mRNA_P-littoralis_Contig182.89.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.89.1
Unique NamemRNA_P-littoralis_Contig182.89.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:348382..348655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size233
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789877.2641351-CDS-P-littoralis_Contig182:348381..3485801680789877.2641351-CDS-P-littoralis_Contig182:348381..348580Pylaiella littoralis U1_48CDSP-littoralis_Contig182 348382..348580 -
1680789877.2765665-CDS-P-littoralis_Contig182:348621..3486291680789877.2765665-CDS-P-littoralis_Contig182:348621..348629Pylaiella littoralis U1_48CDSP-littoralis_Contig182 348622..348629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789877.2875826-UTR-P-littoralis_Contig182:348629..3486551680789877.2875826-UTR-P-littoralis_Contig182:348629..348655Pylaiella littoralis U1_48UTRP-littoralis_Contig182 348630..348655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.89.1prot_P-littoralis_Contig182.89.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 348382..348629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.89.1

>prot_P-littoralis_Contig182.89.1 ID=prot_P-littoralis_Contig182.89.1|Name=mRNA_P-littoralis_Contig182.89.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MFAATKAEPACTIAITNTAQRARQDISHKIWFHRLGTTHARATKAEPACT
IAITNTAQRAHQPRLTTS*
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mRNA from alignment at P-littoralis_Contig182:348382..348655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.89.1 ID=mRNA_P-littoralis_Contig182.89.1|Name=mRNA_P-littoralis_Contig182.89.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=274bp|location=Sequence derived from alignment at P-littoralis_Contig182:348382..348655- (Pylaiella littoralis U1_48)
ATGGTTTCACCGTCTAGAGACAACACATGTTCGCGCAACTAAAGCCAGAC
CTACTTGTACCATTGCGAGAGACAGCGCAACTAAAGCCGAACCTGCTTGT
ACCATTGCGATCACGAACACTGCCCAACGGGCTCGCCAGGATATATCTCA
CAAAATATGGTTTCACCGTCTAGGGACAACACATGCTCGCGCAACTAAAG
CCGAACCTGCTTGTACCATTGCGATCACGAACACTGCCCAACGGGCTCAC
CAACCAAGATTGACAACATCTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:348382..348655-

>mRNA_P-littoralis_Contig182.89.1 ID=mRNA_P-littoralis_Contig182.89.1|Name=mRNA_P-littoralis_Contig182.89.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig182:348382..348655- (Pylaiella littoralis U1_48)
ATGTTCGCCGCAACTAAAGCCGAACCTGCTTGTACCATTGCGATCACGAA
CACTGCCCAACGGGCTCGCCAGGATATATCTCACAAAATATGGTTTCACC
GTCTAGGGACAACACATGCTCGCGCAACTAAAGCCGAACCTGCTTGTACC
ATTGCGATCACGAACACTGCCCAACGGGCTCACCAACCAAGATTGACAAC
ATCTTAA
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