prot_P-littoralis_Contig181.70.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig181.70.2
Unique Nameprot_P-littoralis_Contig181.70.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length309
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig181.70.2 vs. uniprot
Match: D8LF30_ECTSI (C3HC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF30_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 1.440e-90
Identity = 186/332 (56.02%), Postives = 213/332 (64.16%), Query Frame = 0 
Query:    1 MAVEDYLAEFLARLGSLLPAMAATALPEVSLPSSFEEHCPGGPSTLATKTRALLAQYPSHPXXXXXXXXXXAAPLAAAPDVAGSLPVGK-KRRKYGSGGALG---DRRLSAFGDEMVGTAAAIAVFGWRSAHPA----------SSAEGSPSNG---VVSDGGDSAGGAKTTPPHRLSCALCNRRLVTDNFLTLD------VVVPRLGTGAGVEAPRAAGSPEGREGSGRSGKRRRLSGGGTPLKPMDLAVEHRSFCPWAAVHPPSEGEAAVEGAVPGWRQSLKALLSLVNPDRQAS--SELEEAEGFGEAASGKADEALQKVQKVLGVLMR 307
            MAVED LA+FLARL SLLP M A ALPEVSLPS+FE+HCPGG S LA K    + +                       + + +   G  KR++ GSG A G   +R +  FGDEM+GTAAAIA+FGW+SA PA          S  EGS SNG    V+DGG     A    P RLSCALC RRLVTDNFLTL+      V     GTGA  E+P    SPEGR GSGRSGKRRRLSGGGTPLKPMDLAVEHRSFCPWAAVHPP  GE A+EGAVPGWR  L+A+L   NP +Q    S  +E  GF +AA+G+ + ALQKVQKVLGVLMR
Sbjct:  181 MAVEDQLADFLARLDSLLPVMRAAALPEVSLPSTFEQHCPGGLSALAAKAMPSVVE--------------------TREETSENRTAGAHKRQRSGSGKAAGSADNREMLRFGDEMLGTAAAIAMFGWQSA-PATVPVSACAAVSPTEGSSSNGSTVAVADGGAR---ATAKSPARLSCALCKRRLVTDNFLTLEAGPSSGVGCTAAGTGA-EESPGVLSSPEGRGGSGRSGKRRRLSGGGTPLKPMDLAVEHRSFCPWAAVHPPVAGEEAIEGAVPGWRLPLEAVLGWQNPSKQEQVLSTQKERGGFSDAANGEVEGALQKVQKVLGVLMR 487
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig181.70.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF30_ECTSI1.440e-9056.02C3HC-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig181contigP-littoralis_Contig181:418823..421341 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig181.70.2mRNA_P-littoralis_Contig181.70.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig181 415023..423289 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig181.70.2 ID=prot_P-littoralis_Contig181.70.2|Name=mRNA_P-littoralis_Contig181.70.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=309bp
MAVEDYLAEFLARLGSLLPAMAATALPEVSLPSSFEEHCPGGPSTLATKT
RALLAQYPSHPADASDASCASAAPLAAAPDVAGSLPVGKKRRKYGSGGAL
GDRRLSAFGDEMVGTAAAIAVFGWRSAHPASSAEGSPSNGVVSDGGDSAG
GAKTTPPHRLSCALCNRRLVTDNFLTLDVVVPRLGTGAGVEAPRAAGSPE
GREGSGRSGKRRRLSGGGTPLKPMDLAVEHRSFCPWAAVHPPSEGEAAVE
GAVPGWRQSLKALLSLVNPDRQASSELEEAEGFGEAASGKADEALQKVQK
VLGVLMRC*
back to top