mRNA_P-littoralis_Contig182.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.10.1
Unique NamemRNA_P-littoralis_Contig182.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 8.980e-121
Identity = 226/410 (55.12%), Postives = 248/410 (60.49%), Query Frame = 1 
Query:  181 PQSLLAQNDNNDGGDYGARRSHNDGRVDGRVVDSISRQQSVLLLLRREALRARGGGVLGAWKK-QRNK---GVNQRALPAPEALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEV--------------------------------------------------------------------------------------------------------EYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLPRMV 1086
            P + LA+N N D    G  R          +  + S      ++L    + ARGGG+  A+ +  RNK   GVN+RA+P PEALSRYP+ K+PGGLVR LDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEV                                                                                                        EYV ICVVTA+ TFVLWP+LSRVSVLSHMGTG+DGWLSQAID VGLASFAVA TQNGIRR CHPG T+VICCITCSGGGILRDVLTSSPVMALS HAQMYVSTAA GS AYL ARR ++DPL RIC GFFTV+ILRLLACL+DLRLPRMV
Sbjct:   31 PPTPLARNHNGDSDPGGQDR----------IFPNSSSAPRQTVVLPGTVVHARGGGINVAFTRGSRNKWQDGVNRRAIPTPEALSRYPNFKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVGVRGAWIVLFFCGAGDLVGRSLCPTSPCAFLRFLACLDAWVELALRRFCSVDGGVGCLPSLALLFLIGRIWRCLLMFVLRHSSVVWPVAVLLSWTPLLLPLSQVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKDPLFRICVGFFTVIILRLLACLYDLRLPRMV 430
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BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA)

HSP 1 Score: 256 bits (653), Expect = 4.820e-76
Identity = 135/245 (55.10%), Postives = 170/245 (69.39%), Query Frame = 1 
Query:  349 VLGAWKKQRNKGVNQRALPAPEALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLPRM 1083
            V  AW K +N   NQ  LP  E+++RYPSL++ GGL+R LDY+GTV+FA  GA  AG  GM+LLGCI +GV+ A GGGT RDLLLGQTPVFWL EVEY+ +C+VT+I TF  WP L  + +LS  G+  DG L + +D +GL +FAV GTQ+GIRR  HP  TVVI  ITCS GG+ RDV+T +P+  +  HA++Y +TAA GS AYL AR    DPL+R+ AGF   V  R  A   DLRLP +
Sbjct:   26 VKKAWLKIKN--ANQGDLPR-ESMTRYPSLRSAGGLLRSLDYLGTVAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLPTL 267
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BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.670e-70
Identity = 131/185 (70.81%), Postives = 136/185 (73.51%), Query Frame = 1 
Query:  496 MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLL 1050
            MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE                                        AID +GLASFAVA TQNGIRR CHPG T+VICCITCSGGGILRDVLTSSPVMALS HAQMYVSTAAFGS AYL ARR ++DPL R+CAGFFTVVILRLL
Sbjct:    1 MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE----------------------------------------AIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRYSKDPLFRVCAGFFTVVILRLL 145
[Close]
BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 2.140e-53
Identity = 104/231 (45.02%), Postives = 144/231 (62.34%), Query Frame = 1 
Query:  385 VNQRALPAPEALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLP 1077
            +N+   P  + L+RYP+ ++P G++R LDY+GT  FA+SG  TAG  GM+LLGCI VG + ATGGGTVRD+LLG TPVFW+ E EY+ +C+ T +  F LW      S L+  G   D  L   +DA+G+ +F   G Q G+R+G    + V    +T + GG++RDVL S P   L  H ++Y STA  GSA Y+  +     P+VRI +GF + V LR+LA   D+RLP
Sbjct:   61 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLW------SYLAERGVRDDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 285
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BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 9.960e-53
Identity = 104/231 (45.02%), Postives = 145/231 (62.77%), Query Frame = 1 
Query:  385 VNQRALPAPEALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLP 1077
            +N+   P  + L+RYP+ ++P G++R LDY+GT  FA+SG  TAG  GM+LLGCI VG + ATGGGTVRD+LLG TPVFW+ E EY+ +C+ T++  F LW      S L+  G   D  L   +DA+G+ +F   G Q G+R+G    + V    +T + GG++RDVL S P   L  H ++Y STA  GSA Y+  +     P+VRI +GF + V LR+LA   D+RLP
Sbjct:  143 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHETEYLWMCLATSVGVFFLW------SYLAERGVRNDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 367
[Close]
BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.710e-49
Identity = 102/222 (45.95%), Postives = 129/222 (58.11%), Query Frame = 1 
Query:  412 EALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLP 1077
            + L+RYPSL +P G++R LD  GTV FA SG  TAG  GM+LLGC  VG + A GGGTVRDLLLG TPVFW+ E EY+ IC+  A+ TF  +      S L+  G   D  L    DA+G+ +F V G QN +RR     I V     T + GG++RDVL   P   L  HA++Y STA  G+  Y+  RR    P++RI  GF     LR+ A    LRLP
Sbjct:   22 DGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTY------SALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLP 237
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BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A7S1TDV4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDV4_9RHOD)

HSP 1 Score: 177 bits (449), Expect = 2.360e-47
Identity = 100/224 (44.64%), Postives = 136/224 (60.71%), Query Frame = 1 
Query:  412 EALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLPRM 1083
            + + R+P+    GGL+R LDY GT+ FA SG   A   GM+LLGC  VG + A GGGTVRDL LG  PVFW+VE EY+++C++T+  T  LWP+L+R S  S     ++ +     DA GL++F V G QNGIR G  P I+VV   +T + GG++RDVL   P   L  HA++Y S AA G+A+Y+ A R       RI  G    +  R+ A  +D+RLP M
Sbjct:    6 DGMPRFPNWSA-GGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 224
[Close]
BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP)

HSP 1 Score: 179 bits (454), Expect = 2.250e-46
Identity = 96/222 (43.24%), Postives = 134/222 (60.36%), Query Frame = 1 
Query:  412 EALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLP 1077
            +++ RYP L +PGG +R  DY+GT  FA++GA TA   GM++LGC  VG + A GGGT RDLL+G  PVFWL+E EY+ I V T++  F  WP +S       +G   D +    ID+  L +F+  GT NGIR G +P I +V   +TC+ GG++RD     PV  L  +A++Y +TAA GS AY+ AR      ++RI  G  +  I+RL A  +  RLP
Sbjct:  122 DSMPRYPDL-SPGGFLRAFDYIGTSIFALTGALTAASGGMDVLGCTVVGTITAVGGGTTRDLLMGARPVFWLIESEYIAIAVATSLLAFFFWPDVS-----DALGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRDTFLKRPVRVLHSYAEIYATTAAVGSIAYMAARAMQLPLVLRISLGLSSTFIMRLWAMKYGTRLP 337
[Close]
BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A7S1XFC8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFC8_9RHOD)

HSP 1 Score: 177 bits (449), Expect = 3.070e-46
Identity = 100/224 (44.64%), Postives = 136/224 (60.71%), Query Frame = 1 
Query:  412 EALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLPRM 1083
            + + R+P+    GGL+R LDY GT+ FA SG   A   GM+LLGC  VG + A GGGTVRDL LG  PVFW+VE EY+++C++T+  T  LWP+L+R S  S     ++ +     DA GL++F V G QNGIR G  P I+VV   +T + GG++RDVL   P   L  HA++Y S AA G+A+Y+ A R       RI  G    +  R+ A  +D+RLP M
Sbjct:   96 DGMPRFPNWSA-GGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 314
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BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Match: A0A6T5MA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MA33_HETAK)

HSP 1 Score: 172 bits (437), Expect = 1.700e-44
Identity = 113/283 (39.93%), Postives = 152/283 (53.71%), Query Frame = 1 
Query:  271 VVDSISRQQSVLLLLRREALRARGGG----VLGAWKKQRNKGVNQRALPAPEA---------LSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTFVLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHPGITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYARRCAQDPLVRICAGFFTVVILRLLACLFDLRLPR 1080
            +   +S   S L L+ R  L+  G G    V G ++ +R    N+    AP A         + R+PS    GGL+R LDY GTV FA+ G+ TAG+ GM+LLGC  VG + A GGGTVRDLLLG  PVFW++E EYV++ +  A   F  W  L     L      +  W     DA G+ +F+V G QNG+R G HP + VV   IT + GG++RDVL   P   L   +++Y +TA  G+AAY  AR  +  P  +I  GF   V  R  A  +D+RLP 
Sbjct:   44 IKQFMSSTGSPLPLVTRPTLKQLGLGNRSLVKGWFQPKRFNSTNKPPAEAPPAAKPPVHTDGMPRFPSTSA-GGLLRGLDYFGTVVFALGGSVTAGLAGMDLLGCTIVGTVTAVGGGTVRDLLLGNFPVFWMLETEYVLLSLACAWAGFFGWDYLHEHWHLEENSDILRWW-----DACGVGAFSVIGAQNGLRAGLHPAVAVVCGMITATFGGMIRDVLCQKPPRILHSQSEVYATTALIGAAAYTAAR--SLPPAAKIGLGFSAAVASRYAAWTYDIRLPN 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCP2_9PHAE8.980e-12155.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGC7_9STRA4.820e-7655.10UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
D8LLZ7_ECTSI1.670e-7070.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LE41_ECTSI2.140e-5345.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGY7_9PHAE9.960e-5345.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDZ5_9STRA2.710e-4945.95UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1TDV4_9RHOD2.360e-4744.64Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4Z897_PORPP2.250e-4643.24UPF0126 membrane protein n=1 Tax=Porphyridium purp... [more]
A0A7S1XFC8_9RHOD3.070e-4644.64Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6T5MA33_HETAK1.700e-4439.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:71529..77301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE41
PFAMsACT_6,UPF0126
Model size2271
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue2.76e-58
EggNOG OGs2B6TB@1|root,2S0MY@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised domain UPF0126
Ec32 orthologEc-14_002260.1
DescriptionUPF0126 domain
Cds size1011
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.10.1prot_P-littoralis_Contig182.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 71607..76119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789877.652069-UTR-P-littoralis_Contig182:71528..716061680789877.652069-UTR-P-littoralis_Contig182:71528..71606Pylaiella littoralis U1_48UTRP-littoralis_Contig182 71529..71606 +
1680789877.713688-UTR-P-littoralis_Contig182:76119..773011680789877.713688-UTR-P-littoralis_Contig182:76119..77301Pylaiella littoralis U1_48UTRP-littoralis_Contig182 76120..77301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789877.6672184-CDS-P-littoralis_Contig182:71606..719531680789877.6672184-CDS-P-littoralis_Contig182:71606..71953Pylaiella littoralis U1_48CDSP-littoralis_Contig182 71607..71953 +
1680789877.6783001-CDS-P-littoralis_Contig182:73804..740121680789877.6783001-CDS-P-littoralis_Contig182:73804..74012Pylaiella littoralis U1_48CDSP-littoralis_Contig182 73805..74012 +
1680789877.687183-CDS-P-littoralis_Contig182:74723..749751680789877.687183-CDS-P-littoralis_Contig182:74723..74975Pylaiella littoralis U1_48CDSP-littoralis_Contig182 74724..74975 +
1680789877.7005525-CDS-P-littoralis_Contig182:75915..761191680789877.7005525-CDS-P-littoralis_Contig182:75915..76119Pylaiella littoralis U1_48CDSP-littoralis_Contig182 75916..76119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.10.1

>prot_P-littoralis_Contig182.10.1 ID=prot_P-littoralis_Contig182.10.1|Name=mRNA_P-littoralis_Contig182.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=337bp
MLLLLLRTFVLALIWSLGISCAVSSATTQPHTWGPQSLLAQNDNNDGGDY
GARRSHNDGRVDGRVVDSISRQQSVLLLLRREALRARGGGVLGAWKKQRN
KGVNQRALPAPEALSRYPSLKTPGGLVRLLDYVGTVSFAMSGAATAGMRG
MNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVVICVVTAITTF
VLWPILSRVSVLSHMGTGMDGWLSQAIDAVGLASFAVAGTQNGIRRGCHP
GITVVICCITCSGGGILRDVLTSSPVMALSEHAQMYVSTAAFGSAAYLYA
RRCAQDPLVRICAGFFTVVILRLLACLFDLRLPRMV*
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mRNA from alignment at P-littoralis_Contig182:71529..77301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.10.1 ID=mRNA_P-littoralis_Contig182.10.1|Name=mRNA_P-littoralis_Contig182.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5773bp|location=Sequence derived from alignment at P-littoralis_Contig182:71529..77301+ (Pylaiella littoralis U1_48)
GCTGTCTCCTTCCCTCTGCACCAGCTGCTGGGCTTCTCTCTGCATGCATG
CGAGGATTGGAAGGCCATTCACGATACAATGTTGTTACTGCTGCTGCGTA
CCTTTGTGCTCGCTCTTATATGGTCCCTGGGCATATCATGTGCGGTATCT
TCTGCGACAACTCAACCGCACACTTGGGGACCACAGTCGCTCTTGGCCCA
AAACGACAACAACGACGGGGGTGACTATGGAGCAAGGCGAAGTCACAACG
ATGGCCGCGTTGATGGCCGCGTCGTAGATAGCATTTCACGACAGCAGTCG
GTGCTGCTACTGCTGCGACGGGAGGCTTTGCGTGCTCGTGGTGGCGGCGT
TCTTGGTGCTTGGAAGAAGCAGAGGAACAAGGGCGTGAACCAGAGGGCAT
TACCTGCTCCAGAGGCGTTGAGCAGGTACGGTGATCTCAGCGTACACAGC
AGCAGTACAGCCGCTGAGCAGGTACGGTGATCTCCGCGTACACAGCAGCA
GTACAGCCACTGAGCAGGTATGGTGACCTCCGTGTAAACAGCAGTACAGC
CGTATGTGTCGTATATTTGCACTGGACTGGTTCCCTATTCCGAAGCGGCT
GTTGCAAGCCGCGGAAAACATTGTGTGCAGGAACGTTGCACCATCGGTTA
CGAGAGCGATACTTTCCTCAGTCAAGAACATGCGCAATGAAGACCACACA
ACGACTTTAGTAGGTATCGTGTGACCGCATCACCGCATCAGTCAACCCAC
TCTTGAAACGCGGTATCATATACTCCGGAGTACATCAGTCTTTATTTACA
TGCGAACGATGCTTCTTATATTCGTATCACGTACAAGTTTATATCAGGAG
GTATTTTACACGTGTGCATCTTTCCGCATCTCCGGTACACCATGCGAGCT
TGTGTATTTGCCCACGTGCGCCATTACAATCAAAATGTCTTTGTTTGATC
TCGTCCCATTTTTCGCCAGTTTACCTTTTTCTTTGTTTCGGCATGAGTGG
GGGTAAATGAGTCGGGTCTCACGGAAGGAAGGCCGCACATCAGGAGTTTT
TGTTTTACGAGCACATCTCATATATAAGTCTCAGGGCAGAACACTCTGTC
ATCCTATAAGTGGCGGGTACAGTAACGAGTACTCTTACCAAACTCGAGCA
CTGCTGTATGATACAGCAACGGTACGGCTGTAGCATAATACCGGTACGCG
ACGATACATATGCTGATACATGCGTATGCTGTGGATGAAACCTCGAGTCT
ATGTTGTGTTTGCGTCATCGCACGACGATCTGATTGAGCATACATTGGAA
GAGAAAAATTGACTCTCCTCGAAAGGGAGCAACCGAGGACACCGCCACAC
ATCATGCCGCCGAACAGCATCCCCGACTGCGATCTATTGTGCTGCTATTT
ATCATAGTCGATGCGATCACTTTCCCTCTCGCAATCTCTCTGACCGCCGG
TGTATTTAGCAGCACCGTATCTGCACAGTATCGTTATCGTGCTGTGCGCG
CACTCCGAACACCGGTATAAATACAAACACCCCCGTGAGCTGGCATATTC
GCGGGCTTATCTTGCGGTACGTGGTAGGATCTCAATGAAGAAAGCCCACA
CTGACTTGTCTGTCCGCTGTGTGAGTTGCATGTGTGCGGGAGATATCTTC
AAGAGAGACCTCCACGTCTGTTTAATGTGGACGTTCGCCCTCATACTACG
AGTCAAATTTCGAATGGAACTCATCCACAGATGGAACATGGAGTCTACCT
CATGGGCGATTCGACAGATACCCCGCTCTTAATGGCCAATCCGAGGCTCC
TGCACCTCCACGAGATGGCCCAACATAATTCTTGTCGGCATCGCCTCTGG
TATTCATCCCTTGTGCGATGGAGATGCAGGGCACAGGAAATCCAGTCGAA
CAAGAAGGTTAAAGTTCCGTGTATCATCTTCCGTAAAACTCGGCGGCAGT
GCCCCATATAGCATGTGTGTGCGTGTACCCACAATTCAGCAGGCTTCATG
ACGCCCTGTAGACACCAACACCGGCAGGCGGCCTGCTGCGATTCTTCTAT
GTAGGGGGTTGAATGCTACAGACACCGAAAGGGAACTGGCACACACACAA
ACGCACGCACACACATACACTCGCCGGGGGTTTGTTCTTATTTCGGACAA
TGATCCGTTTGTTGACGGTGTGTGTGTATGACAGTTGGTGCGGATATCCT
GCCCGCGCTTCCCTTTTCCGAACCTCATCGAACGGAACGAAACTGACCTA
CGGTATGTACCGACGGCTCAAAACAGGTACCCGAGCTTGAAGACCCCGGG
GGGATTGGTGCGACTGTTGGATTACGTCGGGACTGTCTCCTTCGCGATGA
GCGGGGCAGCCACGGCGGGCATGCGAGGGATGAACCTCTTGGGGTGCATC
TTCGTTGGGGTATTGGCGGCGACGGGAGGGGGTACCGTGCGAGACCTGCT
GCTTGGCCAGACTCCGGTGTTTTGGCTAGTCGAGGTCGGTCCACGTTCGA
CGTCCACGAGGTTGACTTAGTCTAGTTTGTAACGGTTCCTTTAGTAACTG
TTGGTACCTTTCTGCTTGCTTGTTGCACGTGCTTGCTGTTCCCTCGTTTC
TGTTGTTTCCCTTGTTTTGCATCTGCTTGCCCTGCATTTTCTTCCTTCCT
TGCGCCTTTCCTGATTTATTTTGGGTAAATCTGCCTGAGCGGGTGGGTTT
ATCGGTTTGCTCGTTTTGCATGTGGAACGTGACCTTCTTTTGCATGGCGC
ACACCGGTCGCCGAGATGGTCTAGTGGTTCCCTCGTTTACCTACAAGTGG
TAAGGTCGCAGGTTCGATTCTCTTTTGAGAGGTTTTCTTGCGACTTTACA
GTGGAAAGCGAATTACTCATGAGTTAACAGAGGGAAGGGATTGCTGTACC
CGACTCGCATTAAAAACCAAAGGCACGTACCGCAGGAGGAAGGTTTGGGC
AATAAAACAGAATAAAAAGTAAAAAAGCTCGTGTGTGACCTTCCTTCTGT
GTGACCCCGGCTGACGCACCCACTTAATACCGAAAGGTGTAGACTGGTGC
CCAGAATAAATGGGATACATCAACTACAAGGGTGTGGCACGTGAAGAAAA
CAGGTCTAAGTATTAACACTTTAGATCTCCCCTCCGTGTGCCCCCCCCCA
CCCCGCCCACCTCCACCCCCACCTCCACCTTCACCTGACCAACAGGTCGA
GTACGTTGTTATCTGCGTAGTGACAGCAATTACTACCTTCGTGCTTTGGC
CGATTCTGTCCCGAGTTTCCGTCCTCTCGCACATGGGTACCGGCATGGAC
GGGTGGCTGTCTCAGGCGATAGACGCGGTCGGGCTGGCGTCCTTCGCGGT
GGCGGGAACGCAGAACGGCATCCGTCGGGGGTGCCACCCGGGCATCACCG
TTGTGATATGCTGCATCACTTGTTCCGGAGGAGGCATCCTGCGTGATGTA
CGTGAACCAAGAGCTTGAAAATTGGTTGCCGTGGCCTGCGTGTATACAAC
AGTTGCATGCGTGCGTGCACATTGTAACAAATAAATTGTCATGTGCTCCA
TGCGTCAAATCAAGTCGTCATGTGTGCGTGCATGAGATTGGTTGTATGTG
TGCATGCGTTATACATTCTCTGCATGACGTATAGCCAGCTGTGGCGTTCA
TTTTGCTGTGTCACGGGCGGGTTCGCTCAGTTTGGTTTGATTGCACGTAC
ACATACACGCACATTGTATCGGGCTGAGGTCTCGGCTGGTTCCGGTCGAA
CCACTTGGTTGACCAACTTTGCACAAATCTGACGACAGCTTTGGTCCTGG
AACGGCGAATCGACCCCGATTTTCCTTGCGGCTCAGACGAATCGGAGTCG
CGATCCGTGTCTGCCTCGAATATGTACTTCGAGTACTTCGCAAGTATACT
CCTAGTCGGGCTCGGTCCGCCGCTCCAGGACCGAAGCTGCTGTCGGATTT
GTGCAATGTTGTGAAAGATCGGCACCGGAGCCACCACACAGAGTAGGCGG
GTAAATGTTGCAAGTCGCGATACTGCTGTTGCATCTCGATTTTTGAGGAG
GGAGGGGGAAAGCGCGGGGTGGCATCTCGTTTGTTCGACACACGCGTGGC
TCGGTGTTTGTGGCGTACTCCCTGTCCCACGCCAAAGAGGCAAGCGTTTT
CGGGTTTTCGTCATGGGGAGAAAGATTTGGCTGCAACTTTAGCGAAACCA
CTCGCTACACCACTCATGAGCGAGAGCGAAAATCCTGCCACGCGTAGCAC
CAGCACCACCCCTACCACCCCCGCAACAGTAGCGTCAGCAACAGCAATGA
CAGATGTACGTATGACCTTTAGGACACTACTAACCCGTTTTCTTTCGAAT
TTTGCCCCGCCTTAAAAAACAAAAAATAAAAAATCAGGTTCTGACTTCTT
CGCCGGTGATGGCTCTCTCTGAGCACGCCCAGATGTACGTCAGCACGGCG
GCGTTCGGTTCCGCCGCATACCTCTACGCTCGGAGGTGTGCACAAGACCC
GCTCGTGAGAATCTGCGCGGGGTTCTTCACCGTGGTAATCTTGCGCTTAC
TGGCATGTCTATTCGACCTCCGACTCCCCCGCATGGTGTAATATTTATTT
TTTGTGGTTGTGCGTGGTGTCTCCGTGGGATGGTATGCTATGTATGATGT
ACTTCGTGTTTTTTATTTTACAATCGTTTTTGGTTCGTCTTTTTTCTGTT
GCTGCAGTATGTATTTGGGAGCCGACAAGGTTGTGCATGTAGCAGCGACA
TGCAGCGTTGATTGACTGACCTTTTGAGGCCGCACCCGAGAGTTTATTCA
GCGAGGAGAAATCCGAGGACTTTGGCATGGCATCACACAGACAAGTGAGA
AGAAAAGCGCTACAACCCAAATAGTGGAATCAAGAGAGGTGTAACAGTGA
ATCATTTCGGTTTTTTTGTTTCGTTTCTCCGGCACGCAAGCAAGCGGTGC
TGCTGGTTGAACACCCCTGTTGTCGGGTGTATGGATTGGCCTGGAGGTTA
TTGAAAGGAGGCGGGGGGGAGTTCGATGTGGTTCGTTGTACTATGATTAC
GCCGCTCGTGGTGGAAATTTGTTGCGGGTGTTCGGGTTAGGTTTAATGCA
ATATCACCCGATCGGGGGGTCTTGTGCCTGTTGGTGCTGCTTGTGAGATG
CACGTGCTGTCCGCACGTACATGTGGGTGTTTGTTCGTGGAGAGAGTGGT
TGGCTTGGAGTTCACTCGCCAGTAGCTGAGAGGAGCGAAACGTCACATGC
GGCCGTGTGTTGGTTTCGTTTGGGGGAGAGTTTGATGGCCGTGTCCACGT
GTTGTCCCGTTCTTTGTGGCGGAGGTCACACCGGTCATCCACCCGGCTCT
CGCCAGTTTTGGTTTTTGGCTTTGTTCTACATATGGAGCGAGTTGTTTCG
TGTTTCTACAGCTACTTTTTCTGCTGCTGCTGTCTCCTTACCTTACGGAC
ACTTGACTTTCCGTGTAATTTCCAGTTAACATTTTTGTACAATAACATGT
AGCATTGATGTACGCGGCATTAGGTTGTGCGAGTGAAATTTGAGGAAGAA
TACATTGATTGCTGTGATTGTGTGACTTCCTCAAGCAGACACTTGAAATA
TAAAAGCAGCAGCTGTGTTGTGAGCCGGAAGCCGTGTGTGTGTGTGTGTG
TTGTGCTTCTTATCTGCTCTGGACGCGAGTCTTCGCCTTTCGAAGTAATA
TGCGAGCGCATCAGCTGAGGTAACACAGGAGGCTTCAGGACTTTCTTTAT
TTTCCTTCTGCTGTGCTTGCCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:71529..77301+

>mRNA_P-littoralis_Contig182.10.1 ID=mRNA_P-littoralis_Contig182.10.1|Name=mRNA_P-littoralis_Contig182.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1011bp|location=Sequence derived from alignment at P-littoralis_Contig182:71529..77301+ (Pylaiella littoralis U1_48)
ATGTTGTTACTGCTGCTGCGTACCTTTGTGCTCGCTCTTATATGGTCCCT
GGGCATATCATGTGCGGTATCTTCTGCGACAACTCAACCGCACACTTGGG
GACCACAGTCGCTCTTGGCCCAAAACGACAACAACGACGGGGGTGACTAT
GGAGCAAGGCGAAGTCACAACGATGGCCGCGTTGATGGCCGCGTCGTAGA
TAGCATTTCACGACAGCAGTCGGTGCTGCTACTGCTGCGACGGGAGGCTT
TGCGTGCTCGTGGTGGCGGCGTTCTTGGTGCTTGGAAGAAGCAGAGGAAC
AAGGGCGTGAACCAGAGGGCATTACCTGCTCCAGAGGCGTTGAGCAGGTA
CCCGAGCTTGAAGACCCCGGGGGGATTGGTGCGACTGTTGGATTACGTCG
GGACTGTCTCCTTCGCGATGAGCGGGGCAGCCACGGCGGGCATGCGAGGG
ATGAACCTCTTGGGGTGCATCTTCGTTGGGGTATTGGCGGCGACGGGAGG
GGGTACCGTGCGAGACCTGCTGCTTGGCCAGACTCCGGTGTTTTGGCTAG
TCGAGGTCGAGTACGTTGTTATCTGCGTAGTGACAGCAATTACTACCTTC
GTGCTTTGGCCGATTCTGTCCCGAGTTTCCGTCCTCTCGCACATGGGTAC
CGGCATGGACGGGTGGCTGTCTCAGGCGATAGACGCGGTCGGGCTGGCGT
CCTTCGCGGTGGCGGGAACGCAGAACGGCATCCGTCGGGGGTGCCACCCG
GGCATCACCGTTGTGATATGCTGCATCACTTGTTCCGGAGGAGGCATCCT
GCGTGATGTTCTGACTTCTTCGCCGGTGATGGCTCTCTCTGAGCACGCCC
AGATGTACGTCAGCACGGCGGCGTTCGGTTCCGCCGCATACCTCTACGCT
CGGAGGTGTGCACAAGACCCGCTCGTGAGAATCTGCGCGGGGTTCTTCAC
CGTGGTAATCTTGCGCTTACTGGCATGTCTATTCGACCTCCGACTCCCCC
GCATGGTGTAA
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