mRNA_P-littoralis_Contig182.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.17.1
Unique NamemRNA_P-littoralis_Contig182.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig182.17.1 vs. uniprot
Match: D8LLZ5_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ5_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.160e-47
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:  871 RPAVAAATVGSTGPKDLSNAPVEVIDTAERYFEVLKENEDPDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMQMRDLCKSLQ 1158
            RPAVAAATVGSTGPKDLS APVEVI TAERYFEVL+EN   D+IVVIKIYAGFCRACKAFDRKFRLLSLDF+EQGANVKFFEMDWMQ RDLCKSLQ
Sbjct:  109 RPAVAAATVGSTGPKDLSGAPVEVISTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQ 204
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BLAST of mRNA_P-littoralis_Contig182.17.1 vs. uniprot
Match: A0A6H5JEA9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA9_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.020e-44
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:  874 PAVAAATVGSTGPKDLSNAPVEVIDTAERYFEVLKENEDPDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMQMRDLCKSLQ 1158
            PAVAAATVGSTGPKDLS APVEVIDTAERYFEVL+EN   D+IVVIKIYAGFCRACKAFDRKFRLLSLDF+EQGANVKFFEMDWMQ RDLCKSLQ
Sbjct:  383 PAVAAATVGSTGPKDLSGAPVEVIDTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQ 477
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BLAST of mRNA_P-littoralis_Contig182.17.1 vs. uniprot
Match: A0A836C9F2_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.920e-8
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  964 FEVLKENEDPDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMQMRDLCKSLQV 1161
            FE   E    D++V+IK Y  +CRACKAFD K+R L L+ E+Q A   F+E+D   ++D+ + L +
Sbjct:    4 FEAAVEASHGDRLVIIKAYVPWCRACKAFDLKYRRLGLELEQQDAPASFYEIDVFAVKDVKQLLDI 69
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BLAST of mRNA_P-littoralis_Contig182.17.1 vs. uniprot
Match: A0A2V3IJC0_9FLOR (Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC0_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 2.770e-7
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  931 PVEVIDTAERYFEVLKENEDPDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMQMRDLCKSLQV 1161
            PV++I   E+Y +VL+E+ D   +VV+K++A +CR+C+A   K    + +F    +NV+FF+MD+ Q ++LC  L V
Sbjct:   62 PVQLIHGVEQYLQVLRESSD--SLVVLKVFAPWCRSCRALTPKVNRFAREF----SNVRFFKMDYEQNKELCHRLGV 132
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BLAST of mRNA_P-littoralis_Contig182.17.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN)

HSP 1 Score: 52.0 bits (123), Expect = 7.950e-5
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:  943 IDTAERYFEVLKENEDPDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMQMRDLCKSLQV 1161
            ID  E +   ++   D D++V +K YA +CRACK+   +F  L+ +F   G  V+FFE+++   ++LC+ L +
Sbjct:    4 IDGDEAFLAAMQYCTD-DRLVAVKFYASWCRACKSIAPRFERLAKEFA--GDEVQFFEIEFAANKELCRRLNI 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLZ5_ECTSI3.160e-4790.63Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JEA9_9PHAE1.020e-4491.58Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A836C9F2_9STRA1.920e-842.42Thioredoxin domain-containing protein n=1 Tax=Trib... [more]
A0A2V3IJC0_9FLOR2.770e-738.96Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracil... [more]
F0YB20_AURAN7.950e-534.25Thioredoxin domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:85900..89723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLZ5
PFAMsThioredoxin
Model size1656
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.05e-49
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota
Descriptioncell redox homeostasis
Cds size1164
COG categoryCO
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789877.1743884-UTR-P-littoralis_Contig182:85899..859051680789877.1743884-UTR-P-littoralis_Contig182:85899..85905Pylaiella littoralis U1_48UTRP-littoralis_Contig182 85900..85905 +
1680789877.2276192-UTR-P-littoralis_Contig182:89237..897231680789877.2276192-UTR-P-littoralis_Contig182:89237..89723Pylaiella littoralis U1_48UTRP-littoralis_Contig182 89238..89723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789877.1882892-CDS-P-littoralis_Contig182:85905..859231680789877.1882892-CDS-P-littoralis_Contig182:85905..85923Pylaiella littoralis U1_48CDSP-littoralis_Contig182 85906..85923 +
1680789877.2009332-CDS-P-littoralis_Contig182:87328..882431680789877.2009332-CDS-P-littoralis_Contig182:87328..88243Pylaiella littoralis U1_48CDSP-littoralis_Contig182 87329..88243 +
1680789877.2142348-CDS-P-littoralis_Contig182:89006..892371680789877.2142348-CDS-P-littoralis_Contig182:89006..89237Pylaiella littoralis U1_48CDSP-littoralis_Contig182 89007..89237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.17.1prot_P-littoralis_Contig182.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 85906..89237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.17.1

>prot_P-littoralis_Contig182.17.1 ID=prot_P-littoralis_Contig182.17.1|Name=mRNA_P-littoralis_Contig182.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=388bp
MAPSLLQRCLASLLVTQCSLGDNAPPSLPTATALARARAAWSSHRSAAAF
LASPLVTGSSRGSLEQLLMGLRLGDAPASAVLDKPQQQQQLQPRQWQEDA
SAPRPAITTTTATAAAYSSMSSSRPQFTCWSKDQWTPRGALSLSGQQRPH
RQRETRLTWSKGQWSPSQPPVAGFLDSHGTTTTRLRGDGGERARGGWSKS
QWSPREWHAAEWSSSGSSSSLDSTRVAGEGGGIGGGAGVEVSAAGAGGGG
GGGAFTRSSFPPPAIAGAASFGGGRGSTYRAPTAATVSRPAVAAATVGST
GPKDLSNAPVEVIDTAERYFEVLKENEDPDKIVVIKIYAGFCRACKAFDR
KFRLLSLDFEEQGANVKFFEMDWMQMRDLCKSLQVGC*
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mRNA from alignment at P-littoralis_Contig182:85900..89723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.17.1 ID=mRNA_P-littoralis_Contig182.17.1|Name=mRNA_P-littoralis_Contig182.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3824bp|location=Sequence derived from alignment at P-littoralis_Contig182:85900..89723+ (Pylaiella littoralis U1_48)
CGTGGGATGGCTCCTTCTCTTCTGGTGAGTGAGTCTAGGTACAGGTTCTT
CTGACTCGCTCGGCATAGCCCACCAGCCTGTATTGTACCGCTCTGGTGAA
CACAAGTCGAAATCTCTCATTTGTGCACATGTAACTGCTGCTGTGCATCC
GCCCACCTCATGGTGTTGACAAAAACCCACGTCATTATCCATGCACGCCA
TGTACAAGATGCAAACACAGCTTCCTGAGCTTCTTGGCCTACTGCTGTAC
ATTTTCACATGCACGTAAACACCGTGCACTCCTTCCGTTGGCCCATCCTC
TTGGCCTATCTTCTGGCGGCGGCTGCGCCCTCCCCAATCGACCGGTCGTG
TTCATCCATTCGCTATATGTCTCTTTGATACTTGTGAACATTCTCAAGAA
AACAGCCCCTAAAACTCCTTGTGTTTTTACCTTCGTCCTCCTCTCCGATG
ATACCCCGTCTTTCTTGCGTGCCCACATATCCCGAAATATGTACGAGTAG
ACTGGACCAGCATGGATGGGATGGCAACACATAGCACACAGCACACACAG
ATTTTTTTAACTTTGTTTGAGCCTGGCGTGCGTGCAGCAGGCTACTCTCG
CATTTTCACGTTCACAGCAGCAGGTCATGTCATTCGGCTGACCCTGGAAA
GTCGATTGAGGATTGATCGTGCAAGCAGTTGCATTGACTGGGGTTGATTA
GGTTCCATTCGTATACAGCACAGGATTCTACTTCGTGTGATACAGCAGCT
CGTACTGCTGTTGCACTTCGCACTTCTCAAGTGTAAAATATCGGTCTGAT
GTATTTTCTTGTGCTGATCCCGCATATTCTGGACGTCAGTCTTCTCCTTT
CGGTTCGTAAGTGTGGCCCACCAGCAGGGCTCTCATAGGAGAAAGGTCAC
CCTTACAAACACCTCATCATGTTCGCCTCTAAGAAAACAAATAAAACTTC
AATGTGTTCGCTTCCAGACGAGGGTCTAGAGTAGATATTGCAATTAACAC
AAAGAAAAAGATGCATCTACCCCTGTTTCTACAACTACCACCAGTGTTTC
TACAACTCATCAGATATTGTACCGTTGCAGCTCCGTTTGAAAGGTTCTGC
GTCTCTTTCGCCCAGCCGATCAAGAGAGAAATCGCTACTCGTACAGCTCA
CCCACGACGTATTGTATGTACAAGTATGTACATACAAAAGTACGAAGTTT
GTCGCCGCCCCTCGATCTAGACCAAACTCCCCGATACGCGTCACGATGCA
CTGGCTCTATTTGGTCCTCTTTTCGGCGCGATGCTGCTACAGTAATTTTT
CTAATTCTAGGCAACATCAGCACCAACTTTTGCATTTCACCTGTGTTGTC
GGCGCACCGACCACCTTATTTTTTCTCGTCTGTTCCCTCACAATGTGCCG
TTCCTCAAAACAAAACAAAACAAAAACAGCAACGGTGCCTGGCATCGTTG
CTGGTGACGCAGTGCAGCTTGGGCGACAACGCTCCACCGTCGCTGCCGAC
AGCAACAGCTCTTGCAAGAGCAAGAGCAGCATGGTCGTCGCACCGCTCTG
CTGCGGCCTTCTTAGCCTCGCCCCTCGTCACCGGTAGCAGCCGCGGGAGT
CTAGAGCAGCTCCTGATGGGGCTTAGGCTAGGCGATGCCCCAGCAAGTGC
CGTGCTGGATAAACCACAACAGCAACAACAACTGCAACCACGGCAGTGGC
AAGAAGACGCGTCAGCGCCACGCCCGGCCATCACCACCACCACAGCGACC
GCCGCCGCGTACAGCAGCATGAGTAGTAGCAGACCGCAGTTCACCTGCTG
GTCGAAAGACCAGTGGACGCCCCGCGGCGCGCTGTCGTTGTCGGGCCAGC
AGCGGCCGCACCGCCAGCGCGAGACGCGTCTGACCTGGTCCAAGGGCCAG
TGGTCCCCGTCGCAGCCACCAGTGGCGGGATTTTTAGACTCTCACGGCAC
CACCACGACGCGTTTGAGGGGGGACGGGGGAGAACGGGCAAGGGGAGGCT
GGTCCAAGAGTCAGTGGTCGCCGCGCGAATGGCACGCAGCAGAGTGGTCG
AGCTCGGGCTCATCGTCGTCGCTGGACAGCACGAGGGTAGCGGGGGAAGG
CGGCGGAATAGGAGGCGGGGCAGGGGTAGAGGTGTCGGCGGCTGGGGCTG
GCGGCGGCGGCGGCGGCGGAGCGTTTACGAGGAGCTCCTTCCCACCGCCA
GCTATAGCAGGCGCAGCGAGCTTTGGGGGTGGAAGAGGCAGCACGTACAG
AGCGCCAACAGCGGCGACGGTCAGCAGACCAGCGGTCGCCGCGGCAACAG
TGGGCAGCACGGGGCCGAAGGACTTATCCAACGCCCCTGTAGAGGTGCGT
GGTGGCAACGACGACGGCGACGAGAGGAATGGATAAGGGGCTTGGGGGGG
GGGGGGTTGTGTGTAGGAACGTTTGCGTGCATTGTTCGTCAGTACAGTAC
AGCAGTAGACAGGGTTTTTGTGTGATCATTTTGCGTGTGTCATACTGCTG
TGCTGCTGTGTCCAATTAAGACAGGCACGAAAAGGCCGCCATGATCAGTC
AGCGAATAGCGTGAACAGCAGTGTATTTTACCATGTGCCCTTTGCCAAAA
CGAGGATACTCCTGTCTGTATTGCATCGTCGTTCTCTCTCTTGTGTGCGT
AGTACCATATGATATTGCAGCAAGTTCGCCGGGTGCTGTCTCGTTCAATT
GATCCACCCGTCGCCCTACAATGACTGCTTACCCAACAATTATTCTCGCT
TCCGAGGTGGGGGGGGGGGGGGGGGGGCAGAGCTTGAAGCGCGAACCACT
CCCAAGAAAGAGGCTCTCATTTGACCAGCCTGGTGGTTGATGGGTTCGTG
GTGTTTGCGTAAGACACATGCACGGGAAAACGAACTTCCAGAGTACGTGG
AGAAGTGGACCACCTCTCACCACCTCTCGACTCACAGCTCTACCCGCCAC
AAAAACAAACGAACCGACAAACGTCGCAAGCTAACAAGCCTAGAGCCCAC
AACCGCATGTAGAAACAACACGAATAGAACAATTGAACAAACCATCTTTC
CAACCGGTGTGACGACAAGCTTGATAACCCACGACCAAAAAACATGATAA
ACCACAGGTAATTGACACCGCCGAGAGATATTTCGAAGTGCTCAAGGAGA
ACGAAGACCCGGACAAAATCGTGGTCATCAAGATCTACGCCGGGTTCTGC
AGGGCCTGCAAGGCGTTCGACCGCAAGTTCAGGCTCCTGTCGCTGGACTT
CGAGGAGCAGGGGGCGAACGTCAAGTTTTTCGAGATGGATTGGATGCAGA
TGAGAGATCTGTGCAAGTCGTTGCAGGTGGGATGCTGATCGGTGTGGTGT
GGGGTGAGGTGGGGTGAGAGGACGATCCCGAAACGAACGAAAACTTTTCG
TTCTGTGTGGTATTCAAGAAAATAATGCAAAGCGTGTCGATACGCAAGAT
ACACATTGTTTGCATGTAGTTCCCTCTCGTTGTGTGCCAGGTAGACTCAC
TCTGCTTTTACAAATGTATCCACACATTGTACGCAAGAACGCCTTCGTGC
CGTCGCTCTCAAGATTGATCGCACAGCAGTGGCAGGTACTGTATATTTTT
CGCAGAAACACTTATTTCTTGTATGCTTTCTTCTTTCTCCCCCCACCCCT
TCTATATATCTCTGTCCATCTCTCTCTCTCCATCTCTCTCTGTGTGTGTC
TTGGTTGCCCCCTTGTGTATATTTTTCGTTTCTCTGCGTAAGGAAAAGGT
CAAGAAGCTGCCACACCTGGAGCTTTACGTCGGGGACCGCGGGCGGCTTG
AGTCGTTCGTGTGCGGGCCCAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:85900..89723+

>mRNA_P-littoralis_Contig182.17.1 ID=mRNA_P-littoralis_Contig182.17.1|Name=mRNA_P-littoralis_Contig182.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1164bp|location=Sequence derived from alignment at P-littoralis_Contig182:85900..89723+ (Pylaiella littoralis U1_48)
ATGGCTCCTTCTCTTCTGCAACGGTGCCTGGCATCGTTGCTGGTGACGCA
GTGCAGCTTGGGCGACAACGCTCCACCGTCGCTGCCGACAGCAACAGCTC
TTGCAAGAGCAAGAGCAGCATGGTCGTCGCACCGCTCTGCTGCGGCCTTC
TTAGCCTCGCCCCTCGTCACCGGTAGCAGCCGCGGGAGTCTAGAGCAGCT
CCTGATGGGGCTTAGGCTAGGCGATGCCCCAGCAAGTGCCGTGCTGGATA
AACCACAACAGCAACAACAACTGCAACCACGGCAGTGGCAAGAAGACGCG
TCAGCGCCACGCCCGGCCATCACCACCACCACAGCGACCGCCGCCGCGTA
CAGCAGCATGAGTAGTAGCAGACCGCAGTTCACCTGCTGGTCGAAAGACC
AGTGGACGCCCCGCGGCGCGCTGTCGTTGTCGGGCCAGCAGCGGCCGCAC
CGCCAGCGCGAGACGCGTCTGACCTGGTCCAAGGGCCAGTGGTCCCCGTC
GCAGCCACCAGTGGCGGGATTTTTAGACTCTCACGGCACCACCACGACGC
GTTTGAGGGGGGACGGGGGAGAACGGGCAAGGGGAGGCTGGTCCAAGAGT
CAGTGGTCGCCGCGCGAATGGCACGCAGCAGAGTGGTCGAGCTCGGGCTC
ATCGTCGTCGCTGGACAGCACGAGGGTAGCGGGGGAAGGCGGCGGAATAG
GAGGCGGGGCAGGGGTAGAGGTGTCGGCGGCTGGGGCTGGCGGCGGCGGC
GGCGGCGGAGCGTTTACGAGGAGCTCCTTCCCACCGCCAGCTATAGCAGG
CGCAGCGAGCTTTGGGGGTGGAAGAGGCAGCACGTACAGAGCGCCAACAG
CGGCGACGGTCAGCAGACCAGCGGTCGCCGCGGCAACAGTGGGCAGCACG
GGGCCGAAGGACTTATCCAACGCCCCTGTAGAGGTAATTGACACCGCCGA
GAGATATTTCGAAGTGCTCAAGGAGAACGAAGACCCGGACAAAATCGTGG
TCATCAAGATCTACGCCGGGTTCTGCAGGGCCTGCAAGGCGTTCGACCGC
AAGTTCAGGCTCCTGTCGCTGGACTTCGAGGAGCAGGGGGCGAACGTCAA
GTTTTTCGAGATGGATTGGATGCAGATGAGAGATCTGTGCAAGTCGTTGC
AGGTGGGATGCTGA
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