCTCGATCGAGGAAGGTGGGAACATCGCCATGGTTATGGGAGG
AGGAGGAGGAGGAGGAGGAGGACGACGACGCAAAGGAGGAGGCAGAGAAG
GAGGGGCAAATTCAAAGCCAGAACACCGAGGGGGAGGGGGACAAGAGCAG
TGCCCAGATGAAGATAGTGGTGGAGGCGCAGGCGGCGGCGGCGACATGGA
GGACGGGGAGCAAGGGGTGTCGCTCGGCCACCATCAACACCTCAACTCCG
AATGGCTGGACATGCGGGAGGCTTCGCTCAAGCTGACACCTGCAGACCTA
GACGATCAGTTTCTGAAGAGAATCACGGACCTCATGAACCAGTTTCCGGA
ACCGCCGACCCGCGACCCTACCACCGCCATCACCGACCTGAACTCCCCGT
CATCGATAATAGGTGGTTGGGGAAAGGGAGACAGCAGCAGGCGCGGGCTT
CATATGCCAAAGACAAGCAGCCAGCGGAGAGCTACGGGCAGCGTGGGGAG
TATTTTGTCGTTGAGCCAAGAAATTGTTAAGCCTAGGCAGAACCCGATAT
TCCAGCAGCAGTTTGACAACAGGCGGGGGGCGAGAGGGCTGGATTCGCCC
ATGAGAATTCGCTACTCTAAGCCGGAGGATGAGTTCTCGTTGTAG
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