mRNA_P-littoralis_Contig181.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig181.62.1
Unique NamemRNA_P-littoralis_Contig181.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 3.210e-72
Identity = 130/273 (47.62%), Postives = 172/273 (63.00%), Query Frame = 1
Query:   10 PTERKDAVEGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLERDAR-----GGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLHLKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            P  R   V  +R  W  Y +P++QDGTFR R+RM   +F  L  M+RP LER+ R      GV P+ E   + A+ FLAGGS+ E M G  +ARSTAYA+VH+ IDAI     L   +P   D L +    +R RS+  VI+ CVGA DGL VR+ +PS R+H  P  FYSGHKK  G+N Q  C+A Y     TMN PGS NDRTA+K   +   +  +P   YIVGDAAY  +++++ PYPGT+L +S+D  N+YQSQ R++IEQ+FGI+V
Sbjct:   39 PQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPV-EFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMV 309          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.920e-69
Identity = 125/273 (45.79%), Postives = 174/273 (63.74%), Query Frame = 1
Query:   10 PTERKDAVEGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLERDA-----RGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLHLKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            P  R + V  +R  +  Y+ P+++D TFR+R+RM   DF  L  ++RP L+RD      R G  P+ E   +  + FLAGGS+ E M    +A+STAYA+VH+ IDAI     L+ K+P   D+ +  A  +R RS+  VI+RCVGA DGL VR+  P  ++HA P  FYSGHKK  G+N Q  C+A+Y     TMN PGS NDRTA+K  G++  ++ +P D +IVGDAAY  + +++ P PGT L  S+D  N+YQSQ R++IEQ+FGILV
Sbjct:   43 PAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPV-EFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYG-DDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILV 313          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.120e-59
Identity = 108/228 (47.37%), Postives = 152/228 (66.67%), Query Frame = 1
Query:  145 VRPSLERDA-----RGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLHLKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            +RP+L+++      R G  P+ +      + +LAGGSI E M G  +ARSTAY +    I+A+ +C  L+ K+P   D  + AA  FR RSS DV+++CVGA DGL VR+ KPS ++ A P  +Y+GHKK  G+N QA CDA Y      MN PGS NDRTA+   G+++ +AG+P  +++VGDAAYG +E+++ P+PGT+L  S+D  NYY SQ RMAIEQ++GILV
Sbjct:   77 LRPALQKNQQMGLLRNGAIPVEDQVAM-TLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAR-AAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 302          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 8.330e-48
Identity = 102/276 (36.96%), Postives = 150/276 (54.35%), Query Frame = 1
Query:   10 PTERKDAVEGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLERD-------ARGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLH-LKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            P  R    E +R DWEE++  + + G FRR YRM    FN L  ++RP LE +        R G  P+       A+  LAG S  +  +   +A+ T + ++ + +DAI +   +    FP T D+    A  + A+S+  V   CV A DGL V+   PS         ++SG+K   GLN+QATCDANY F  M+  + G+TND TAW      + +A +P  YY++GDAAY  ++ ++TPYPG  L +  D  N++ SQ R+ IEQ++GILV
Sbjct:   58 PKARLPIHEPRRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAV-ALRMLAGASYLDVAVLFGIAKETVFHVLWEVVDAINNTPEVGAFFFPQTRDDCARQAKEWEAKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPYPGKLLPRDEDSFNFHLSQLRVKIEQAYGILV 332          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 3.010e-47
Identity = 102/268 (38.06%), Postives = 152/268 (56.72%), Query Frame = 1
Query:   34 EGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLERD-------ARGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLH-LKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            E +R DW+E++  L +   FRR YRM    F+ L  ++RP LER+        R G  P+ +H  + A+  LAG S  +  +   +A+ T + ++ + +DAI +   +    FP T +E    A  + A+S+   I  CV A DGL V+   PS         ++SG+K   GLN+QATCDANY F  M+  + G+TND TAW        +A +P  YY++GDAAY  +++++TPYPG  L + +D  N+Y SQ R+ IEQ+FGILV
Sbjct:   68 EPRRLDWDEHVRDLRRRKVFRRTYRMEEGCFDKLADLLRPILERNDFYARKRTRHGAVPV-KHRLAVALRILAGASYMDVAVLFGIAKETVFHVLWEVVDAINNTPEVGPFFFPQTVEECARQAKEWEAKSTGGAISGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSELSRAVARLPPGYYMLGDAAYPLSDQLLTPYPGKLLPRDQDAYNFYLSQLRVKIEQAFGILV 334          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 5.680e-46
Identity = 100/276 (36.23%), Postives = 150/276 (54.35%), Query Frame = 1
Query:   10 PTERKDAVEGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLERD-------ARGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLH-LKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            P  R+   E +R DWEE+++ + +   FRR YRM    F+ L  ++RP LER+          G  P+       A+   AG S  +  +   +A+ + + ++ Q +DAI +  ++    FP T +E    A  +  +S+      CV A DGL V+   P+         F+SGHK   GLN+QATCDANY F  M+    GSTND TAW      + +A +P  +Y++GDAAY  +++++TPYPG  L + +D  N+Y SQ R+ IEQ+FGILV
Sbjct:   57 PKARQPIHEPRRLDWEEHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSARLRTSSGAVPVKIRLAV-ALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAREWEVKSTGGAFAGCVAAGDGLFVKTFAPTVVNTPNVLSFFSGHKNGYGLNIQATCDANYRFCSMSAIAAGSTNDWTAWNRSELSDSVARLPPGFYMLGDAAYPLSDQLLTPYPGKLLPRDQDAFNFYLSQLRVKIEQAFGILV 331          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.350e-43
Identity = 95/251 (37.85%), Postives = 150/251 (59.76%), Query Frame = 1
Query:    1 VTLPTERKDA--VEGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLERDA-----RGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLHLKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTN 732
            +  PT+R  +  V  +R  +E YI+P+LQD TF  R+RM  +DF  L   +RP+L+++      R G  P+ E+  +  + +LAGGSI E M G  +ARSTAY +    I+A+ +C  L+ K+P   D  +  ++   A +  DV+++CVGA DGL VR+ KPS ++ A P  +Y+GHKK  G+N Q                  S NDRTA+   G+++ +AG+P  +++VG+AAYG +E+++ P+PGT+
Sbjct:   38 LDAPTKRNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPV-EYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATA-ALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQVC----------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTS 270          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.360e-43
Identity = 71/135 (52.59%), Postives = 99/135 (73.33%), Query Frame = 1
Query:  409 DVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            DV+++CVGA DGL VR+ KPS ++ A P  +Y+GHK   G+N QA CDA Y     TM+ PGS NDRTA+    +++ +AG+P  +++VGDAAYG +E+++ P+PGT+L  S+D  NYY SQ RMAIEQ++GILV
Sbjct:   16 DVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 150          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5JV75_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV75_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.360e-41
Identity = 99/269 (36.80%), Postives = 142/269 (52.79%), Query Frame = 1
Query:   34 EGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLE--------RDARGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLH-LKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            E +R  WE++   L +    RR YRM    FN L G++ P L+        R  RG V+     A    +  +AG S  +A M   V++ TA++++ Q +DAI S   +    FP + DE    A  +  +S+    +  V A DGL V+   P+         +YSG K   G+N+QATCDANY F  M+   PGSTND TAW        +  +P  +Y++GDAAY  ++ ++TPYPG  L   +D  N+Y SQ R+ IEQ+FGILV
Sbjct:   71 EPRRLVWEDHAADLKKRKLLRRMYRMEEPVFNKLAGLLEPILQLYDYYARKRYRRGAVSTKIRLAIG--LRMMAGASYIDAAMLFGVSKETAFSILWQVVDAINSTAEVGPFFFPQSEDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVKTLAPTALNTPNVLSYYSGSKCGYGVNVQATCDANYRFCSMSCIAPGSTNDWTAWNHSDLSTAVKNLPPGFYMLGDAAYPLSDHLLTPYPGRGLPLDKDAFNFYLSQLRVRIEQAFGILV 337          
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.050e-37
Identity = 97/277 (35.02%), Postives = 143/277 (51.62%), Query Frame = 1
Query:    1 VTLPTERKDA--VEGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVRPSLERDARGGV----APMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVHQGIDAIVSCTSLHLKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRDVTNYYQSQGRMAIEQSFGILV 813
            +  PT+R  +  V  +R  +E +I+PLLQD TF  R+RM  +DF  L   +RP+L ++ + G+    A   E+  +  + +LAGGSI E M G  +ARSTAY +    I+A+ +C  L+ K+P                +  DV+++CVGA DGL VR+ KPS ++ A P  +Y+GH+K V                                                +VGDAAYG +E+++ P+PGT+L  S+D  N Y SQ RMAIEQ++GILV
Sbjct:   38 LDAPTKRNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWP---------------EARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGV------------------------------------------------VVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIEQTYGILV 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig181.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE3.210e-7247.62DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE1.920e-6945.79DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.120e-5947.37DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JHK3_9PHAE8.330e-4836.96DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUE6_9PHAE3.010e-4738.06DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JDE6_9PHAE5.680e-4636.23DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE1.350e-4337.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNF2_9PHAE2.360e-4352.59DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JV75_9PHAE2.360e-4136.80DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE1.050e-3735.02DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig181contigP-littoralis_Contig181:371367..372811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI46469
PFAMsDDE_Tnp_4
Model size813
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1e-39
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size813
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789876.2558446-CDS-P-littoralis_Contig181:371366..3716391680789876.2558446-CDS-P-littoralis_Contig181:371366..371639Pylaiella littoralis U1_48CDSP-littoralis_Contig181 371367..371639 -
1680789876.2672873-CDS-P-littoralis_Contig181:372260..3725891680789876.2672873-CDS-P-littoralis_Contig181:372260..372589Pylaiella littoralis U1_48CDSP-littoralis_Contig181 372261..372589 -
1680789876.2756996-CDS-P-littoralis_Contig181:372600..3728111680789876.2756996-CDS-P-littoralis_Contig181:372600..372811Pylaiella littoralis U1_48CDSP-littoralis_Contig181 372601..372811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig181.62.1prot_P-littoralis_Contig181.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig181 371367..372811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig181.62.1

>prot_P-littoralis_Contig181.62.1 ID=prot_P-littoralis_Contig181.62.1|Name=mRNA_P-littoralis_Contig181.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=271bp
VTLPTERKDAVEGKRNDWEEYIEPLLQDGTFRRRYRMSMEDFNDLYGMVR
PSLERDARGGVAPMAEHAGSGAVHFLAGGSIDEAMMGPNVARSTAYAMVH
QGIDAIVSCTSLHLKFPTTTDELQEAAYGFRARSSEDVIKRCVGAADGLL
VRIRKPSKRQHACPERFYSGHKKTVGLNLQATCDANYVFTGMTMNTPGST
NDRTAWKSGGWEEKIAGIPGDYYIVGDAAYGPTEKMITPYPGTNLDQSRD
VTNYYQSQGRMAIEQSFGILV
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mRNA from alignment at P-littoralis_Contig181:371367..372811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig181.62.1 ID=mRNA_P-littoralis_Contig181.62.1|Name=mRNA_P-littoralis_Contig181.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1445bp|location=Sequence derived from alignment at P-littoralis_Contig181:371367..372811- (Pylaiella littoralis U1_48)
GTAACCCTCCCCACCGAAAGGAAGGACGCGGTGGAGGGGAAGCGCAACGA TTGGGAGGAGTACATAGAGCCTTTGCTGCAAGACGGTACTTTCCGCCGGC GATACCGCATGTCGATGGAAGACTTCAATGATCTGTACGGCATGGTCCGT CCGAGCTTGGAGAGAGATGCGCGTGGTGGTGTGGCTCCAATGGCGGAGCA CGCGGGGAGTGGTCTTTGGCAGGGGCGGTTCATTTTCTAGCGGGCGGTTC GATCGACGAGGCGATGATGGGGCCAAACGTCGCCAGGTCCACAGCATACG CCATGGTACACCAGGGTATTGACGCCATCGTTTCGTGCACGAGTCTTCAT CTCAAATTCCCAACAACCACGGATGAGCTGCAGGAAGCAGCTTATGGATT TCGAGCTCGCAGCTCCGAGGACGTCATCAAGAGATGCGTGGGTGCGGCTG ATGGCCTGCTAGTGCGCATTAGGAAGCCGAGCAAGAGACAGCATGCCTGT CCAGAAAGGTTCTATTCGGGGCACAAGAAGACGGTCGGGTTGAACTTGCA GGTGATCCGATTTGTTTTTTGGCTCCCTCGCTACCTACAGCAGTACACCG TGTAGTCTATACGGAGTACTTCGAGGAACAACGATTGCAACGTGTGGGGC GCGCAGGGCTGCCGGCGTTGTTGGATGCTCGGGTTGCCTGCAGTTGATAT GCTCCCTCTCTCTCAGGGCACAGACGTTGGGTGTGGTCCCTCGCCGCTGT TCAAGTGTACGGGGTGCTGTCTTGTATGCGTTCGACCGGCACGCTGTGCT CTCTTTCTTACTCTCTGTGTATGCCAAAATATAGGTATGTAGCTCTTCAT CTTTTCTGATCTTCATTCGTCTGCGCGTGCTTGCGTACGTAGCAGGAATG AGTGTCGCCGCCGCTTCTGTGTGTTGTGGCTTTTGCTGTGGCAGGCACTC GTGTGTGTAAGCTTCTGATGTCTTTGTACTGGACACTGGATGTATCTTCG CGTCATTTATCTCTGTCTTCTCTTTCGCAAACAGGCTGTTGTTGCCTGCA TATTCACACCGGCCGGTGCCCCGGCGGCTGAAGCAAGGAAGGAAGTCGAC ACGCCCCACTAAAGCTTTCCAATTCGCCGTGTGATTGTTTTTCCCTGCTG TTTCTGTCACATCGTGTTGCAGGCAACGTGCGATGCGAACTATGTTTTCA CTGGGATGACCATGAATACACCTGGCAGCACGAACGACCGCACGGCGTGG AAAAGCGGGGGGTGGGAAGAGAAGATCGCTGGGATCCCGGGTGACTACTA CATCGTGGGAGACGCGGCTTATGGTCCGACGGAAAAGATGATAACCCCGT ACCCAGGCACCAACCTGGACCAGAGCCGAGACGTCACCAACTACTACCAG TCCCAGGGGCGCATGGCGATAGAGCAATCGTTTGGGATCCTGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig181:371367..372811-

>mRNA_P-littoralis_Contig181.62.1 ID=mRNA_P-littoralis_Contig181.62.1|Name=mRNA_P-littoralis_Contig181.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig181:371367..372811- (Pylaiella littoralis U1_48)
GTAACCCTCCCCACCGAAAGGAAGGACGCGGTGGAGGGGAAGCGCAACGA
TTGGGAGGAGTACATAGAGCCTTTGCTGCAAGACGGTACTTTCCGCCGGC
GATACCGCATGTCGATGGAAGACTTCAATGATCTGTACGGCATGGTCCGT
CCGAGCTTGGAGAGAGATGCGCGTGGTGGTGTGGCTCCAATGGCGGAGCA
CGCGGGGAGTGGGGCGGTTCATTTTCTAGCGGGCGGTTCGATCGACGAGG
CGATGATGGGGCCAAACGTCGCCAGGTCCACAGCATACGCCATGGTACAC
CAGGGTATTGACGCCATCGTTTCGTGCACGAGTCTTCATCTCAAATTCCC
AACAACCACGGATGAGCTGCAGGAAGCAGCTTATGGATTTCGAGCTCGCA
GCTCCGAGGACGTCATCAAGAGATGCGTGGGTGCGGCTGATGGCCTGCTA
GTGCGCATTAGGAAGCCGAGCAAGAGACAGCATGCCTGTCCAGAAAGGTT
CTATTCGGGGCACAAGAAGACGGTCGGGTTGAACTTGCAGGCAACGTGCG
ATGCGAACTATGTTTTCACTGGGATGACCATGAATACACCTGGCAGCACG
AACGACCGCACGGCGTGGAAAAGCGGGGGGTGGGAAGAGAAGATCGCTGG
GATCCCGGGTGACTACTACATCGTGGGAGACGCGGCTTATGGTCCGACGG
AAAAGATGATAACCCCGTACCCAGGCACCAACCTGGACCAGAGCCGAGAC
GTCACCAACTACTACCAGTCCCAGGGGCGCATGGCGATAGAGCAATCGTT
TGGGATCCTGGTA
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