mRNA_P-littoralis_Contig181.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig181.47.1
Unique NamemRNA_P-littoralis_Contig181.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig181.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig181contigP-littoralis_Contig181:248222..248756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size352
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789873.8394012-UTR-P-littoralis_Contig181:248221..2482541680789873.8394012-UTR-P-littoralis_Contig181:248221..248254Pylaiella littoralis U1_48UTRP-littoralis_Contig181 248222..248254 -
1680789873.8651447-UTR-P-littoralis_Contig181:248728..2487561680789873.8651447-UTR-P-littoralis_Contig181:248728..248756Pylaiella littoralis U1_48UTRP-littoralis_Contig181 248729..248756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789873.8479602-CDS-P-littoralis_Contig181:248254..2484021680789873.8479602-CDS-P-littoralis_Contig181:248254..248402Pylaiella littoralis U1_48CDSP-littoralis_Contig181 248255..248402 -
1680789873.856328-CDS-P-littoralis_Contig181:248585..2487281680789873.856328-CDS-P-littoralis_Contig181:248585..248728Pylaiella littoralis U1_48CDSP-littoralis_Contig181 248586..248728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig181.47.1prot_P-littoralis_Contig181.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig181 248255..248728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig181.47.1

>prot_P-littoralis_Contig181.47.1 ID=prot_P-littoralis_Contig181.47.1|Name=mRNA_P-littoralis_Contig181.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MGVGGCLVHMRTPLLDRTLWHGACFGLWSPSLTHGRGVMALPATSISRAL
RNEIHCRLPRWTRGQVTVATCNVDRRNDTLQETSISCKGPKIRNGE*
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mRNA from alignment at P-littoralis_Contig181:248222..248756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig181.47.1 ID=mRNA_P-littoralis_Contig181.47.1|Name=mRNA_P-littoralis_Contig181.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=535bp|location=Sequence derived from alignment at P-littoralis_Contig181:248222..248756- (Pylaiella littoralis U1_48)
CTACCCCATTGTGGGTGTATTTTGGCGTATGGGTGTGGGTGGCTGTCTTG
TACATATGCGAACCCCCCTTTTGGACCGCACCCTCTGGCATGGTGCATGC
TTTGGCCTCTGGTCGCCTTCTTTGACACATGGTCGGGGCGTGATGGCCCT
TCCCGCCACCTCGATCAGCAGCTTGAATGAGTTGTTGGGCATCAAAGATC
AGCTGACGAGCGGCCAAGTCGCTCTTATCAAACAGCACCTCCTCAACAAG
AAGCCCATGCCTTTGTTTTTTTTCTCGTGCTTGTGTGTGTTTGTTTGGGT
CGTCGTGAGGACGAAGGATTGCAGTCTTGATTCTAACAAAGGCCAAACAA
ATGCAGCTTTACGCAATGAAATCCACTGCAGGTTGCCTCGTTGGACACGA
GGACAGGTGACGGTTGCAACGTGCAACGTAGACAGGAGAAACGATACATT
ACAAGAAACAAGCATATCCTGCAAGGGCCCAAAAATAAGAAACGGCGAAT
AGGAAAATCAGCGCCATATGCTGGGAGTATGGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig181:248222..248756-

>mRNA_P-littoralis_Contig181.47.1 ID=mRNA_P-littoralis_Contig181.47.1|Name=mRNA_P-littoralis_Contig181.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig181:248222..248756- (Pylaiella littoralis U1_48)
ATGGGTGTGGGTGGCTGTCTTGTACATATGCGAACCCCCCTTTTGGACCG
CACCCTCTGGCATGGTGCATGCTTTGGCCTCTGGTCGCCTTCTTTGACAC
ATGGTCGGGGCGTGATGGCCCTTCCCGCCACCTCGATCAGCAGAGCTTTA
CGCAATGAAATCCACTGCAGGTTGCCTCGTTGGACACGAGGACAGGTGAC
GGTTGCAACGTGCAACGTAGACAGGAGAAACGATACATTACAAGAAACAA
GCATATCCTGCAAGGGCCCAAAAATAAGAAACGGCGAATAG
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