mRNA_P-littoralis_Contig181.16.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig181.16.2
Unique NamemRNA_P-littoralis_Contig181.16.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig181.16.2 vs. uniprot
Match: D7G3R6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R6_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 6.620e-88
Identity = 160/287 (55.75%), Postives = 190/287 (66.20%), Query Frame = 1 
Query:  199 NATQLLLGTRTSTDGSVSPKPRWAKGSPPTKDETVVTADKAAQQECTTPITSSSSTADEEGPSSLPPLRSESGSDATSSNNGENGRKAYAMAWRWLVEDEATSEPKLQRPTTDIPVELPHLDDAERELLCRHTELRLREVGRQSADISALVDEYLRFMFLRNRLENMLSLDPSLLVDDVWQAHITSGSEYDAFCERTFDGQPLEFGMPHRNIDPSQPVLYGNTVGAYEHFFGVCPPAESWPAPQVVE----PALDG-----EEGIDTSGRRRALVRSSEEKFHFTKD 1032
            N T+LLL + TSTDG +SPKPRW +G+P T+ +T    DK  +           +++++     LP      G  + +S +    RK Y MAWRWL+EDEA SEP+LQRPT   P  LP L DAER+LLCR+ ELRL EVGR S DI ALV+EYLRFMFLR RLE ML+LDPS LVD VWQAHITS  EY AFCERTF G+ LE G+PHR +D SQP+LY NTVGAYEHFFG   P E WPAP VV      ALDG     E  +D SGRR A VR+ E K HF ++
Sbjct:   70 NTTKLLLESHTSTDGHISPKPRWTRGNPNTEPDTGADGDKLDESSXXXXXXXXXASSEDGREEPLPTSLRPGGRSSNASGSSCGDRKWY-MAWRWLLEDEAASEPRLQRPTEADPAVLPKLMDAERQLLCRNVELRLLEVGRHSTDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVDVVWQAHITSDREYAAFCERTFGGEGLECGVPHREVDASQPMLYENTVGAYEHFFGAVAPFECWPAPAVVVGGACTALDGKGEEEEAPVDVSGRRTAFVRTEERKVHFAEE 355
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig181.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3R6_ECTSI6.620e-8855.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig181contigP-littoralis_Contig181:134690..139451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog340.xcc-b100_0533
Model size2040
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.11e-05
EggNOG OGsCOG4278@1|root,COG4278@2|Bacteria,1RI3P@1224|Proteobacteria,1SZRD@1236|Gammaproteobacteria,1X9FR@135614|Xanthomonadales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_000100.1
Descriptionphenylacetate-CoA ligase activity
Cds size876
COG categoryH
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig181.16.2prot_P-littoralis_Contig181.16.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig181 135671..139268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789874.291119-UTR-P-littoralis_Contig181:134689..1356701680789874.291119-UTR-P-littoralis_Contig181:134689..135670Pylaiella littoralis U1_48UTRP-littoralis_Contig181 134690..135670 -
1680789874.3493137-UTR-P-littoralis_Contig181:139268..1394511680789874.3493137-UTR-P-littoralis_Contig181:139268..139451Pylaiella littoralis U1_48UTRP-littoralis_Contig181 139269..139451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789874.3059883-CDS-P-littoralis_Contig181:135670..1359681680789874.3059883-CDS-P-littoralis_Contig181:135670..135968Pylaiella littoralis U1_48CDSP-littoralis_Contig181 135671..135968 -
1680789874.3140726-CDS-P-littoralis_Contig181:136478..1366241680789874.3140726-CDS-P-littoralis_Contig181:136478..136624Pylaiella littoralis U1_48CDSP-littoralis_Contig181 136479..136624 -
1680789874.3270447-CDS-P-littoralis_Contig181:136751..1371331680789874.3270447-CDS-P-littoralis_Contig181:136751..137133Pylaiella littoralis U1_48CDSP-littoralis_Contig181 136752..137133 -
1680789874.3356967-CDS-P-littoralis_Contig181:139218..1392681680789874.3356967-CDS-P-littoralis_Contig181:139218..139268Pylaiella littoralis U1_48CDSP-littoralis_Contig181 139219..139268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig181.16.2

>prot_P-littoralis_Contig181.16.2 ID=prot_P-littoralis_Contig181.16.2|Name=mRNA_P-littoralis_Contig181.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=292bp
MDAPINATQLLLGTRTSTDGSVSPKPRWAKGSPPTKDETVVTADKAAQQE
CTTPITSSSSTADEEGPSSLPPLRSESGSDATSSNNGENGRKAYAMAWRW
LVEDEATSEPKLQRPTTDIPVELPHLDDAERELLCRHTELRLREVGRQSA
DISALVDEYLRFMFLRNRLENMLSLDPSLLVDDVWQAHITSGSEYDAFCE
RTFDGQPLEFGMPHRNIDPSQPVLYGNTVGAYEHFFGVCPPAESWPAPQV
VEPALDGEEGIDTSGRRRALVRSSEEKFHFTKDSSASSKSQ*
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mRNA from alignment at P-littoralis_Contig181:134690..139451-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig181.16.2 ID=mRNA_P-littoralis_Contig181.16.2|Name=mRNA_P-littoralis_Contig181.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4762bp|location=Sequence derived from alignment at P-littoralis_Contig181:134690..139451- (Pylaiella littoralis U1_48)
GTGATGTTCTTCACAGGTTCTTAGGTTCGTTCCGCGATACAATACAGAAT
ATGGGATGACAACACACAGCTCAAATTCCACGTGTCGTTGACACCACTCG
CGCCTAGTCTCAAACCGCTCTCCTCTCTCTCTGCCACTCTAACTAGTCAA
CAGGAAAGACAATAATACTGCATCGTCGGAACTATGGACGCGCCGATCAA
CGCGACCCAGCTCCTGCTAGGAACCCGGACCAGGTTAGCCTCTTACAGGT
TTCAGTTGTACACACCCTAGTTGCGCAATCTTGCGGGTGGTATCGTAGCC
GTAAATATATACACAGCAGTACCGCCCACTGCTGTGCTGTTCTGTGTTTC
TGTGTTGGACTGACTGCGTGAGCCTAATTGCACAGCGGTACCGCCTACTG
CTGTGCTGTTCTGTCTTGAACGGTGTGAAGGGCTCTTGGCTCACGCGCGT
GTTCCGCCCCGGTGTACTCTGCGGGCTTCCGGAGCTACCCGCCTCGTTTC
ACTGATTCATCTCCACACTGTTGAACATCATAATACTTGTATGATATGTA
ACTGCTACTGCTGTTAGGCTTGTTCAACGTTACACAGCGGCTCAACCCTG
CGATGGGACACAAGCCTTACGAATGGGATTTCTAGAGTTGCGCCTCTTAT
CCAGGTGCTGCGGGATAGAAGCACGCCACGCATCGATGGATGGCACAAAC
TGCTACAATATACTCAAAATAGTACATGACGGCGGACAATTCGCGTCCAG
TGCTGGTGTAATAATAAGGTCGATCGAAAGCACGAAAGTGCGGCAAAAAT
GATCAGGGCCATGATGTGAATATGTACCACCACAGCAGTATCATGACATC
CAGAATACGAGTATGATACACGAAGTAAAGATCATGTACTAGACTAAATA
TACATACATACCTGGTATGTAGGAGGCACAAGTACAACCATAAAAACAGC
AGTTCGCGCAACTTTTTAGGCTTCCTTCTACGTACTATCATGTGCAGCTG
GTACTACGCGGAATCGGAAATGGGATGGTAATGAGCGACGGGTGGGTGCT
GCTGACGGCATGGGATAGTACTTGGGTCTTGGCTGATGGGACGGGATGGG
ATGGAATCGGGTGCTATCCTGTGGGTGGATGGGATGGATGGTTCTTTGAA
GTAGTTTTACTTATGGATGGTAGGTGATGGGGATGATCAACCGCATCGCG
ATAATGGATAATGGTTAATTTTTTTAATGATGGGAAAGCTTTTTTTTGTG
GAGCTTCGCTGGGGATTTTGTGCGTTTTTTCGACACAAAAACACCAAACA
CGTGAAAAAGTGTACTTGGAAGAAATTGCGCGCACAGCAGTTCGTGCCAT
TTTTAGGAAATTCTCCGGAGTACGAAGTATATTACTTCGAAAAGTACTTC
GAAGTGCTGATGTGTTGATGCCTACCAGGTACTACCGTAGTTGTTGTTTT
TGTGTTGTTGTTGTCTTCACTAAAAACCATTCCGATCTCTCCTCTGTACC
TTCTAATGTCCGTACTCCACCGATCAGGTACGATTTCCGTGGTCACAGGC
TGCTTGCCCCAGAAGGGGTATATAGTTCTCGGGAGATCCCCTCGGTCCAC
CAAATAAAGGCACGACAAGGAGTCTCCGGCAAAAACAAAAACGGACCCCG
AGAAATCACACAACGCTGTACAAAAATTGAACAAGATACAAGAAACGAGA
AAAGGGAGCCTGGTCCAGAGCCAAGTTACAAAATTAAATCAAAAGAAATC
AAAAGTCAAAAATAAAATAAAAAGTCACAGAGGAGTGACAAAAAGACAAA
AAGACAACGAATTCAGTTGTCAAGGTGTCGATAAAATGGACACCGGGCGT
GCTACTGTTTTCACCGGCCCAGTAACAGTTTCAGGCAGCGCAAGTACGCA
GGCGTGAAGGGGGCAAAAATGTAGAAGGGTAGACAAAAACAGAGAACACA
AACAGAAACCTTCGAAGGACGTTGTAGCTCAGTCCACGGTAACTCAACAA
ACAGGGGGGGGCGCACTGATGCAGTGGGGAAACGGATGAGAAGGGTTAGT
GCTATCACAGCAGTGTCAGTAGTACACGTGGTTTTTTCTAACTTGCATAT
TTTTCATTAAAATTCCATGGTGGCGAAGCAGTGTGGTGAAACACATTTAC
CACACCGCGCTATAAAAAAACAAATTCGGGTCGGCCATGGACTTATGATT
TTTTCTTCCGGTACCAACGGTTTTCCCTTCCCTCTCGTTTTCGCTGTCCC
ATTTTACACTATTTTTGCCATTCTTTTCTTAATGCCGCTTCGACACCAAA
ATACCTGTGCTCCTGTAGCACCGACGGCAGTGTCTCCCCCAAGCCCCGAT
GGGCGAAGGGTTCCCCTCCGACGAAAGACGAAACAGTCGTGACCGCCGAC
AAGGCGGCACAACAAGAATGCACAACGCCGATCACATCCTCATCATCTAC
CGCTGACGAAGAAGGGCCATCCTCACTGCCGCCGCTTCGATCGGAATCGG
GATCGGACGCTACCAGCAGCAACAACGGCGAAAACGGCAGGAAAGCGTAT
GCCATGGCTTGGAGGTGGCTGGTCGAAGACGAGGCCACCAGCGAGCCCAA
GCTTCAGAGGCCCACGACTGACATCCCTGTCGAGTTGCCGCACTTGGATG
ACGCCGAGCGAGAACTGCTGTGCCGACACACAGAGCTGAGATTACGCGAA
GTGAGTTCGAGTGATTCGACTCTAACGGAGTGCACATCACACGGAACTTT
ATCTGTGCGTCGACTCGAGTGTGAGTGCGAGGTTGTAACCTAACCTAACT
ATGTCCCACGCTTCCCTGCTGACGTAGGTTGGTCGCCAATCGGCTGATAT
CTCAGCGCTGGTGGATGAGTATCTACGCTTCATGTTCCTTCGCAACCGCC
TGGAGAACATGCTGTCCCTGGACCCTTCCCTTCTAGTGGATGATGTGTGG
CAGGCTCACATTACATCCGGCAGGTGAGATACAGTACCGAATAAACAAAG
AAAACTCGTTGCACGTGCGATACGCTAGAGCTCTTCAGAAAGAGCGGGTA
CATACAGTCTCATGCTTCTTGGTCCTTTGAAAACCATATGTGCGCCCACC
CCAAATGTTTGACCCCATTTTTTTCCTCATGGCTTTTATCCGACGTAGAG
CAGTAGATAGAGGAGACCCCCCCTCCACCCCCTTTATCCCCCTTCCTCCA
TTTCTCTATCACCGAAAATGCTAGAACTACGTGGTCCCCGCCCTGCCTCA
CCGTCGGAAGGTGAGGGCATATTCTTGTACCCTCTCGTAGTTTTCGTATC
TCTCCAGCGTTCTTGAGATCAAAAGCACGTCAAAATCGGCTTTTACAGAA
CAGATGTAGACGGCGAGCCGTGTTGCAGCGGCTTCCTCGTCCAAGTGACA
CAACCAAGAGTGCTCCAACCCCGGTCATCCCTCTCTTCCCCACGTGCACC
CCGGTTACGACCGAAACTATCACTTCGAAGCAGCGAGTACGACGCATTCT
GCGAGCGCACGTTCGACGGACAACCATTGGAATTCGGAATGCCGCACAGG
AACATCGACCCCTCGCAACCCGTCTTGTACGGGAACACCGTGGGTGCATA
CGAGCACTTTTTCGGCGTTTGTCCCCCCGCCGAGTCGTGGCCGGCACCAC
AAGTTGTTGAGCCTGCTCTGGACGGGGAGGAAGGAATAGACACCTCAGGG
CGGCGGAGGGCTTTGGTACGCTCCTCCGAAGAAAAGTTCCATTTCACCAA
AGACAGCTCAGCTTCAAGTAAATCACAGTAAACGTATGGGAGTTTACCTC
TCGCAAGAACGGCGAGCTCCACAATATTATTGAGATAGACTTTGCTTAAA
CTTTTGTGGGCGAACTTTCGTGCTGTTGTTGTTCGGGTGGACGTATGCCT
TTGTCATCTCCGACGGGCTTTTGTGTTGTTTTTGGTTATTTAGACCTTTG
TCGTAAGAAGACTTTTCGTTGTTGATTTTTCGGGCGTGTGTTTGCACCAT
CAGTGTGTGTGTGTCGTTCATGCTCGCAAGCGTGCTTCCTTTCCCGGGCC
GGCATGTCCGATCCCGAAAGTATGTGTCGGACGGTTCGATACTTGGAGTA
TTACAGTAACATGTGCGTGTTGTGCGTGGTATATGTATATTTTAGACTTT
GTATTTTGTAGATGTTCATATTTTCGGTTTGTAGGGCGCTCTGCCGCTAT
GCACCTTCCTACCGCTATGCCTTGTCTGAATGTAAATAGCGAGAAGGGCC
CGACCATTCCTTTCCCTTTGTGAAGTTTTTCGTTTTTCGAACTGACTCCT
GTGTACTTACGAAATGTCCGCCTTACATATTCACGTTAGTCACCAAGTAT
TCTGCTGTGTCAGCGAGTGTCAAGTTGCGAAGCAACAAGACAGGATCCAA
AAAACGCCCATCCGTTGTACTGGCCCTGTTTTAAGTGTAGAATGCTGAGT
CTGCGCGCGATAACCTTCTTTCCTTTTACTCTTTTGAGTGTGTTGTGTGG
CTTAATTAAACATTCACGTTGGCGCGTGCGTTATCCCTGAATTGTGTGTT
TATTTGCGTCGTTTTTGTGGTGGTATCATTTGCCGAGGTGCGCTTTTTCG
CGTCATGCTGTTTGGACCTGACTTAAACGGGTTGAGTATTCGATCTATGC
GTTTTCAAGCTCTCCATGAGAGCATTCGAACGACGGTAAGAATAATAAAA
TACCTGGTATCACCGTAGCTATCTTCGAGGCGGTCGATACCGTCAGTGAC
GTGAGTTTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig181:134690..139451-

>mRNA_P-littoralis_Contig181.16.2 ID=mRNA_P-littoralis_Contig181.16.2|Name=mRNA_P-littoralis_Contig181.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=876bp|location=Sequence derived from alignment at P-littoralis_Contig181:134690..139451- (Pylaiella littoralis U1_48)
ATGGACGCGCCGATCAACGCGACCCAGCTCCTGCTAGGAACCCGGACCAG
CACCGACGGCAGTGTCTCCCCCAAGCCCCGATGGGCGAAGGGTTCCCCTC
CGACGAAAGACGAAACAGTCGTGACCGCCGACAAGGCGGCACAACAAGAA
TGCACAACGCCGATCACATCCTCATCATCTACCGCTGACGAAGAAGGGCC
ATCCTCACTGCCGCCGCTTCGATCGGAATCGGGATCGGACGCTACCAGCA
GCAACAACGGCGAAAACGGCAGGAAAGCGTATGCCATGGCTTGGAGGTGG
CTGGTCGAAGACGAGGCCACCAGCGAGCCCAAGCTTCAGAGGCCCACGAC
TGACATCCCTGTCGAGTTGCCGCACTTGGATGACGCCGAGCGAGAACTGC
TGTGCCGACACACAGAGCTGAGATTACGCGAAGTTGGTCGCCAATCGGCT
GATATCTCAGCGCTGGTGGATGAGTATCTACGCTTCATGTTCCTTCGCAA
CCGCCTGGAGAACATGCTGTCCCTGGACCCTTCCCTTCTAGTGGATGATG
TGTGGCAGGCTCACATTACATCCGGCAGCGAGTACGACGCATTCTGCGAG
CGCACGTTCGACGGACAACCATTGGAATTCGGAATGCCGCACAGGAACAT
CGACCCCTCGCAACCCGTCTTGTACGGGAACACCGTGGGTGCATACGAGC
ACTTTTTCGGCGTTTGTCCCCCCGCCGAGTCGTGGCCGGCACCACAAGTT
GTTGAGCCTGCTCTGGACGGGGAGGAAGGAATAGACACCTCAGGGCGGCG
GAGGGCTTTGGTACGCTCCTCCGAAGAAAAGTTCCATTTCACCAAAGACA
GCTCAGCTTCAAGTAAATCACAGTAA
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