mRNA_P-littoralis_Contig180.73.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.73.3
Unique NamemRNA_P-littoralis_Contig180.73.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 7.520e-142
Identity = 296/438 (67.58%), Postives = 311/438 (71.00%), Query Frame = 1
Query:  112 MRKSGVKFGLIGTASSLKKGGAPA----NKGRPIGSKPAPRRRPPGATSVFDADSDDEEGGPKADLNGVAAVNKRLAAISAKQEKAAKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATADYEMQDGSAKAKTPYVRRKXXXXXXXXXXXXQDAAGTDMRAERGDKSSPEKAHEQETDT--GPTARMVDSRAAEAKRREAVPMGTRGHDESTAVRRREERDEDDAPGDPEGSAKRARLGEEGGXXXXXXXXXXXXXXXXXXXXPQEATAEEKSAVEELEKVKKAAAAXXXXXXXVKAARERFLARKKAA 1407
            MRKSGVKFGLIGTASSLKKG + A     +GRPIGSKPAPRRRP G+TSVFDA+SDDEE   K DL+GV AVNKRLAAISAKQEK AKKEYEDAL+ADPSVFDYDRVYDGMKESRESK  A TVA EKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKERE QDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGM GFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAAT +YEMQDG+ +A        XXXXXXXXX     A G       G       +    TD   GPTARMVD RA E K+      G R  D   + RRR      D+    +  AKRARL  E                        E T EEKSA E  +        XXXXXXX   ARERFLARKKAA
Sbjct:    1 MRKSGVKFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPAGSTSVFDANSDDEEEDSKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDEYEMQDGNEQAXXXXXXXXXXXXXXXXXEGGP-ANGASQGGREGRDGGDADSSPGRTDESGGPTARMVDPRAGEQKKSRRDEAGVR--DSERSGRRR-----GDSGEAVDNVAKRARLAGEASDGGDASVGDDGGVEQRQ----DERTDEEKSAAEAADXXXXXXXXXXXXXXXXXXARERFLARKKAA 426          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A835YZI8_9STRA (Coiled-coil domain-containing protein 55-domain containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 4.680e-54
Identity = 130/250 (52.00%), Postives = 165/250 (66.00%), Query Frame = 1
Query:  130 KFGLIGTASSLKKGGAPANKGRPIGSKPAPRRRPPGATSVFDADSDDEEGGPKADLNGVAAVNKRLAAISAKQEKAAKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVA--HEKEKR-QPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKT---GMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATADYEMQ 861
            ++GL+G A +LK     A   +    + AP R P  A + F  DSD + G    D    AAVN+RLAA  A++ +  +K    A+  DPSVFDYD VYD + + R+ KA A   A  ++K KR QP+YIGNLL+QAK+R VE DR++DRKL KEREE DK  G A MKFVTSAYK KLMEQKKWE+ Q+ E ERE + +       GM+ FYSNL+TKNIAMGGDV   A SAFTAGS+RHAA A ++++
Sbjct:    3 RYGLLGNAKTLKAQSVAAKTAK--APRKAPARGP--AVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVAN-ATSAFTAGSRRHAAAAAFKVK 247          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A7S1XVS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVS8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.760e-35
Identity = 87/153 (56.86%), Postives = 114/153 (74.51%), Query Frame = 1
Query:  379 ALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEG--EATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 831
            AL  D SVFDYD VYD M  +R+S A A   A E+++R+ KY  NLLKQA+MR ++SDRI++RKL++E  E  ++ G  +   KFV +AY+K+L E++ WE  ++ E ERE RNDVTKTGM GFYSNL+TKNIAMGGDV K+A S+FT GSK+
Sbjct:    4 ALTEDASVFDYDGVYDSMTSARDSAAAAQ--ASERKERKSKYTENLLKQAQMRKLQSDRIYERKLRREAAEVAEMHGGVKDEDKFVGAAYRKQLEEREAWEKAEREEAEREARNDVTKTGMMGFYSNLLTKNIAMGGDV-KNAQSSFTVGSKQ 153          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A7S3HBP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBP6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.620e-33
Identity = 89/196 (45.41%), Postives = 123/196 (62.76%), Query Frame = 1
Query:  244 SVFDADSDDEEGGPKADLNGVAAVNKRLAAISAKQEKAAKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 831
            S+FD D  DE+    A  N V+ VN +LA  +A  E+        A  A+P ++DYD  YD  K   ++K   +     K+  + +Y+ NLL  +KMR  E +R+F++ L KER+ +D   G+   KFVT+AYKKKL+E KKWE + +L DE EQR DV K+GM GFY+NL+TKN+AMGGDV+  A S +TAGS R
Sbjct:   31 SMFDRDDSDEDS--SAVSNDVSRVNAQLARRNAILEQTMSA----AASAEPDIYDYDGAYDSFKAKEQAKHQLSQPIATKDAPKARYVNNLLATSKMREKEKERVFEKNLLKERKVEDAEFGDKD-KFVTAAYKKKLLEDKKWEYEDRLADEVEQRTDVRKSGMEGFYANLLTKNVAMGGDVDAHAVSVYTAGSAR 219          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: W7TFP5_9STRA (DUF2040 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFP5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.440e-31
Identity = 97/243 (39.92%), Postives = 140/243 (57.61%), Query Frame = 1
Query:  130 KFGLIGTASSLKKGGAPANKGRPIGSKPAPRRRPPGATSVFDADSDDEEGGPKADLNGVAAVNKRLAAISAKQEKAAKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTK---------TGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 831
            K+GL+      +K   P  +GRP  +  APRR P G+    D D  D+ G  +  L   A+ NK L A S K +K+ ++    A  +DPS++DYD VYD +   RE +      A ++EK+  +YI NL + A+++  E DR ++R+L KER+E+D L  +  + FVTSAYKKKLME +KWE   +LE+                   +GM  F+SNL+TKNIAMG DV+ +A SA+T GSK+
Sbjct:   10 KYGLVVP----QKKAVPGMRGRPRPASAAPRR-PAGSAFSLDDDDSDDNGQEEDGLASKASFNKMLQAQSIKAQKSLEEAEAAARASDPSIYDYDAVYDEIHAKREERDNMAAEAAKEEKKTSRYITNLKRAAELKKQEQDRFYERRLAKERKEEDALYKDKDV-FVTSAYKKKLMETQKWETIDRLEEXXXXXXXXXXXXKGAPGGGSGMDAFFSNLLTKNIAMGADVKVAARSAYTVGSKQ 246          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A7R9YG81_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG81_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.660e-29
Identity = 88/200 (44.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:  235 GATSVFDADSDDEEGGPKADLNGVAAVNKRLAAISAKQEKAAKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGE--ATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSK 828
            G +S F +  +D E  P+ADL+ V +   R A  S + ++   ++ + ALE D +VF+YD VYD    SR +K     VA +K KR+ KY   LL+QAK+R + +DR+++RKL +E+ E+ KL G+  A  +FV +AY+K+L E++++E   + E E E   DVTK GM+GFY NL+TKNIA GGD+E  A S+FT GS+
Sbjct:   33 GVSSAFASTVEDVET-PQADLSAVNSALARGAYTSKRAQRETLEQQKAALEQDATVFEYDGVYDDFVNSRAAKEAQ--VAEDKRKRKSKYTEALLQQAKLRKLANDRVYERKLLREQAEEAKLNGDVKAEDRFVGAAYRKQLEERERYEAALKAEAEAEAAADVTKKGMTGFYQNLLTKNIAFGGDIEN-ATSSFTVGSR 228          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A1V9ZKX0_9STRA (DUF2040 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKX0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.340e-29
Identity = 82/158 (51.90%), Postives = 107/158 (67.72%), Query Frame = 1
Query:  358 AKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MSGFYSNLITKNIAMGGDVEKSANSAFTAG 822
            A++  ++AL +DP+VFDYD VYD M+  R  +  A  V       Q KYI  LL++AK+R +E DRI +R+L KEREE DKL G+ T KF+TS+YK+KLME K+WE +     E E   DVTK G   M+GFY+NL+T NIAMGG +EK A SA+T G
Sbjct:   60 AERAVQEALASDPNVFDYDGVYDSMQAERVKQKAAKKVEGVP---QSKYINVLLEKAKIREIEHDRIRERRLLKEREEDDKLHGD-TEKFITSSYKRKLMEAKRWEEEDARLAEIEAAQDVTKRGELGMAGFYANLLTNNIAMGGTIEK-ATSAYTTG 212          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A2D4BZE0_PYTIN (DUF2040 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZE0_PYTIN)

HSP 1 Score: 127 bits (320), Expect = 7.400e-29
Identity = 97/252 (38.49%), Postives = 140/252 (55.56%), Query Frame = 1
Query:  379 ALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATADYEMQDGSAKAKTPYVRRKXXXXXXXXXXXXQDAAGTDMRAERGDKSSPEKAHEQETDTGPTARMVDS--------RAAEAKRREAVPMGTRG 1101
            ALE DPSVFDYD VYD ++ SR+ K        E EK+Q KYI +L+++AK+R +E +RI +R+L KER  +D L G+   K ++++YK+KLME K+W+ +    D  E   DVTK G   M+GFYSNL+TKNIAMG D   S+ SA+T G K+   T   E  D SA+ +                   +  A T     R +KS  +  H  + +T P AR  ++        +++E+++REA   G  G
Sbjct:   50 ALEEDPSVFDYDGVYDEIQSSRQDKLSKRKAEREAEKKQSKYITSLVEKAKIREIEHERIRERRLLKERATEDALYGDKE-KLISASYKRKLMEMKRWDEEDARLDAVEAAEDVTKRGTEAMAGFYSNLLTKNIAMGSDAS-SSRSAYTVGGKKETDTR--EDADASAEKR-------------------EQPAWTPRHIGRDEKS--QSQHHDDKETHPVAREEENEEQPLKKLKSSESEKREATTSGQTG 276          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A662Y6L8_9STRA (DUF2040 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6L8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.570e-28
Identity = 93/207 (44.93%), Postives = 123/207 (59.42%), Query Frame = 1
Query:  280 GPKADLNGVAAVNKRLAAISAK--QEKAAKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATADYEMQDGSAKAKT 885
            G KAD +  AA  +R+   +A+  Q+   ++    AL  DPSVFDYD VYD MK +R+S+     V  E EK+QPKYIG LL QAK+R VE++RI +R+L  ER+  D L G+   K V+++YK+KL E K+W+ +       E R+DVTK G   M+GFY+NL  KNIAMGG     A SA+TA           E QDG  K  T
Sbjct:   28 GNKADEDAKAADRRRVGLEAARSLQQSQVERTRAQALADDPSVFDYDAVYDDMKSARQSEVTKRAVQREAEKKQPKYIGTLLAQAKIREVENERIRERRLLHERKADDALYGDKE-KLVSASYKRKLQEMKRWDEEDARLANLEDRDDVTKQGEHAMAGFYANL-NKNIAMGGSTAN-ARSAYTA---------KEEPQDGDRKEST 222          
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Match: A0A7S4E5L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5L4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.830e-28
Identity = 79/177 (44.63%), Postives = 114/177 (64.41%), Query Frame = 1
Query:  313 VNKRLAAISAKQEKAAKKEYEDALEADPSVFDYDRVYDGMKESRESKAVATTVAHEKEKRQP--KYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHA 837
            V +++  + A Q K A  +   A   DPS++DYD VYD MKE    K  A +        +P  +YIG+L + AK+R  E DR+++R+L KE +EQDK     T +FVT+AYKK+L E +KW+ + +  DE E+R     +GM+GFYSNL+T+NIA G DVEK+A S++T GS+R+A
Sbjct:   52 VAQQMRDLGAAQRKRAXXQAAQAAAVDPSIYDYDGVYDQMKEDERKKISARSGLSNTNHSKPGARYIGSLKQAAKVREREFDRVYERQLLKE-QEQDKDTYGDTERFVTAAYKKQLQESRKWDAEDRRMDEVEERTSAQTSGMAGFYSNLLTRNIAAGADVEKAAVSSYTHGSRRNA 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.73.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R5_ECTSI7.520e-14267.58DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YZI8_9STRA4.680e-5452.00Coiled-coil domain-containing protein 55-domain co... [more]
A0A7S1XVS8_9STRA6.760e-3556.86Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HBP6_9STRA2.620e-3345.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TFP5_9STRA2.440e-3139.92DUF2040 domain-containing protein n=2 Tax=Monodops... [more]
A0A7R9YG81_9STRA2.660e-2944.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1V9ZKX0_9STRA4.340e-2951.90DUF2040 domain-containing protein n=1 Tax=Achlya h... [more]
A0A2D4BZE0_PYTIN7.400e-2938.49DUF2040 domain-containing protein n=1 Tax=Pythium ... [more]
A0A662Y6L8_9STRA1.570e-2844.93DUF2040 domain-containing protein n=2 Tax=Nothophy... [more]
A0A7S4E5L4_9STRA1.830e-2844.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:262030..265210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2R5
Preferred nameNSRP1
PFAMsDUF2040
Model size2079
Max annot lvl2759|Eukaryota
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons4
Evalue6e-146
EggNOG OGsKOG2117@1|root,KOG2117@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF2040
Ec32 orthologEc-11_003220.1
EC3.4.17.22,3.6.4.12
DescriptionmRNA binding
Cds size1299
COG categoryL
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.73.3prot_P-littoralis_Contig180.73.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 262699..265099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789871.615365-UTR-P-littoralis_Contig180:262029..2626981680789871.615365-UTR-P-littoralis_Contig180:262029..262698Pylaiella littoralis U1_48UTRP-littoralis_Contig180 262030..262698 -
1680789871.6747782-UTR-P-littoralis_Contig180:265099..2652101680789871.6747782-UTR-P-littoralis_Contig180:265099..265210Pylaiella littoralis U1_48UTRP-littoralis_Contig180 265100..265210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789871.6314383-CDS-P-littoralis_Contig180:262698..2633681680789871.6314383-CDS-P-littoralis_Contig180:262698..263368Pylaiella littoralis U1_48CDSP-littoralis_Contig180 262699..263368 -
1680789871.6421142-CDS-P-littoralis_Contig180:263828..2639681680789871.6421142-CDS-P-littoralis_Contig180:263828..263968Pylaiella littoralis U1_48CDSP-littoralis_Contig180 263829..263968 -
1680789871.652837-CDS-P-littoralis_Contig180:264302..2644621680789871.652837-CDS-P-littoralis_Contig180:264302..264462Pylaiella littoralis U1_48CDSP-littoralis_Contig180 264303..264462 -
1680789871.6612344-CDS-P-littoralis_Contig180:264770..2650991680789871.6612344-CDS-P-littoralis_Contig180:264770..265099Pylaiella littoralis U1_48CDSP-littoralis_Contig180 264771..265099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.73.3

>prot_P-littoralis_Contig180.73.3 ID=prot_P-littoralis_Contig180.73.3|Name=mRNA_P-littoralis_Contig180.73.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=433bp
MRKSGVKFGLIGTASSLKKGGAPANKGRPIGSKPAPRRRPPGATSVFDAD
SDDEEGGPKADLNGVAAVNKRLAAISAKQEKAAKKEYEDALEADPSVFDY
DRVYDGMKESRESKAVATTVAHEKEKRQPKYIGNLLKQAKMRAVESDRIF
DRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQR
NDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATADYEMQ
DGSAKAKTPYVRRKSSDDDDGDDDDDQDAAGTDMRAERGDKSSPEKAHEQ
ETDTGPTARMVDSRAAEAKRREAVPMGTRGHDESTAVRRREERDEDDAPG
DPEGSAKRARLGEEGGAGASSGASSEVAVTGGGVQQPQEATAEEKSAVEE
LEKVKKAAAAKVKKEAAVKAARERFLARKKAA*
back to top

mRNA from alignment at P-littoralis_Contig180:262030..265210-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.73.3 ID=mRNA_P-littoralis_Contig180.73.3|Name=mRNA_P-littoralis_Contig180.73.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3181bp|location=Sequence derived from alignment at P-littoralis_Contig180:262030..265210- (Pylaiella littoralis U1_48)
ACGGCGTCGAACACACGACCCTGAACAAGCCAGCCGAATGTACCACAGCG GAGAGAGCCGGAGCACGACAACTGAACGACGTAGTATTCCTCGCTGTGTC TTTACTTCATTATGCGGAAATCCGGCGTGAAGTTCGGTTTGATAGGAACA GCTTCCTCGCTGAAGAAGGGGGGGGCTCCAGCGAACAAGGGAAGACCGAT CGGCTCTAAGCCCGCACCGCGCCGCCGCCCGCCCGGAGCAACGTCCGTGT TTGACGCCGACTCGGACGACGAGGAGGGGGGACCGAAGGCCGACCTAAAC GGAGTGGCGGCAGTGAACAAGAGGCTAGCAGCGATCTCGGCCAAGCAGGA GAAGGCAGCGAAAAAGGAGTACGAGGACGCTCTCGAGGCCGACCCCTCCG TGTTCGACTATGATCGAGTTTACGACGGAATGAAGGAAAGGTGTGCCCTC CGCCGCTGTTGTTTTACCCCACTCTCACGGATACCGCCGTCTGCCGTACC TACCAAGCGCTGTTACCCCGCCCGTGTAATAAATGATTGCAAAATGATCA TCCCTTGGCTTCAGCGACATTCTTCGTTTCTTTTAAGGGGTTGGGAACGT AGTGCTGTATTTCCTACATACCTATCATAGGTCCGAGATCAGACGTCGAT GGGCCGTGAGTAGTGCTGCTGTTTTCCATGTGACTCTTTAGTCAGTATTC GTCGATACATCAGCTTTTTCGCTGCCATGATCCCTCATTGTTCCGCAGCC GCGAGTCGAAGGCGGTGGCCACAACGGTTGCGCACGAAAAGGAGAAGAGA CAACCCAAGTACATCGGCAACCTCCTGAAGCAAGCCAAGATGCGGGCGGT CGAGTCGGACCGCATCTTCGATAGGAAGCTGCAGAAAGAGCGAGAGGAGC AGGATAAGGCAAGGACGGACGGGGTGTCTCTGGACGCTGGTGCTGCGGTA TTGCAGCAGTATACAGCAGTAGCTGTCTTTGAATTTTAGATTTTTCACCA TCTTCCGTTTACCTTAAGCCTTGCGGCACCATCATCGGCTCCTACAATTA GTCGTTCCCTGTTCCTTATTTAATTCCGCCGCTAAATTTACGCTGCTGCT GCTGCCGCTGCCGCTGTTCGAACGAAGCACCTCACCGGCCGTATCGTGTC TCGGTGAGCTTGGAACAGCCACGCCGCCCTTTCTGATTGTTGCACACACT TTCCACACAATCGTGTTTCACGATGCTCGTTGCTGCCTATAGTTGGAAGG CGAAGCGACGATGAAATTCGTCACGTCGGCGTACAAGAAGAAGCTCATGG AGCAGAAGAAGTGGGAACTACAGCAGCAGCTCGAGGACGAGAGGGAGCAG CGGAATGATGTCACCAAGACGGGTATGAGCGGGTAAGTACAGATAACACC GGCATCTTTTGCGAACAGCATCGAGTCGGGATGGCACCCCGGCTGAATCG ATTTGTCTCTTTCAACGCCAGGGAAGGCGGGGTCGAGGGGGGCTGATTGG GAAGTTTTTTTTTTTTTTGCGGTGTTGCCGGATGCCAGGACTGCACCTCT CCCGAAGTGTACCGGCTCAGCTAAACCAAATTAGTAGTTCTTGCAAGTAC CCCGTTCACGCCCCCCTGAAGTCTACGTCCGCTGAAACCTTCGCTACCTT TTCCTCTCCCCCTTATATTTCCAATGAGGAACATGCAATGAACCTTTCCT AAGCGGCGGCAACCTGCTTTCCCCTTCCCTCTGTTTAACCCTCACGATAA CCTGACCCTGACTTGTTATCTACCCCCGATTGTATGGTTTCTCTCTGTCT CTCTTTTCACCTTCTCTCTTTGTTTTTCGCCGCGCGTCACAGCTTTTACT CGAACCTCATCACAAAGAACATCGCCATGGGCGGCGACGTCGAGAAATCC GCCAACAGCGCCTTCACCGCCGGCTCCAAACGGCACGCGGCCACTGCCGA CTACGAAATGCAGGACGGATCTGCCAAGGCGAAAACACCATATGTTCGAA GAAAAAGCAGCGATGATGATGACGGTGACGATGACGACGACCAAGATGCA GCCGGCACCGACATGCGTGCGGAGCGTGGCGATAAAAGCAGCCCCGAGAA AGCGCACGAACAGGAAACCGATACGGGCCCGACGGCCAGGATGGTCGACT CTCGCGCCGCAGAAGCAAAGAGAAGAGAGGCTGTTCCCATGGGGACGAGA GGGCACGATGAGAGCACAGCCGTCCGGAGACGAGAAGAACGAGATGAGGA TGATGCTCCAGGCGACCCCGAGGGTTCGGCAAAACGGGCACGCCTTGGGG AAGAAGGGGGGGCAGGGGCATCCAGTGGTGCCTCGTCAGAGGTCGCGGTC ACCGGTGGCGGGGTGCAGCAGCCGCAGGAGGCAACCGCTGAGGAAAAGAG CGCCGTGGAAGAGCTGGAGAAGGTTAAGAAGGCCGCGGCGGCAAAAGTGA AGAAGGAGGCGGCGGTCAAGGCGGCTCGGGAGCGTTTCCTCGCGAGAAAG AAGGCTGCGTGACGTTGACTTCGGGACGGTGTACATGCTTTGTCTATATT TTTTGTTTCGCATATGGTCAACTGTAAAGCTTTTCTTCGTGGTGTGTGTG CGGATGTTGTAATTTGGATGTGTAACGAAGTTGGATTATGGGGGCATGTC AGGTCTTAGACAGGGCGGTAACTGCTGGACGCCGCGTTTGGTTGACGGTG CGGCGGGCGGAGTCAAAAATGTAAATTTCGTGCCTCTTGGATTTTGACGA TTCCTTTAACCCTGCCGTTTGTGGCCCCGATGCCGTGCAACATGTGCACA GATTCCCGTTTTTGTTTTGTATTTTATGGCCTCTGTTGGCTACAGAGCGC ACCGACGAAGGACGAACCAACTGCGCCAAGGGCATTGCGGCTGCTGGGCA CCACCAGCGCTGTTCAGGGTCAAATAAACGTCCCGAACTGCTTTGTCACT CTTTGGCGTGGGCACGATCATTCATTTCGTAATATATCGAGCAACTCAAT TTAACGTTGAATGTTTGAAGGGCCTAGACCGCTCAGGGCCGTGCGCAAAA AACGTGCCATTTGCGGACAAGCCGCGAAACATCATAGGTATCAAAAGAAA AAAGTCATGATACGTCACGCAGCAACACTGGTTGAAATCACCAAGTCAAG CCGGCCACAGGGAAGAAAATGATCCTCATGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig180:262030..265210-

>mRNA_P-littoralis_Contig180.73.3 ID=mRNA_P-littoralis_Contig180.73.3|Name=mRNA_P-littoralis_Contig180.73.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1299bp|location=Sequence derived from alignment at P-littoralis_Contig180:262030..265210- (Pylaiella littoralis U1_48)
ATGCGGAAATCCGGCGTGAAGTTCGGTTTGATAGGAACAGCTTCCTCGCT
GAAGAAGGGGGGGGCTCCAGCGAACAAGGGAAGACCGATCGGCTCTAAGC
CCGCACCGCGCCGCCGCCCGCCCGGAGCAACGTCCGTGTTTGACGCCGAC
TCGGACGACGAGGAGGGGGGACCGAAGGCCGACCTAAACGGAGTGGCGGC
AGTGAACAAGAGGCTAGCAGCGATCTCGGCCAAGCAGGAGAAGGCAGCGA
AAAAGGAGTACGAGGACGCTCTCGAGGCCGACCCCTCCGTGTTCGACTAT
GATCGAGTTTACGACGGAATGAAGGAAAGCCGCGAGTCGAAGGCGGTGGC
CACAACGGTTGCGCACGAAAAGGAGAAGAGACAACCCAAGTACATCGGCA
ACCTCCTGAAGCAAGCCAAGATGCGGGCGGTCGAGTCGGACCGCATCTTC
GATAGGAAGCTGCAGAAAGAGCGAGAGGAGCAGGATAAGTTGGAAGGCGA
AGCGACGATGAAATTCGTCACGTCGGCGTACAAGAAGAAGCTCATGGAGC
AGAAGAAGTGGGAACTACAGCAGCAGCTCGAGGACGAGAGGGAGCAGCGG
AATGATGTCACCAAGACGGGTATGAGCGGCTTTTACTCGAACCTCATCAC
AAAGAACATCGCCATGGGCGGCGACGTCGAGAAATCCGCCAACAGCGCCT
TCACCGCCGGCTCCAAACGGCACGCGGCCACTGCCGACTACGAAATGCAG
GACGGATCTGCCAAGGCGAAAACACCATATGTTCGAAGAAAAAGCAGCGA
TGATGATGACGGTGACGATGACGACGACCAAGATGCAGCCGGCACCGACA
TGCGTGCGGAGCGTGGCGATAAAAGCAGCCCCGAGAAAGCGCACGAACAG
GAAACCGATACGGGCCCGACGGCCAGGATGGTCGACTCTCGCGCCGCAGA
AGCAAAGAGAAGAGAGGCTGTTCCCATGGGGACGAGAGGGCACGATGAGA
GCACAGCCGTCCGGAGACGAGAAGAACGAGATGAGGATGATGCTCCAGGC
GACCCCGAGGGTTCGGCAAAACGGGCACGCCTTGGGGAAGAAGGGGGGGC
AGGGGCATCCAGTGGTGCCTCGTCAGAGGTCGCGGTCACCGGTGGCGGGG
TGCAGCAGCCGCAGGAGGCAACCGCTGAGGAAAAGAGCGCCGTGGAAGAG
CTGGAGAAGGTTAAGAAGGCCGCGGCGGCAAAAGTGAAGAAGGAGGCGGC
GGTCAAGGCGGCTCGGGAGCGTTTCCTCGCGAGAAAGAAGGCTGCGTGA
back to top