mRNA_P-littoralis_Contig180.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.86.1
Unique NamemRNA_P-littoralis_Contig180.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: D7G2Q9_ECTSI (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q9_ECTSI)

HSP 1 Score: 430 bits (1105), Expect = 3.320e-144
Identity = 223/266 (83.83%), Postives = 231/266 (86.84%), Query Frame = 2 
Query:  305 MAGDPDETKGVTVDLAEYKGGAVTVRVPLIEITDAQAXXXXXXXXXXXXHGGALQKSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKVDGRPVPGSKKENFELEFKEGHEEPWATFTAKMAVGMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDEVRAELRAKGELVVKSRTDKAVDEGVKKFLLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIASVEGIEPREVMELLRNEAEVIYLEK 1102
            MAGD DETKGVTVDLAEYKGGAVTVRVPLIEIT+AQ                ALQKSKKPYKLIPVRFVEEGGT+MGHTVIMNWDAKVDGRPVPG+KKENFELEFKEGH EPWATF  KMAVGMGQMETKVFPATFPEDFEIEGLRGK ALVQAVVKNIARKE KEPE R+DDEVRA LR KGE  VK+RTDKAVDE VKKFLL SC VNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIA  EGIEPR V+E LR+EAEVI +EK
Sbjct:    1 MAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQVE-------------AALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDEAEVILMEK 253
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A7S0VQZ5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQZ5_9CRYP)

HSP 1 Score: 160 bits (406), Expect = 1.880e-40
Identity = 100/268 (37.31%), Postives = 149/268 (55.60%), Query Frame = 2 
Query:  305 MAGDPDETKGVTVDLAEYKGGAVTVRVPLIEITDAQAXXXXXXXXXXXXHGGALQKSKKPYKLIPVRFVE-EGGTQMGHTVIMNWD--AKVDGRPVPGSKKENFELEFKEGHEEPWATFTAKMAVGMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDEVRAELRAKGELVVKSRTDKAVDEGVKKFLLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIASVEGIEP-REVMELLRNEAEVIYL 1096
            M G     K   V L +Y G +VT+  P  E+++A                  L+++ K Y+L   RF + EGG +MGHTV++N+   +   G  + G+K   +ELE KEG +EPW+TF + +AVGMGQ E K F  TFP D+ +  L+GK    +  VK I +K AK+P+ R ++  RA+  A+ E  ++    + VD+ ++  L+ +C  +  K   AVSWAKFGE+STLD +W  IKE I   EGI+    V E LR+   V ++
Sbjct:   67 MQGGSGGDKNAEVTLGQYTGLSVTL--PRAEVSEAAVAKI-------------LKENAKDYRLESARFTDGEGGARMGHTVLINFVGYSPETGAELKGTKANMYELELKEGQKEPWSTFASNIAVGMGQDEMKSFVVTFPGDYAVPALQGKQVRFETYVKKIMKKVAKDPDTRQEEVQRADAVAQLEAAIERNNLEKVDQALRLELMKTCAADTTKATEAVSWAKFGERSTLDLQWQIIKEAIGREEGIKDIGAVEEFLRDSNTVNWV 319
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A4D9CVA6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVA6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.720e-39
Identity = 102/267 (38.20%), Postives = 144/267 (53.93%), Query Frame = 2 
Query:  341 VDLAEYKGGAVTVRVPLIEITDAQAXXXXXXXXXXXXHGGALQKSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKV------------DGRPVPGSKKENFELEFKEGHEEPWATFTAKMAVGMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDEVRAELRAKGELVVKSRTDKAV-DEGVKKF---LLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIASVEGIEPREVMELLRNEAEVIY 1093
            V L  YK GA++   P   ++DA+                    +KK +KL PVRFVEEGGT+MGHTV+ +W A               G  +P +  +NF LE KE   EP A+F   +A GMGQMETKVF    PE   IE  RG  A +  +V++I  KE    + R+ +E +A +RA+    ++++TD A   E +  F   LL++ +   +K+  +VSWAKFGE S  DFKW+ I+E IA+ EGI+  EV   L  E  V++
Sbjct:   14 VTLGPYKNGALSFTYPKPTVSDAEV------------EAQVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGMGQMETKVFEVAMPESATIESWRGVTAKIMLLVRSINIKENLAADGRSIEEKQAAVRAE----LQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVW 264
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A388KP71_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP71_CHABU)

HSP 1 Score: 138 bits (347), Expect = 1.740e-31
Identity = 90/261 (34.48%), Postives = 136/261 (52.11%), Query Frame = 2 
Query:  335 VTVDLAEYKGGAVTVRVPLIEITDAQAXXXXXXXXXXXXHGGALQKSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKV-----DGRPVPGSKKENFELEFKEGHEEPWATFTAKMA-VGMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDEVRAELRAKGELVV--KSRTDKAVDEGVKKFLLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIASVEGIEPREVMELLRNEAEVIY 1093
            V V L  YKGG + V+    E+TD +                  +K +K ++   + F   G  ++GHTV +N++ K       G+ + G+K + ++LE KE  + PW  F  ++   GMGQ E+K F   FP DF+   LR   A     VK I  K+    + R + E R E+  K ELV   + +++  +D  ++  LL+S E + DK+ + VSWAKFGE S  DFKWN + E++A VE I   +VM  LR EA++ Y
Sbjct:  181 VKVVLGPYKGGVIKVKATKHEVTDEEVERAFK------------EKREKTHEFERINFTGSGA-KLGHTVKINFEGKYAEGPKSGQLIQGTKADMYDLELKERPDYPWKRFVEEITGTGMGQEESKTFMVVFPPDFKAPHLRNVKARFTVTVKAIGVKKELPKDTRPEHEQREEI--KDELVAAEERKSNAQIDPEIRSALLESSEADVDKIASNVSWAKFGENSLKDFKWNLLMEEVARVENIAFEDVMPFLRREADISY 426
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A7S1MV31_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MV31_HEMAN)

HSP 1 Score: 127 bits (318), Expect = 4.230e-30
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 2 
Query:  581 VPGSKKENFELEFKEGHEEPWATFTAKMAVGMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDEVRAELRAKGELVVKSRTDKAVDEGVKKFLLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIASVEGIEPREVME-LLRNEAEVIYL 1096
            + G+K   +ELE K  H+EPW+TFT  +AVGMGQ E K F  TFP+D+ +  L GK    +  VK I  + AKE + R + E RAE  A  E  ++      VD+ +++ L+ +C  +  K   AVSWAKFGE+STLD +W  IKE I   EGI+  + +E  LR +  V ++
Sbjct:    2 MKGTKANMYELELKGDHKEPWSTFTENIAVGMGQDEMKSFVVTFPDDYAVPALVGKQVRFETYVKKIMNRVAKEADARPEAEQRAEAIAALEASMERSNLDKVDQAIRQELMKTCTADTTKATEAVSWAKFGEKSTLDLQWQIIKEAIGRKEGIKDIDAIENFLRQKNTVNWV 174
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A1Y1I108_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I108_KLENI)

HSP 1 Score: 125 bits (315), Expect = 7.080e-28
Identity = 85/260 (32.69%), Postives = 133/260 (51.15%), Query Frame = 2 
Query:  335 VTVDLAEYKGGAVTVRVPLIEITDAQAXXXXXXXXXXXXHGGALQ-KSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKVDGRP-----VPGSKKENFELEFKEGHEEPWATFTAKMAV-GMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDEVRAELRAKGELVVKSRTDKAVDEGVKKFLLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIASVEGIEPREVMELLRNEAEVIY 1093
            V + L  YK GA+ V     E+++ +                AL+ K  K Y    + F   G  ++GH V ++++ K    P     + G+K + FELE +   ++PW TF  ++   GMGQ E+K F  TFP D++   LR   A     V  I  K+  E + R +  +RA++ A      + +T+  +D+ V++ LL++ E + DKV  +VSWAKFGE+S  DFKWN + E++A  E IE  E    LR +A V +
Sbjct:  102 VKIALGPYKDGAIKVSAKKFEVSNDEIEK-------------ALKAKLGKTYDFERINFTGSGA-KIGHMVKVSFEGKYSDGPNAGQLIRGTKADFFELELQPREDDPWKTFVEQIVKNGMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRPEAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFLRRQATVNF 347
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A7R9Y821_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y821_9VIRI)

HSP 1 Score: 122 bits (307), Expect = 1.090e-27
Identity = 86/268 (32.09%), Postives = 131/268 (48.88%), Query Frame = 2 
Query:  317 PDETKGVTVDLAEYKGGAVTVRVPLIEITDAQAXXXXXXXXXXXXHGGALQKSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKVD------GRPVPGSKKENFELEFKEGHEEPWATFT-AKMAVGMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDE-VRAELRAKGELVVKSRTDKAVDEGVKKFLLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIASVEGIEPRE-VMELLRNEAEVIY 1093
            P  +  V V L EYKGGA+ VR     + D  A                 ++  K ++L+ V F   G   MGHTV +   A         G+PVPG   ++  ++ K  +  P   F  A +  GMGQME+K FP  FP+D++ E LRG   L   ++K IA K         D   +R E+ A+ +   +  + K  D  ++  LLD CEV+  K + +V+WAKFGE+S  D+ ++ I E+I   EG+  ++ +   LR EA + +
Sbjct:    1 PGSSAKVDVKLCEYKGGALCVRADK-SVADEAAVDAELE-----------EEMAKEFELVRVNFTGSGAA-MGHTVKLEMSATFGPGHQHAGQPVPGMTVDDLSVDLKTSNPFPLNHFVQAIVEAGMGQMESKTFPVAFPDDYQSERLRGVTCLFTIMIKEIAEKRPLPARTEADRATLREEIAARHDEQARRASAKRADLAIRNALLDGCEVDTQKTVESVAWAKFGEESIRDYAYSMILEEIGGREGLATQDDIKRFLREEASITW 255
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A4D9DGH6_9STRA (ABC transporter domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGH6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.690e-9
Identity = 52/144 (36.11%), Postives = 68/144 (47.22%), Query Frame = 2 
Query:  287 SGPTRMMAGDPDET--KGVTVDLAEYKGGAVTVRVPLIEITDAQAXXXXXXXXXXXXHGGALQKSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKV------------DGRPVPGSKKENFELEFKEGHEEPWATFTAKMAVGM 676
            SG    M G+   T  KG  V L  YK GA++   P   ++DA+                    +KK +KL PVRFVEEGGT+MGHTV+ +W A               G  +P +  +NF LE KE   EP A+F   +A GM
Sbjct:   55 SGALNDMTGEMASTSAKGA-VTLGPYKNGALSFTYPKPTVSDAEV------------EAQVKTAAKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGM 185
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A1Y3PE99_9BACI (Trigger factor n=1 Tax=Bacillus thermozeamaize TaxID=230954 RepID=A0A1Y3PE99_9BACI)

HSP 1 Score: 61.2 bits (147), Expect = 3.780e-6
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 2 
Query:  467 QKSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKVDGRPVPGSKKENFELEFKEGHEEPWATFTAKMAVGMGQMETKVFPATFPEDFEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDE 826
            ++ ++  +L+PV   EEG  + G  + ++++  VDG+P  G+K EN+ L    G   P      +  VGM   E K    TFPED+ +E L+GK A  +  +K I RK    PE+  DDE
Sbjct:  144 RRRERVAELVPV---EEGPVETGDLIRLDFEGFVDGQPFEGNKAENYPLTVGSGALIPGFE---EQLVGMKNGEEKEIQVTFPEDYRVEELKGKEATFRVKIKEIKRKRL--PEL--DDE 253
[Close]
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Match: A0A088T2G1_9BACT (Trigger factor n=1 Tax=Candidatus Izimaplasma sp. HR1 TaxID=1541959 RepID=A0A088T2G1_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.520e-5
Identity = 64/234 (27.35%), Postives = 105/234 (44.87%), Query Frame = 2 
Query:  512 EEGGTQMGHTVIMNWDAKVDGRPVPGSKKENFELEFKEGHEEPWATFTAKMAVGMGQMETKVFPATFPEDFEIEGLRGKNALVQA-----------VVKNIARKEAKEPEMRNDDEVRAELRAKGELVVKS-----RTDKAVDEGVKKF---------------LLDSCEVNADKV-LNAVSWAKFGEQSTLDFKWNCIKEKIAS------VEGIEPREVMELLRNEAEVIYLE 1099
            EEG  + G T I ++D  VDG P  G K EN+EL    G   P   F  +M +GM   E K    +FPE+++ E L+GK+A+ +            V+ +   K+ ++ ++   +E++A+   K E  V++     R D AV E  K                 L+D+ +  A +  L   ++ +F   +  DF+ N +K+   S      VE I  +E +     E EV + E
Sbjct:  157 EEGTLENGDTAIFDFDGYVDGEPFEGGKSENYELAIGSGQFIPG--FEEQM-IGMALGEEKDLNVSFPEEYQAENLKGKDAIFKVKLHEMKVRELPVMSDEFVKDLEKEDINTVEELKADTVKKLEESVEAQNKSARVDFAVSEATKNASYELPEEMIEEEKNRLVDNVKQQAKQYNLELDTYLQFSGVTKEDFEANLLKDAARSISYNLVVEAIGKQEEITATEEEREVKFEE 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G2Q9_ECTSI3.320e-14483.83FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A7S0VQZ5_9CRYP1.880e-4037.31Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A4D9CVA6_9STRA2.720e-3938.20Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A388KP71_CHABU1.740e-3134.48Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S1MV31_HEMAN4.230e-3041.62Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A1Y1I108_KLENI7.080e-2832.69Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7R9Y821_9VIRI1.090e-2732.09Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A4D9DGH6_9STRA1.690e-936.11ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1Y3PE99_9BACI3.780e-635.00Trigger factor n=1 Tax=Bacillus thermozeamaize Tax... [more]
A0A088T2G1_9BACT1.520e-527.35Trigger factor n=1 Tax=Candidatus Izimaplasma sp. ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:310847..318170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1356854.N007_04035
Preferred nametig
PFAMsFKBP_C,Trigger_C,Trigger_N
Model size2110
Max annot lvl91061|Bacilli
KEGG koko:K03545
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons8
Evalue2.91e-11
EggNOG OGsCOG0544@1|root,COG0544@2|Bacteria,1TQQ8@1239|Firmicutes,4H9Q8@91061|Bacilli,277WA@186823|Alicyclobacillaceae
Ec32 ortholog descriptionSecreted hypothetical protein
Ec32 orthologEc-11_003150.1
DescriptionInvolved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
Cds size987
COG categoryD
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.86.1prot_P-littoralis_Contig180.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 311849..318049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789872.2875426-UTR-P-littoralis_Contig180:310846..3118481680789872.2875426-UTR-P-littoralis_Contig180:310846..311848Pylaiella littoralis U1_48UTRP-littoralis_Contig180 310847..311848 -
1680789872.3847377-UTR-P-littoralis_Contig180:318049..3181701680789872.3847377-UTR-P-littoralis_Contig180:318049..318170Pylaiella littoralis U1_48UTRP-littoralis_Contig180 318050..318170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789872.3004372-CDS-P-littoralis_Contig180:311848..3120131680789872.3004372-CDS-P-littoralis_Contig180:311848..312013Pylaiella littoralis U1_48CDSP-littoralis_Contig180 311849..312013 -
1680789872.3099961-CDS-P-littoralis_Contig180:313215..3132901680789872.3099961-CDS-P-littoralis_Contig180:313215..313290Pylaiella littoralis U1_48CDSP-littoralis_Contig180 313216..313290 -
1680789872.32073-CDS-P-littoralis_Contig180:313976..3141171680789872.32073-CDS-P-littoralis_Contig180:313976..314117Pylaiella littoralis U1_48CDSP-littoralis_Contig180 313977..314117 -
1680789872.3322275-CDS-P-littoralis_Contig180:314799..3149041680789872.3322275-CDS-P-littoralis_Contig180:314799..314904Pylaiella littoralis U1_48CDSP-littoralis_Contig180 314800..314904 -
1680789872.342282-CDS-P-littoralis_Contig180:315496..3155531680789872.342282-CDS-P-littoralis_Contig180:315496..315553Pylaiella littoralis U1_48CDSP-littoralis_Contig180 315497..315553 -
1680789872.3556864-CDS-P-littoralis_Contig180:316280..3163871680789872.3556864-CDS-P-littoralis_Contig180:316280..316387Pylaiella littoralis U1_48CDSP-littoralis_Contig180 316281..316387 -
1680789872.3642612-CDS-P-littoralis_Contig180:317055..3171911680789872.3642612-CDS-P-littoralis_Contig180:317055..317191Pylaiella littoralis U1_48CDSP-littoralis_Contig180 317056..317191 -
1680789872.374771-CDS-P-littoralis_Contig180:317848..3180491680789872.374771-CDS-P-littoralis_Contig180:317848..318049Pylaiella littoralis U1_48CDSP-littoralis_Contig180 317849..318049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.86.1

>prot_P-littoralis_Contig180.86.1 ID=prot_P-littoralis_Contig180.86.1|Name=mRNA_P-littoralis_Contig180.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=329bp
MNASAYSRVSLLVVALGMICTCCNSFFVSPTGPLIRQQTGRSRLFSTTAG
AASRPSGPTRMMAGDPDETKGVTVDLAEYKGGAVTVRVPLIEITDAQARE
REREREGGGGHGGALQKSKKPYKLIPVRFVEEGGTQMGHTVIMNWDAKVD
GRPVPGSKKENFELEFKEGHEEPWATFTAKMAVGMGQMETKVFPATFPED
FEIEGLRGKNALVQAVVKNIARKEAKEPEMRNDDEVRAELRAKGELVVKS
RTDKAVDEGVKKFLLDSCEVNADKVLNAVSWAKFGEQSTLDFKWNCIKEK
IASVEGIEPREVMELLRNEAEVIYLEKK*
back to top

mRNA from alignment at P-littoralis_Contig180:310847..318170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.86.1 ID=mRNA_P-littoralis_Contig180.86.1|Name=mRNA_P-littoralis_Contig180.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7324bp|location=Sequence derived from alignment at P-littoralis_Contig180:310847..318170- (Pylaiella littoralis U1_48)
TGCGCCGAACGTGTCGAACGTGTCCCCGTGCTGCTTTGCGTCTCTCGCTC
TCTGCCGCATGCACTCGCAGAGAAAGCGCCACCAAGACTGACCCCGCACG
AATAAACTGGAGGCTGAGAAAATGAACGCCTCAGCCTATTCACGCGTTTC
GCTGTTGGTCGTAGCATTGGGCATGATCTGCACATGTTGCAATAGCTTCT
TTGTCTCTCCCACAGGACCCCTCATCCGGCAGCAGACAGGTCGGAGCAGA
TTATTCAGCACCACAGCGGGGGCTGCGTCGCGACCGAGCGGACCTACGCG
AATGATGGCAGGCGATCCCGATGTGAGTCTTATTTTACGGATAGGTAGGT
CCACATCGCAGCAGCTGCATCACCCCCTTCGACTCCTTGTTGCAGGGCCA
CACCTTCAACTGCAGTTGGAGTGTTGTGCGCTCGCTCCTACACTCGCACC
CTTCTTCAGAGAGTTGCTGTTTTCTCCGGCCCACACACACACACAACACT
CCCGCCGTCTGCAGCACACACCCAAGCTTTTGTCGATAAACTACCAGCTG
GTATTGTGTTCGTAGTGTGCTCGTGCCGTATCGGCGGCCGACTGGCATTA
TGTGAAGCCTGGATCGGCGGCGGTTGGGTTGTGTTCCCAAGGCGGCGTGT
CGTGTTTCGATTCGCTAGTGCAGCACGACGAGGACACCTACGATATGTAC
AACTTTACTTTCGTGCCAGGCAGGTTCGTTCTTCAAATCCTTATACTCCA
AAGTACAGCAGGATCAGAAATGAATGCTGGCATCACACAGCAGCAGTAGC
AAATGTGATGGCGTACCTTTTTTGCAAGGCCACGCAGTGGGCGAAAGGAA
CGCCCCGTGTATAGGTACAAATGACGTGACGCTGAAAGCACTAGCTTTCC
AAAATATATTTCTTCTGCGACACGGGTGCATACAACACACACGCCGGCCA
TTGAATGTTTCAATGATCCGCGTTTCCAGGAAACGAAAGGAGTCACCGTG
GATCTAGCCGAATACAAGGGTGGGGCAGTCACCGTCAGGGTTCCTCTCAT
CGAGATCACCGACGCGCAGGCGAGAGAGAGAGAGAGAGAGAGAGAGGGGG
GGGGGGGGCACGGGGGTGCAGAGGTAGAGAGGGGAGACTGATACAACAGA
GTAAGTAGGAAACGGAGATAGTGTGTTTTTTACTTCGCATGGGGTTATCT
GCACCGGCGGTCCTCAGAGTACCGCTAGGCTAACGCTCTGCTGTCTCGTA
CTCTGGGTACCTGTTCTACAGTGCGTATGAAAATATTTTACATCAAAAGT
TTCTGCCTTAGCGGCAACAAATGGTAGAACCATCGGCATTCAACAGGGGT
TTATACGGGCCGCGACGTGACCCCTTTTGCACGTGCGAAGGACACCCAGA
AGGCTGGAATTTATTCCAAGTTACATGTAAGTCTAATGATTGGTACATGA
ATATTAGTACACAGGTTCAAACGATACAGGGGTGAGATTTGTTTGGTCGA
AATACGTTATATTCCTTTCTATTGCTGTTGTCAAGATGAACCGAGTAGTA
GGCCGGTTAATGAGGTGTCTACTACGAAAAGGAAGCGTTATCTGGCCGCA
CATCTCATAGCCCCTGCACCGGCGGTTGTTGTCATCTTTATCGCCGACGG
GGTGTGATACGGTATGATGGTGATAGAAGCGCGCTGTCTGGGTTTCGGTT
TTACATGCCGACCGACTGCACGTGATGTGGTGCTGAGAGCTGACCTGATG
TGTTGTCTTCCAAATTACGCCCGCAGTTGGAAGGAGCGTTACAGAAGTCA
AAGAAGCCGTACAAGCTCATCCCCGTCCGGTTCGTTGAGGAAGGAGGCAC
GCAGATGGGGCACACTGTCATAATGAACTGGGATGCGAAGGTGAGGGACG
TTGTGCCCGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTC
ACGTGAATTTCGTTCGGACTTCCATGTACGATTGTCGCATGTCAAAAGTA
AAATTTTGGCTCACGAGTAGCTGACGGTTTCTTTTTTCAAAGCTGTAATT
AAACTACGTCGAAACGGTGATTGGTGTTGGGGATCCAATGTAACCACAAC
GAAAATTGTAGGTATCTCACGAACAGCCGATGTCGTTGATCCATCGAGTC
CGGCCCACACACGTTTCCAAACACAGCTCAAAGAGGAAAGCCGACCTTCT
CTTTTATACACCTCTTGCAGATCTTAACACCATAGTTGGTACTCCCAACG
CCAGCTACAAGGGACCCATTGCTCCTGCTATGCTTACCTCCATGATGTGC
AGGACGCAGTGCTAATGCGTGTGCGGCTACCCGCACGACAAATTTGGTTT
CCTACCCTGCTGTGCTGTGTAGGCCTAAACAGTATCGCCTATTCGCCCTT
TGTTGCTGTTTTATTTCCACTAGGTTGCCGTCGTTCCCTTCAGCCCTGTC
CCGCCTTGCTTCTGTGGCGGCATTCATTTTGTTCCGCCACGTCGTCTTTC
GTTTTCTCTCATTGGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTG
CTGTGCTGTGCTGTGTTGTGCTGTGCTTTGCTGAACTGTGCTGTGCTGGC
GGCGTATACGATACTAGGTCGACGGCAGGCCCGTGCCCGGCTCGAAGAAG
GAAAACTTCGAGCTAGAATTCAAGGTGTGACAGCAGTCGATCTGCCAAGC
ACTTACTTTTTGTTGTTTGATTTGATTCCTTCGATTTCGTAGAGTTGATG
TACGTGACGTATCATTTACCATCATCAATGACCGCTGGCGTCACTGCTGA
AGGTGCAAAGTTTCAAGGAGCCTTGCTTTGTTGGGAACGGACCTGGTGTA
AACGCGCTGTAGGCGTGTGTAGGTATGATTCCATTATTGACCTTTTATTT
CGCGCGTGAGTGATTCTGTGGCATCGCCGCATGGTCACGATGAAGATAAA
TGAAAACTCCCTGCCTCCACCCCCAAAAGCAGAAGGAGGGAGCAGTTGGC
CGCACGGTAATACTGCTCTCGACGGTGACATCAGAAAACATTCCAAGGCA
CGCCCTTCTCTGCCTCTGATCATACAAAAACGAACATGAAGGTGGAGCAC
GATTGGAACGTGTCACCGACTGTTGGCGGTTCGGGCAGAGCTTATTTTCC
CCCGGTCGTTATGTTTCGTTTTGTGTAGAATATCTGATCTCACTTGGGTA
TCACTTGGGTATCTTTTGCCGTCTCGTGCGGGGCTCGTGTCATATGACCC
CGTGTTCGAATGACAGGAGGGGCACGAAGAGCCGTGGGCGACGTTCACAG
CGAAAATGGCGGTCGGCATGGGGCAGATGGAGACCAAGGTGTTCCCGGCA
ACCTTCCCAGAAGATTTTGAGGTACGGATGCAGTAGAAAACATGTAAGAC
ATGGTATGGGCCACGCCTAGATAATAAATAATGGGTGGGAGGCACGACAC
ATGGTGGGCTCCCTCGTGGGAGGCTTACGTATAGCAGGAACGCCCAGAAT
GTCAGTCTCACACAGGAAGTTCGTCACACTCAGGATAGTACCTTGTCAAC
CCATGAGCGCCGACTCCTACGGTGTGGGGCGTCGCTTTTCTAGCCCAAGC
TACAGTAAGAGATGAGAGCAACGCGAAGCACACAAGCGGCATGGAAGGCA
CTTGACCGTCAGCACTTTTGCACGTGACATTGGTCGTTCGCAGCAGTACC
GTAGTCGGCCCGAGTTTATTGGGTGAGATAGAAAAAGGTAGTACAGTGAC
GACAGAGTGCACGAGAAGGCTTTCTCGCCCGGATGTCCATGACAATACAC
TTGTTTCGTTCATGTCGCGGAGACACTCCGCTGTTTGGAAATAAACGCTT
TGCGAACCCATAAAACTGTAATCTCGGTTGTACTTCGAAAGCCCTCAACA
GCAATAGCAAGTCACGGTGTGGCCAGGGCCCGACGACCAGGCTGTAACGA
CCAGGCTGTGATACATCGAACCCCGGCTTTATTTCGTCGTTTCATTTGAC
CGTGTTCCCCCGGTCATGTGCGTGCTAATCGGCGACCTTCGGGTGGAGTG
AAGATTGAAGGCTTGAGAGGCAAGAATGCGTTGGTGCAGGCGGTGGTAAA
GAACATCGCAAGAAAAGAGGCGAAAGAACCAGAGATGAGGAACGACGACG
AAGTGAGGGCGGAACTAAGGGCGAAGGGGGAGCTTGTCGTGAAGGTACGC
CACGGTGGAGACGCCGATTGCACTTTCCGACGTACTGCGTAGTACCCCGT
TTATGTTACCCCGTTTGTCGACACCGTCGGTGATCACTTCAAACTGCTGC
CGGTCTTGTTTTAAGAACATCAGCTGACATCGTCTGGCCGAGGAAGATAT
ATCGCTGTCCATAAAGTAACAGCAGGAATGCCTCCATGAGTCAACGCCAC
GAAACACGACTAGAAAGGGTACCTTCATGCACAGGGGCCTGACTCGCAAG
AATCCTACCCACCCATAGCTTGTGTGGAGTGACCGGTTGTGTTTTTTCCA
TGGTACTTTCCCGCCCGCAGGGTGAGTCAAGGGCCCGGCGCACTGATGCT
GTTTCACAAATCGGTCGTATCAATTGTCATTAGTGTGGCGCTTTCCTCTG
CTATCGATTGTCGACTCTCCCGACGTGTAGGGAGTATCTTCCCCCTACGC
CTCGGCGAAGAAAGGGGGGTGGCCGAGGACTAGTGGATTAGGAAGGATTG
CGGTGTTGTCAGTACGTAAGCACAGAATATTCCAGGAAAGTCGACGCGAT
ATTCTGCTCAACTTGACGAAGCGCGTAGCGTGGGGAAGTATTCGGACGTG
GCACGACATCACGTGGCACGACAAACCCCGCCTCCCCTCATCCCCCAAAC
CCCCCCCTCATCGTCGCATTCTGTCTGCAGAGCCGAACCGATAAGGCGGT
TGACGAGGGAGTGAAGAAGTTTCTCTTGGATTCGTGCGAAGTCAATGCTG
ACAAGGTACGTTCACAGCCCAATCAGGTGCTCATCTGCCTTGTCAACACT
CACGCAAGCCGTGAAGTGCACTTGTTCTGAAATGGAATGCCGTCACTGAC
AAAGTGTGTACCTCGCGGTGTCTAATTCATCTTTCAAAATTTTCAGGAAC
ACCCGATCATTCCGTCCTCAACTTTGGTAGGACACGAGGCAGTTTTGTGC
CAGACGCGCTGTTTATCCGCACCCTTCTCGCTTGCGCAATTGTTTTTCTC
GGGGCGCACAAAGTACACACGAACGCTAATCTCGTACGCGTGGGGCCTCG
CTTTCACCTGACCATGAAATAATCGTATTTATACGAAGGAGAGAAGATAG
ACTAGACTCGAGACAGACTACACTGCAGCGAATAGATGGGACACGCAAAA
AACGACAAGGCTTCCCAGGGACTGTTGTACATTTTCTTGTTTGCCGAGGG
AGATTCGTTTAAGCCGTTCGCTGGAAAACGGCACGGACATGGTCAACGAA
GCGCGCCTGCCTGGCTGATGCTCTCGTCTATGTTCATGTTCGCACCGCGC
TGATTGCTGGATTTTGCCTGTTCACCAGTTGTACCCTTCAGAAAGTTCTA
CGCACGTCGAAACACTTTTTCTACATTTTTCGTGATTGAGACCCGCGAGA
GGGCAATGTGTTTCGTGTCATGAGCAGCGAGTGATAGCGAAGGCTCTTTG
CGTAACACGAGGTGGTGTGTGTGTATGTTGATGTTGTTTTTGGTTCCTAA
CAGACATACACACAAACCACCAAACCAGGCACACATCGTGCTAGGAAGAA
AAACGAATACTTTTACTTGTAGATATAAGAAGGCCAACTAAGGAAAGAAC
GAAAGAAAAACATGAGGAGATACCGCCCAACCATGGGATATCTTCTGGTG
GGCCAAAATACAACAAATACAGAAAAATAGACTCGAACAAAATTGAAAAC
AAAAACAACCAAAGACAGAAGGCCAAACGAAGAGATGACCAGCAATGCGA
GAATAAGAGACGACCAAAAAAAAGTGATTACTTAAAGGAAAAGGTGAGTA
AGTGTGTGTGCACGCTTCCATGCCCTCAAGAGCTTCGGTGTGCGTGGGGT
ATTTAGTTTGGAAAACGTCGTTGATTTTCTTCACGCGATAACATTGCTCC
TCGCGTCATGCTCCGCTCGACCCCTCCACGTGCTTCCCTTGCGGATACCG
TGCGCAGGTCCTGAACGCTGTGTCGTGGGCGAAGTTCGGCGAACAGTCGA
CCCTTGACTTCAAGTGGAACTGCATCAAGGAGAAGATAGCGAGTGTTGAG
GGTATCGAGCCTCGGGAAGTCATGGAGCTCCTTCGAAATGAGGCGGAAGT
GATTTACCTCGAGAAGAAGTGACAAAGCTAGTTTTCAACATAACCCTAGA
AAGAGAGAGAGAGAAGGTGCCCCCAGTGTTCTGGACGGTGGAGTAGTCTT
GCGCGCGTACATGGCTCATCCCCCCGATTAGACTGTGTGGGAATAGTAGT
GCACCGCGCATGCCTCTCCGTTTCTAGTAGTCTGTTTGAGCGTAGGAGGG
GTTAAAAGTAGTGCCCATTCTGTGTTCTACTCATAGAAGTGCGGCGTTTC
AAAAGTGCCTCTTCGAAGAAACATTCGTGTGCCGAATGACACAATTGGGT
GAAAATGCCGGCCGGAACCCCTCGGCATTCGTCGTTTTCTTATTTTTCCC
AGCCTTGGGGCATCTTTTCGTGTGTTCGGACCGAGCTTCAGCTGGCGGCA
GCTGGGATTTTGACCTTTTATGTCTCGGGGCTGTACCTCCAACATAGCAT
TTTTGTGGTATCGAAAAGTTTTGTCGTCGCCGAGTTTTGAGCAGTTGAAT
TGAGTTCACTGCAGAGTAGGATTGTGTAAGTGGTGGGTGGTGGTGTTGCG
TGGTTCGGCGGATGATGACTGACACGGACGGACGGCACAATGAAAAAAAT
AGCTTAGCAATACGTTGGGTGTCCTCACAGTGTGAGGCATGTGAAAAGGG
GTGATAAAAGGTGCCCCCAGTTGACCTTATTCTCTGATCTAGTGCTGCTG
ACACAAAGTTGTTCTTGTCTTGTGGTATGGTGTCAGGGAAGCAGCAACCA
CTGAAACCACACAGCAGGCGCCGACTCCCGACATGGAACCCTTCCAATGT
GGACACGAGGCACTACAGACATACATGGCGTCGGATGGTGCATATGGACG
GGAGAAGTAATCAGATAATAGTCAGGTCCTCCGAGACCCACCGCCACCCC
ATAATTTAGATCTCCGCCTCGAGCGTGTATGATTTATGACGAGCGCTCTT
GAATCTGCGTCTCAAATACGTTTGTGAGATACGCATACTTGAGATATAAT
GATGTTATACCTTCGTGGTGTGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig180:310847..318170-

>mRNA_P-littoralis_Contig180.86.1 ID=mRNA_P-littoralis_Contig180.86.1|Name=mRNA_P-littoralis_Contig180.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig180:310847..318170- (Pylaiella littoralis U1_48)
ATGAACGCCTCAGCCTATTCACGCGTTTCGCTGTTGGTCGTAGCATTGGG
CATGATCTGCACATGTTGCAATAGCTTCTTTGTCTCTCCCACAGGACCCC
TCATCCGGCAGCAGACAGGTCGGAGCAGATTATTCAGCACCACAGCGGGG
GCTGCGTCGCGACCGAGCGGACCTACGCGAATGATGGCAGGCGATCCCGA
TGAAACGAAAGGAGTCACCGTGGATCTAGCCGAATACAAGGGTGGGGCAG
TCACCGTCAGGGTTCCTCTCATCGAGATCACCGACGCGCAGGCGAGAGAG
AGAGAGAGAGAGAGAGAGGGGGGGGGGGGGCACGGGGGAGCGTTACAGAA
GTCAAAGAAGCCGTACAAGCTCATCCCCGTCCGGTTCGTTGAGGAAGGAG
GCACGCAGATGGGGCACACTGTCATAATGAACTGGGATGCGAAGGTCGAC
GGCAGGCCCGTGCCCGGCTCGAAGAAGGAAAACTTCGAGCTAGAATTCAA
GGAGGGGCACGAAGAGCCGTGGGCGACGTTCACAGCGAAAATGGCGGTCG
GCATGGGGCAGATGGAGACCAAGGTGTTCCCGGCAACCTTCCCAGAAGAT
TTTGAGATTGAAGGCTTGAGAGGCAAGAATGCGTTGGTGCAGGCGGTGGT
AAAGAACATCGCAAGAAAAGAGGCGAAAGAACCAGAGATGAGGAACGACG
ACGAAGTGAGGGCGGAACTAAGGGCGAAGGGGGAGCTTGTCGTGAAGAGC
CGAACCGATAAGGCGGTTGACGAGGGAGTGAAGAAGTTTCTCTTGGATTC
GTGCGAAGTCAATGCTGACAAGGTCCTGAACGCTGTGTCGTGGGCGAAGT
TCGGCGAACAGTCGACCCTTGACTTCAAGTGGAACTGCATCAAGGAGAAG
ATAGCGAGTGTTGAGGGTATCGAGCCTCGGGAAGTCATGGAGCTCCTTCG
AAATGAGGCGGAAGTGATTTACCTCGAGAAGAAGTGA
back to top