mRNA_P-littoralis_Contig181.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig181.8.1
Unique NamemRNA_P-littoralis_Contig181.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig181.8.1 vs. uniprot
Match: A0A6H5KBC4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.330e-17
Identity = 71/194 (36.60%), Postives = 98/194 (50.52%), Query Frame = 1 
Query:   10 GLQHCLGKT--KTPSVQQKKSAVVKRATEHTVGETHHVGQST-----TAVLSPEQFTRGRELRMSE--------LIGDEPALDR--RTVGWYHSCATSCVFSDNKIWLDISWLALLSAEYKVNIMVWEPSGKNETVQPRSSSNIKGSFLYDKKEIIDEPGEYWLHLLFRLEANPWAGPCRCGGGEEGTSDTQPF 540
            GLQ  LG+T  + P +    S  VK A +H++  +H +G S      T +LS EQ  R R L+ +E        L   EPA D+   T GW  S     + ++   WLD+ WL+L+   Y+VNI VWEP+G+ + VQ     N+ G FL+DKK   DE G  W+HLL+R   + W      GG E   S    F
Sbjct:  111 GLQASLGQTNMRVPRM----SDGVKSALKHSI-ISHILGPSASQAVMTTLLSTEQTRRARALQCTETFRMHPYELNTPEPA-DKGVMTYGWLDSIVQEKLRAE---WLDLCWLSLIPEMYRVNIAVWEPTGRGQLVQ-LYKKNMWGLFLFDKKIKHDEEGHKWVHLLYR-SGSSWEARTEVGGDENTVSRHNHF 293
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BLAST of mRNA_P-littoralis_Contig181.8.1 vs. uniprot
Match: A0A6H5JLZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.690e-8
Identity = 26/68 (38.24%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:  220 TVGWYHSCATSCVFSDNKIWLDISWLALLSAEYKVNIMVWEPSGKNETVQPRSSSNIKGSFLYDKKEI 423
            TV W++  A    +   + W+D++W++ L+++Y+VNIMV EPS K+ TVQ  S +N  G FL++++ +
Sbjct:   35 TVRWFYDLA----WQSAEKWVDVTWMSFLASQYRVNIMVLEPSAKHGTVQAYSGNNTAGMFLFEEEGV 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig181.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBC4_9PHAE7.330e-1736.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLZ0_9PHAE9.690e-838.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig181contigP-littoralis_Contig181:26448..27020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size573
Hectar predicted targeting categoryother localisation
Exons1
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789874.042431-CDS-P-littoralis_Contig181:26447..270201680789874.042431-CDS-P-littoralis_Contig181:26447..27020Pylaiella littoralis U1_48CDSP-littoralis_Contig181 26448..27020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig181.8.1prot_P-littoralis_Contig181.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig181 26448..27020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig181.8.1

>prot_P-littoralis_Contig181.8.1 ID=prot_P-littoralis_Contig181.8.1|Name=mRNA_P-littoralis_Contig181.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
MHDGLQHCLGKTKTPSVQQKKSAVVKRATEHTVGETHHVGQSTTAVLSPE
QFTRGRELRMSELIGDEPALDRRTVGWYHSCATSCVFSDNKIWLDISWLA
LLSAEYKVNIMVWEPSGKNETVQPRSSSNIKGSFLYDKKEIIDEPGEYWL
HLLFRLEANPWAGPCRCGGGEEGTSDTQPFRLAAAWARGF*
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mRNA from alignment at P-littoralis_Contig181:26448..27020-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig181.8.1 ID=mRNA_P-littoralis_Contig181.8.1|Name=mRNA_P-littoralis_Contig181.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig181:26448..27020- (Pylaiella littoralis U1_48)
ATGCATGATGGCCTACAGCACTGCCTGGGTAAGACCAAGACACCAAGCGT
ACAGCAGAAGAAGAGTGCAGTAGTCAAGAGAGCGACTGAGCACACTGTTG
GTGAAACACATCATGTGGGGCAGTCAACGACAGCAGTACTCTCGCCAGAG
CAATTTACGAGAGGCCGCGAACTCCGCATGTCGGAATTGATAGGTGACGA
GCCTGCCTTAGACAGGAGAACGGTCGGCTGGTATCATTCATGCGCAACAT
CTTGTGTTTTTAGCGACAACAAGATATGGCTCGACATCAGCTGGCTTGCT
CTTCTCTCAGCAGAGTACAAGGTGAACATCATGGTCTGGGAGCCAAGTGG
TAAAAACGAGACTGTTCAGCCCCGCTCATCATCGAACATCAAAGGCTCAT
TTTTGTACGACAAAAAGGAGATAATCGACGAGCCGGGGGAATACTGGCTA
CATTTACTGTTTCGCCTGGAAGCGAACCCATGGGCGGGCCCGTGCCGATG
TGGCGGAGGGGAGGAGGGGACATCGGACACACAACCATTTCGATTGGCTG
CAGCTTGGGCCCGAGGCTTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig181:26448..27020-

>mRNA_P-littoralis_Contig181.8.1 ID=mRNA_P-littoralis_Contig181.8.1|Name=mRNA_P-littoralis_Contig181.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig181:26448..27020- (Pylaiella littoralis U1_48)
ATGCATGATGGCCTACAGCACTGCCTGGGTAAGACCAAGACACCAAGCGT
ACAGCAGAAGAAGAGTGCAGTAGTCAAGAGAGCGACTGAGCACACTGTTG
GTGAAACACATCATGTGGGGCAGTCAACGACAGCAGTACTCTCGCCAGAG
CAATTTACGAGAGGCCGCGAACTCCGCATGTCGGAATTGATAGGTGACGA
GCCTGCCTTAGACAGGAGAACGGTCGGCTGGTATCATTCATGCGCAACAT
CTTGTGTTTTTAGCGACAACAAGATATGGCTCGACATCAGCTGGCTTGCT
CTTCTCTCAGCAGAGTACAAGGTGAACATCATGGTCTGGGAGCCAAGTGG
TAAAAACGAGACTGTTCAGCCCCGCTCATCATCGAACATCAAAGGCTCAT
TTTTGTACGACAAAAAGGAGATAATCGACGAGCCGGGGGAATACTGGCTA
CATTTACTGTTTCGCCTGGAAGCGAACCCATGGGCGGGCCCGTGCCGATG
TGGCGGAGGGGAGGAGGGGACATCGGACACACAACCATTTCGATTGGCTG
CAGCTTGGGCCCGAGGCTTCTGA
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