mRNA_P-littoralis_Contig180.98.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.98.1
Unique NamemRNA_P-littoralis_Contig180.98.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: D7G2Q4_ECTSI (Fatty acid hydroxylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q4_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 1.270e-144
Identity = 239/311 (76.85%), Postives = 259/311 (83.28%), Query Frame = 3
Query:  138 MLWGPVAAAAAADGFWTDVLLKGAGGA-AFSLVNA-DTWRWWHYPAWLSVILLGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYPRDD------RESGADGKPPADGARVDGTAAALQKEKAG 1046
            M W P       DG   DVL+KGAGG  AFSLVNA DTW+WWHYPAWLSVILLGLE VAA+VHV+G+AS+ ATIRPRGKHLD+F  LDRLFV FNRCSTAVFTYHA+QYLWY PWGGR+ W + ELGLA+G+ A VA YVVYD  XXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHP EFL GEYNHLLALHLVSR+VVPVHVV+AGAFIVAGGF ASLNHTRFD+RIP+LYEVRYHDIHHWYPECNYGQYTM WDW+MGSLK YP ++      R  G    PPA+GAR D TAA   KEKAG
Sbjct:    1 MSWFPTLPLL--DGLLADVLVKGAGGGVAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGVSELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWVMGSLKAYPAEEDRGERKRNLGGGVTPPANGARSDSTAAE-NKEKAG 308          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A4D9CVT2_9STRA (Fatty acid hydroxylase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVT2_9STRA)

HSP 1 Score: 262 bits (670), Expect = 2.020e-80
Identity = 127/258 (49.22%), Postives = 166/258 (64.34%), Query Frame = 3
Query:  189 DVLLKGAGGAAFSLVNADTWRWWHYPAWLSVILLGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIP----YLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYP 950
            D+ L+GAGG AF L NA TW   H+ AW  ++L GLEI+A LV  +G+  R  +I  RGKHLD  +  D  F+ FN+ +T +F+YH +++LW      ++ W + E+   N   A   L+VVYD                        RQKAP+RGN DAVNVHP EF+ GEYNHL A++LVSRF++PVH + A AFIV GGFLASLNHTRFD++ P     +Y+VR+HD+HHW+PE NYGQY M WD++ GS KPYP
Sbjct:   19 DLFLRGAGGGAFLLWNAHTWLSHHFIAWGLLVLAGLEILACLVFAFGRLRRVPSIPMRGKHLDTLDTRDLGFIAFNKLATTLFSYHLLRFLWLSKGPAQVAWRVEEMTWQNTCLALPLLFVVYDFAYTLFHRALHHRALYKHIHKHHHRQKAPSRGNTDAVNVHPVEFVAGEYNHLAAIYLVSRFLLPVHALTALAFIVLGGFLASLNHTRFDIQTPGVLSSVYQVRFHDVHHWFPESNYGQYLMLWDYVFGSFKPYP 276          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A7S1U5D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5D6_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.960e-64
Identity = 113/246 (45.93%), Postives = 147/246 (59.76%), Query Frame = 3
Query:  210 GGAAFSLVNADTWRWWHYPAWLSVILLGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPY 947
            G AA  L+ A+TW W     +  V+L GLE+V+  V      +    I+  GKH DK    D+ F+ FN+ +  VFT+H + Y+W  P   ++ W L +    N   A   LYVVYD                         QKAP+RGN DAVNVHPFEF+CGEYNH+LAL +++ F+  VHV+AAG FI+AGG LASLNHTR+DV IP +Y+V+YHD+HH  P+ NYGQY M WD LMGS + Y
Sbjct:    8 GAAAVELMEAETWSWPVRIGYTVVVLGGLELVSRFVLTAFSGAEKIPIK--GKHHDKLTTKDKCFIAFNKATVVVFTWHMLSYIWQNP---KVVWALEDATALNTAAAAALLYVVYDFFYTLFHRFLHVKAIYGYVHKHHHIQKAPSRGNVDAVNVHPFEFVCGEYNHILALFILTTFM-EVHVLAAGLFILAGGALASLNHTRYDVSIPGIYDVKYHDVHHRIPQSNYGQYIMLWDHLMGSFREY 247          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A835Z0N4_9STRA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N4_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.330e-63
Identity = 131/298 (43.96%), Postives = 165/298 (55.37%), Query Frame = 3
Query:  189 DVLLKGAGGAAFSLVNADTWRWWHYPAWLSVILLGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNA----DAVNVHPFEFLCGEYNHLLAL----------------------------------------HLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYP 950
            ++LL+  G AAF L     W  WH   W+ V+L GLE+++ L    G+AS    I  RGKHLD+ E  D  F+ FN+  T +FTY  ++ +W  P G R+ W L +   AN V A +ALYVV+D              XXXXXXXXXX              DAVNV+PFEFL GEYNHLLA+                                         LVSRFVVPVHV AA  F++AGGF+ASLNHTR+DVR+  +Y+VRYHD+HHWYP+CN+GQYTM WD   GS + +P
Sbjct:    8 ELLLRLGGAAAFVLQGERQWEPWHIALWIVVLLAGLELLSVLTFALGRASGAKLIPHRGKHLDRLEATDVAFIAFNKLCTTLFTYQWLRVMWEQPLGMRMVWALGDADAANTVGATLALYVVFDLFYTLFHRALHHRSXXXXXXXXXXXXXXXXXXXXXXXXDAVNVYPFEFLSGEYNHLLAILRPIFXXXXXXXXXXXGGDDXXXXXXXXXXXXXXXXXXXXFLVSRFVVPVHVAAAAVFVIAGGFMASLNHTRYDVRVGSVYQVRYHDMHHWYPDCNFGQYTMLWDRAFGSFRHFP 305          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A7S2TQE1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQE1_9EUKA)

HSP 1 Score: 217 bits (553), Expect = 2.600e-63
Identity = 120/241 (49.79%), Postives = 156/241 (64.73%), Query Frame = 3
Query:  228 LVNADTWRWWHYPAWLSVILLGLEIVAALV-HVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPY 947
            L +A TW WWH+  +  VI LGLE++  LV + +  A++   I  RGKHLD+FE +D  F+ FN+ +  VFTYH I++ +       I W + +LG+ NG  + VA+++VYD          X  XXXXXXX    RQ+APTRGN DA+NVHPFEF+ GEY HL+A  LVSR V+ +HV A   F+  GG LASLNHTR+D+    +Y V+ HD+HH  PE NYGQY M WD LMGS KPY
Sbjct:   30 LHDASTWEWWHFAGFALVIYLGLELLNVLVINAFSSANQ---IPIRGKHLDEFEFIDNAFIQFNKLAIIVFTYHMIRFTFTAK---NICWDIRDLGILNGPSSLVAMHIVYDFFYTLFHRFLXNRXXXXXXXKHHHRQRAPTRGNLDAINVHPFEFVVGEYIHLVAAFLVSR-VMTIHVGAIAWFVAVGGLLASLNHTRYDLSFLGVYSVKVHDVHHRLPESNYGQYIMLWDKLMGSYKPY 263          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A7S0GVS8_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GVS8_9EUKA)

HSP 1 Score: 214 bits (545), Expect = 3.270e-62
Identity = 108/248 (43.55%), Postives = 149/248 (60.08%), Query Frame = 3
Query:  222 FSLVNADTWRWWHYPAWLSVILLGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYPRDDRE 965
            F +    TW+ WH+  +  VI LG+EI++ +V +  Q ++T  I  RGKHLD FE +D +++  N+ +TAVF YH ++Y+        + W +  L + N   + V +++VYD                        RQ+APTRGN DA+NVHPFEF+ GEY HLLA HLV++++V VH+VA   F+V GG LASLNHTRFD     +Y V+ HD+HH  PE NYGQY M WD +MGS KPY    +E
Sbjct:   25 FVIHQPGTWQVWHFGVFSVVIYLGMEILSHIVPLVFQ-NKTNLIPMRGKHLDVFETVDHVYININKIATAVFVYHMLKYVN----AANVEWDIGGLSVVNFPVSVVLMHIVYDFFYTIFHRVLHNRQLYRFVHKHHHRQRAPTRGNLDAINVHPFEFVVGEYLHLLAAHLVTKYLVKVHIVAIAWFVVVGGILASLNHTRFDFSFLGIYSVKVHDVHHRLPESNYGQYIMLWDKIMGSYKPYVEPKKE 267          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A7S4IH56_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH56_9EUKA)

HSP 1 Score: 211 bits (537), Expect = 3.530e-61
Identity = 104/247 (42.11%), Postives = 146/247 (59.11%), Query Frame = 3
Query:  210 GGAAFSLVNADTWRWWHYPAWLSVILLGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYP 950
            G  AF +  +  W W+   AW+  I+  LEI++ +V +       + I  +GK LD+   +D  ++ FNR  T VFT+  IQ+ WY     ++ W L  LG+ N + A VA+++VYD                        RQ  PTRGN DA+NVHP EF+ GEYNHLL ++LVSR V+ +HV++   F++ G  LASLNHTRFD+++  L++V+YHDIHHWYP  N+GQYTM WD + G  K YP
Sbjct:   11 GAVAFIMFESQYWEWYQICAWVVGIIAALEILSRVVMI--AQPFFSVIPAKGKPLDELATIDLCYIWFNRLCTPVFTFQVIQFCWYS---SQVVWALDSLGILNTLGAMVAMFIVYDFFYAIYHRSLHIRGIYKYIHKHHHRQTVPTRGNVDAINVHPVEFVMGEYNHLLVMYLVSR-VIEIHVLSVLLFLLIGATLASLNHTRFDIQVSKLFQVKYHDIHHWYPYANFGQYTMLWDHVFGWFKDYP 251          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A061SG51_9CHLO (C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SG51_9CHLO)

HSP 1 Score: 209 bits (531), Expect = 7.140e-60
Identity = 109/244 (44.67%), Postives = 143/244 (58.61%), Query Frame = 3
Query:  249 RWWHYPAWLSVILLGLEIVAALVHVYGQA-------SRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVR---IPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYP 950
             WW Y  +   ++L +E+++A V   G           T  I  RG+HLD  E  D +F+ FNR +T VFT+HA+Q+LW  P   R+ W   +   A+ + A  A++VVYD                        RQ AP+RGN DAVNVHPFEFL GEYNHL A+  VSR  VPVH  AA  FIV+GG LASLNHTR D+    +P+L++V+YHD+HHW P  N+GQYTM WD++  S + YP
Sbjct:   32 EWWMYALFGLAVVLAMELLSASVPRIGSVILTLQGRRNTGLIPARGRHLDALEATDYVFIAFNRLTTPVFTFHAMQFLWQSP---RVVWGARDATAASVLLALAAMFVVYDSTYCLFHRALHHRSVYKHVHKHHHRQMAPSRGNVDAVNVHPFEFLPGEYNHLFAIWAVSR-AVPVHAGAALLFIVSGGVLASLNHTRLDIASPVLPWLFKVKYHDVHHWDPSVNFGQYTMIWDYVFRSFRAYP 271          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: A0A7S0W795_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W795_9CRYP)

HSP 1 Score: 207 bits (528), Expect = 1.110e-59
Identity = 116/247 (46.96%), Postives = 149/247 (60.32%), Query Frame = 3
Query:  216 AAFSLVNADTWRWWHYPAWLSVILLGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYPRD 956
            AAF   +A TW    Y +W +VI+LGLEIVA LV    +   T  +  RG HLD     D  F+ +N+  TAVFTYHA+++ WY      + W L EL L N V A   L+VVYD                  XXXXXX Q AP+RG ADAVNVHPFEF+CGEY HLLA+     F+VP H++ A  F+V GG +ASLNHTRF+V +  +++V++HD HH  P  NYGQY M WD++ G+   YP +
Sbjct:   27 AAFKFWDASTWTPLQYLSWCTVIVLGLEIVAWLVSNIPKLFNTVILPKRGSHLDVLTSKDIAFICWNKFCTAVFTYHALRFCWYSK---TVKWGLDELTLLNTVVALGGLFVVYDFFYHIFHRALHLRSVYKYXXXXXXNQHAPSRGTADAVNVHPFEFVCGEYCHLLAI-----FLVPCHIMTAALFVVGGGVVASLNHTRFNVSLLNVFDVKFHDQHHVVPTVNYGQYIMLWDYVFGTYHEYPHE 265          
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Match: L1JK92_GUITC (Fatty acid hydroxylase domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JK92_GUITC)

HSP 1 Score: 200 bits (509), Expect = 2.300e-57
Identity = 105/235 (44.68%), Postives = 137/235 (58.30%), Query Frame = 3
Query:  261 YPAWLSVILLGLEIVAALVHVYGQASRTATIRP-RGKHLDKFELLDRLFVTFNRCSTAVFTYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDXXXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPECNYGQYTMFWDWLMGSLKPYPRDDR 962
            Y  W  VILLGLE+++ LV+   Q     +  P RGKHLD     D  F+T+N+ +T +FTYHA+++ W  P   RI W   E+ + N V AF +L+VVYD                         Q AP+RGNADAVNVHP EF+ GEY HLLA+     F++P H V A  F+V GG LASLNHTR+D+ +P L++ + HD HH  P  NYGQYTM WD + G+  P+P   R
Sbjct:    4 YALWSVVILLGLELMSYLVNEIPQRFFNPSAIPIRGKHLDVLSWKDISFITWNKFTTTLFTYHALRFCWLSP---RIAWGWSEMTILNTVIAFFSLFVVYDFFYCIWHRILHVRGLYKFIHKHHHHQAAPSRGNADAVNVHPIEFIVGEYCHLLAI-----FIIPCHAVVAAVFVVLGGILASLNHTRYDIAVPLLFDTKAHDQHHVIPTVNYGQYTMLWDRVFGTYVPHPLSSR 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q4_ECTSI1.270e-14476.85Fatty acid hydroxylase domain-containing protein n... [more]
A0A4D9CVT2_9STRA2.020e-8049.22Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S1U5D6_9STRA2.960e-6445.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835Z0N4_9STRA1.330e-6343.96Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S2TQE1_9EUKA2.600e-6349.79Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0GVS8_9EUKA3.270e-6243.55Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A7S4IH56_9EUKA3.530e-6142.11Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A061SG51_9CHLO7.140e-6044.67C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL0... [more]
A0A7S0W795_9CRYP1.110e-5946.96Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
L1JK92_GUITC2.300e-5744.68Fatty acid hydroxylase domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:356933..359077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2Q4
PFAMsFA_hydroxylase
Model size1611
Max annot lvl2759|Eukaryota
KEGG rclassRC00904
KEGG koko:K00227
KEGG ReactionR07215,R07486,R07491,R07505
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101,M00102
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.85e-148
EggNOG OGsCOG3000@1|root,KOG0872@2759|Eukaryota
Ec32 ortholog descriptionFatty acid hydroxylase
Ec32 orthologEc-11_003100.1
EC1.14.19.20
DescriptionC-5 sterol desaturase activity
Cds size912
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789872.9710832-UTR-P-littoralis_Contig180:356932..3574941680789872.9710832-UTR-P-littoralis_Contig180:356932..357494Pylaiella littoralis U1_48UTRP-littoralis_Contig180 356933..357494 -
1680789873.0055692-UTR-P-littoralis_Contig180:358940..3590771680789873.0055692-UTR-P-littoralis_Contig180:358940..359077Pylaiella littoralis U1_48UTRP-littoralis_Contig180 358941..359077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789872.9828217-CDS-P-littoralis_Contig180:357494..3576921680789872.9828217-CDS-P-littoralis_Contig180:357494..357692Pylaiella littoralis U1_48CDSP-littoralis_Contig180 357495..357692 -
1680789872.996049-CDS-P-littoralis_Contig180:358226..3589401680789872.996049-CDS-P-littoralis_Contig180:358226..358940Pylaiella littoralis U1_48CDSP-littoralis_Contig180 358227..358940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.98.1prot_P-littoralis_Contig180.98.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 357495..358940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.98.1

>prot_P-littoralis_Contig180.98.1 ID=prot_P-littoralis_Contig180.98.1|Name=mRNA_P-littoralis_Contig180.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=304bp
MLWGPVAAAAAADGFWTDVLLKGAGGAAFSLVNADTWRWWHYPAWLSVIL
LGLEIVAALVHVYGQASRTATIRPRGKHLDKFELLDRLFVTFNRCSTAVF
TYHAIQYLWYGPWGGRIGWPLPELGLANGVCAFVALYVVYDLFYTVFHRV
LHLRGLYKHVHKHHHRQKAPTRGNADAVNVHPFEFLCGEYNHLLALHLVS
RFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPYLYEVRYHDIHHWYPE
CNYGQYTMFWDWLMGSLKPYPRDDRESGADGKPPADGARVDGTAAALQKE
KAG*
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mRNA from alignment at P-littoralis_Contig180:356933..359077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.98.1 ID=mRNA_P-littoralis_Contig180.98.1|Name=mRNA_P-littoralis_Contig180.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2145bp|location=Sequence derived from alignment at P-littoralis_Contig180:356933..359077- (Pylaiella littoralis U1_48)
TGACTCGGCGTCGTCTTGGCAGACGGAACTGTTCTCAGCAGTGATTCCGG TGCTGGACACGTGAACAACCAACGTACGGCGTTTTGACATCACCTTGTCT TTGGTGACACCGTGAGAGGTCGTGAATAGAAAACCAAATGCTGTGGGGTC CAGTTGCAGCAGCAGCTGCAGCAGATGGGTTTTGGACCGATGTTCTGCTG AAGGGGGCAGGCGGAGCAGCGTTCTCCCTCGTCAACGCGGATACCTGGCG ATGGTGGCACTACCCGGCCTGGTTGTCTGTCATCTTGCTGGGCCTAGAGA TCGTTGCAGCCCTGGTCCACGTCTACGGTCAGGCGTCTAGAACCGCCACC ATCCGCCCTCGCGGGAAGCACCTCGACAAGTTTGAACTGTTAGACAGGTT GTTCGTCACGTTCAACCGCTGCAGCACGGCGGTCTTCACATACCACGCTA TCCAGTACCTCTGGTATGGCCCCTGGGGCGGCCGGATCGGCTGGCCCCTC CCAGAGCTAGGGCTAGCGAATGGAGTGTGCGCTTTTGTGGCGCTTTATGT CGTGTATGACCTCTTCTACACGGTGTTTCACAGAGTGTTGCACCTCCGAG GCCTGTACAAGCACGTGCACAAGCACCACCATCGGCAGAAGGCTCCGACG CGAGGCAACGCCGACGCCGTCAACGTGCACCCGTTTGAGTTCCTCTGCGG AGAGTACAATCACCTCTTGGCGCTGCACCTGGTGTCGAGGTTCGTGGTGC CGGTGCACGTGGTGGCCGCGGGTGCTTTTATTGTGGCGGGAGGGTTCTTG GCCTCGCTGAACCACACCCGGTTTGATGTCCGAATTCCGTACTTGTACGA GGTGAGTTGTTCAGCTGGTGTTTTTTTGTTTTTAGCAATGATTCCGGCCG GTGTGTTTGGTCAACACAGCGTCGCTCTCTCGTGTTACGGACGGCCCATT TATATGCGATTGCCTCACTTTGTAGTTAATGCAATCCGTCGTCGTTCTCT GGTAACCGACGATACGTTGTTTCCTTCAACTCTTGGACGTGTCAGAAAAT CAAACGACCATGCACCGAAGAAGACATCAGCCGCAAAAGGGGGGCAATCC AGGAGTGCCGAGCGGCGGCGCTTTCTCTCGCCCCTCGGCTCATGTTCGAG AGATGGTTGTTGCTCCGCGTTCCTTCGAAGGTCCAGCCTGCTCCTATCGG CTTGTGACCCATAGCGGTAGAAAGGGATGCATCACCCCGCTCACACGAGG ATTGTTTTTGAGCTTCATACTGCTGTATATTACGTGGAGATATTCTGTCG CCAGCGACATCGTCTTTTATCTCCCGACACCCCCCCCCCCCGACCCGTTG ACATCGAACGTTGGTTTTACCCGCGTGCGATTCAGGTGCGATACCATGAC ATTCACCACTGGTATCCTGAGTGCAACTACGGGCAGTACACGATGTTTTG GGACTGGTTGATGGGAAGTTTGAAGCCGTATCCTCGAGACGACAGAGAGA GCGGTGCCGACGGAAAACCTCCAGCGGATGGCGCGCGAGTTGATGGCACC GCAGCTGCCTTACAGAAGGAGAAGGCGGGTTGAGTAAAAAAGTAGCGACA TTCTAAGAGGGGGCAGTGGCGTCAGAGGCACCTGAGAAAGCGAGGCTGTC TCTCGAAAAGTTGCATCTCTGTACCACTCCGTTCACGTTCGTCAGGCCGC TGCTGCTGGGTGTTTTTACGTATGTGTAGTTTGGCGTACAGGGTTTCCTG CACGACAGCGGTGCGAAGGTTTTAGGCTTTTTGAAGGTTTGATTCCATCT TCGTTGTTTCATTTCATAATTACCATCCTGCCGTCCACAGGTGGTGGGTG GTGTGTAAACTGTATCCATGTATGTATCTTGTGCAAAGTCGGCTCCCTTC AGGAACACCTGTGCCCTTTGTGTACCAGGAGTAACGCTGATGTCGATATT CTTGTATTTGCTCTAGTTGTAGAGATGACTACGGTGGTGCCGACGCTCTC ATCATTTCGAAAAAACAAAACAAAACAGACAAAGCTCCCCGTCCGAGAGC CGGCATCGTAAGAGACTGCTGCATGCAGTAGTAATGGATTTTTGTTAACA AAACCCCACCCACCAGTGGCCCAAACCGAATGGAGCAGTTTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig180:356933..359077-

>mRNA_P-littoralis_Contig180.98.1 ID=mRNA_P-littoralis_Contig180.98.1|Name=mRNA_P-littoralis_Contig180.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=912bp|location=Sequence derived from alignment at P-littoralis_Contig180:356933..359077- (Pylaiella littoralis U1_48)
ATGCTGTGGGGTCCAGTTGCAGCAGCAGCTGCAGCAGATGGGTTTTGGAC
CGATGTTCTGCTGAAGGGGGCAGGCGGAGCAGCGTTCTCCCTCGTCAACG
CGGATACCTGGCGATGGTGGCACTACCCGGCCTGGTTGTCTGTCATCTTG
CTGGGCCTAGAGATCGTTGCAGCCCTGGTCCACGTCTACGGTCAGGCGTC
TAGAACCGCCACCATCCGCCCTCGCGGGAAGCACCTCGACAAGTTTGAAC
TGTTAGACAGGTTGTTCGTCACGTTCAACCGCTGCAGCACGGCGGTCTTC
ACATACCACGCTATCCAGTACCTCTGGTATGGCCCCTGGGGCGGCCGGAT
CGGCTGGCCCCTCCCAGAGCTAGGGCTAGCGAATGGAGTGTGCGCTTTTG
TGGCGCTTTATGTCGTGTATGACCTCTTCTACACGGTGTTTCACAGAGTG
TTGCACCTCCGAGGCCTGTACAAGCACGTGCACAAGCACCACCATCGGCA
GAAGGCTCCGACGCGAGGCAACGCCGACGCCGTCAACGTGCACCCGTTTG
AGTTCCTCTGCGGAGAGTACAATCACCTCTTGGCGCTGCACCTGGTGTCG
AGGTTCGTGGTGCCGGTGCACGTGGTGGCCGCGGGTGCTTTTATTGTGGC
GGGAGGGTTCTTGGCCTCGCTGAACCACACCCGGTTTGATGTCCGAATTC
CGTACTTGTACGAGGTGCGATACCATGACATTCACCACTGGTATCCTGAG
TGCAACTACGGGCAGTACACGATGTTTTGGGACTGGTTGATGGGAAGTTT
GAAGCCGTATCCTCGAGACGACAGAGAGAGCGGTGCCGACGGAAAACCTC
CAGCGGATGGCGCGCGAGTTGATGGCACCGCAGCTGCCTTACAGAAGGAG
AAGGCGGGTTGA
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