mRNA_P-littoralis_Contig180.64.6 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig180.64.6 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 699 bits (1805), Expect = 1.010e-220 Identity = 552/1188 (46.46%), Postives = 641/1188 (53.96%), Query Frame = 2
Query: 599 SMTDPTLAAVLRFARSDGDATVRCSAFDSIAEYIGQMEMLSFDNH---GDDCSSERDNYVPSDVAVCERSNIPTEEAGYKGSSSSGGDNSSVNLETGMGA-----MDIAPCNDSTPDHAGGETLVSAGKSR--ATPARPPAPSRRQVIVGRASRRQRGDGERPTTTTQGTSDRPSQREKGEGRA--------------IGPWSVGGALLSSLSASADALSTDGSKAVRAKALACSLRILEVHGNTAVRSGGSFDGTTG----VVEVPADSDCVAKTLCVVAKSGWGALEALAADSGGAA--QASPGSVGGG-RNRKAADAARDLLTLPCVNAVPIELVMCYERCRVAPGAGEGAAAAAEEAKRAVRQVTQARFCGDIGTLLRAVSDVMAADERR-GRGSGDPNESAAGTNECASFSLSEVLCEVLAGVDGKVIAPLLRQALQAYAAHAAGDDVVQRHRKHELAVSAPVLLRTLALLAEANGNTKHAGEEKQSS-----GSNRA-------------DEEQIQILAGSQRLFWRSLERRMEDIERDS-DEQAGFGAVHNCAPDAGLQESLVPCSSVGGGSXXXXXXXGRRDQRAMTVSDAVLELSELLHIYQLLATRSLISPENSLALEVLVYPAALTKRRLIRPAVALALALDEPHRVLLSSLAILQDAAFSRSSTDVGRACDYVRLIGVLATENASLIAAHVREQHEDAKDKKTRRNSRQEEEEGHAEDGREDYMAGVSNREAMEWDIRRLREASVTCDGMLSCYTPFLLAIVRGRIADSAAAKEQSRRQEGMLEESSFPPGGTATGINSCSGNGATRDGDESSSIDGGGDGXXXXXXXXXXXXXXXXXXXPKNAAGQVDEGNGGANIVRDEGCNLPGVVVPXXXXXXXXXXXXXSLP-SSCPGALCAEALRALSEYAVLSPGLVAAEVLPLAEELAMDTLEDAQIRSAAVGVLTRRELATDETAAHVCRLLKDENPRIRREVLGRLGHLMKESRIQTVHLSRLALLLVDGCEKVCRTARQVFFDYLQPRPDEVNRCVFETYFTLDAEEPANRNILQNLVAVAREAAPGQGLEPLGGALVRKAAETGSSEAAFFLSLVPPTVNSLEAAEVALRRGQLAQAPAETVSLVAAHFSKGAQRRGSGIPSAGSSSSAWGRGDGSAPSKAQALEMAARIGSLNSRRRAAGRPS 4006
++ DP LAAVLR +RSDGDATVR SAFDS+A++IG++E + DD SS+ D+ PS + + T E S+ G + G A M+IAP D +HAG + R AT P A ++ + G S RQ G+G+ P T+ Q T+ + + G A GPW+VGGAL SSLSA+A+AL TDGSKAVRAKALAC LRILEVHG T G S + TTG P S V L VAK ALE LA D+ G QAS S GGG R+RKAAD AR LL LPC+ + P++LVMCY RCRVAPG GEG A A EAKRA+R++ QA FC DI L +AVS +MAADERR G G N A T E ASF LSEVLCEVLAGVD IA LL AL+AYAA D++ R R A SAPVLLRTLALLAEA G+ K+ +E+ + SNR +EEQ++ LAGSQ LFWR LE+RMEDIERD E+ G V + V GG XXXXXX SD + ELSELL ++QLLATRSL+SPEN ALE LV+PAAL++RR ACDYVRLIGVLA ENAS IAAH+REQ+ R SR EEE AE+G +DYMAGVSNREAM + A+E C G GD + + Q D G A + R++ G SLP SSCP ALC EAL ALSEYAVLS GL AAEVLPLAE LA DTLE Q+R+AAVGVLTRRELATDE AAH C LL+DENP +RREVL RLG L+KES RC+FETYFTLDAEE R +LQ LVAVAREAAPGQGLE LG ALVRK AE G SEAAFFLSLVPPTVNS EAAEVA RRGQLAQ+P T+SLVAAHFS+GAQR G+G A ++S A GRG G+ SKAQALEMAARIGSL SR +A R S
Sbjct: 250 TILDPALAAVLRLSRSDGDATVRSSAFDSVAKFIGEVESTLYRQRLDDDDDTSSDLDDGTPSGDVLAHQQPRNTAETLTDDDSTGSGAGGGRGVTHGARATETMEMEIAPRGDGAANHAGDADACPLSEKRPSATARTPAACTQMGAMHGATSGRQSGEGDTPVTSRQHTTGHAHRETREAGAASEGNRGQRRKAKVSAGPWAVGGALQSSLSAAAEALLTDGSKAVRAKALACLLRILEVHGGTIKPRGASCENTTGDKAGSAAAPGVSSRVETILSAVAKGALAALEPLAGDNTGGPTIQASLNSTGGGGRHRKAADTARALLVLPCIESSPVDLVMCYARCRVAPGVGEGEAVGATEAKRALREIAQATFCADIRKLWKAVSVIMAADERRQGLEDGSANIDFADTTEGASFPLSEVLCEVLAGVDSGAIASLLCDALEAYAAE---DEIAPRDRDGA-AASAPVLLRTLALLAEATGHAKNGVDERNGARQPGGSSNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQLRRRGVGVSVEQYHGGXXXXXXXRS-------AASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR----------------------------------------ACDYVRLIGVLARENASFIAAHIREQYS------ARCLSRPGEEES-AENGEDDYMAGVSNREAM---------------------------------GAATTAEEGEXXXXXXXXXXXXXXXXXXXXDGDCGGARVGSRGDAQDEM--------------------------QYRMAQQDGGKVEATVFREDVGQDRGATA----------AAGVSLPASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCLRREVLVRLGQLIKES-----------------------------------------RCLFETYFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGSALVRKVAEAGDSEAAFFLSLVPPTVNSFEAAEVAHRRGQLAQSPHGTISLVAAHFSRGAQR-GAGSSLATTASIA-GRGGGAPLSKAQALEMAARIGSLTSRVASASRSS 1267
BLAST of mRNA_P-littoralis_Contig180.64.6 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 389 bits (1000), Expect = 2.060e-116 Identity = 265/468 (56.62%), Postives = 300/468 (64.10%), Query Frame = 2
Query: 2729 MLSCYTPFLLAIVRGRIADSAAAKEQSRRQEGML--EESSFPPGGTATGINSCSGNGATRDGD-ESSSIDGGGDGXXXXXXXXXXXXXXXXXXXPKNAAGQVDEGNGGANIVRDEGCNLPGVVVPXXXXXXXXXXXXXSLP-SSCPGALCAEALRALSEYAVLSPGLVAAEVLPLAEELAMDTLEDAQIRSAAVGVLTRRELATDETAAHVCRLLKDENPRIRREVLGRLGHLMKESRIQTVHLSRLALLLVDGCEKVCRTARQVFFDYLQPRPDEVNRCVFETYFTLDAEEPANRNILQNLVAVAREAAPGQGLEPLGGALVRKAAETGSSEAAFFLSLVPPTVNSLEAAEVALRRGQLAQAPAETVSLVAAHFSKGAQRRGSGIPSAGSSSSAWGRGDGSAPSKAQALEMAARIGSLNSRRRAAG------RPSTFLRAAAEGKKTTPAARPRRGKKAEHVGVQSG 4102
MLSCYTPFLLAIVR R+AD+AAA+ + + E + G DGD + + + GGD Q D G A R +G G SLP SSCP ALC EALRALSEYAVLS GL AAEVLPLAE LA DTLE Q+R+AAVGVLTRRELATDE AAH C LL+DENP +RREVL RLG LMKESRI+T HLSR ALLLVD E V + A++VF D+LQPRPD V RC+FET+FTLDAEE R +LQ LVAVAREAAPGQGLE LGGALVRKAAETG SEAAFFLSLVPPTVNS EAAEVALRRGQLAQ+P T+ LVA HFS+GAQR G+G A ++S A GRG G+ SKAQALEMAA+IGSL SR +A + + + A T PAARPRRGKK + G
Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGSGGDAHDETRLHVV----------------QQDGGKVEATDFRKDGGQGRGATT----------AASVSLPASSCPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCVRREVLVRLGQLMKESRIKTGHLSRFALLLVDVSEGVRQAAQKVFIDHLQPRPDTVCRCLFETFFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAEVALRRGQLAQSPHATIFLVATHFSRGAQR-GAGSSLAITASVA-GRGGGAPLSKAQALEMAAQIGSLASRGASASIFSRRAKVAAAIATGAAAMNTVPAARPRRGKKTDQAAATQG 440
BLAST of mRNA_P-littoralis_Contig180.64.6 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 362 bits (929), Expect = 8.120e-104 Identity = 321/782 (41.05%), Postives = 386/782 (49.36%), Query Frame = 2
Query: 599 SMTDPTLAAVLRFARSDGDATVRCSAFDSIAEYIGQMEMLSFDNH---GDDCSSERDNYVPSDVAVCERSNIPTEEAGYKGSSSSGGDNSSVNLETGMGA-----MDIAPCNDSTPDHAGGETLVSAGKS--RATPARPPAPSRRQVIVGRASRRQRGDGERPTTTTQGTSDR----------PSQREKGEGR----AIGPWSVGGALLSSLSASADALSTDGSKAVRAKALACSLRILEVHGNTAVRSGGSFDGTTG----VVEVPADSDCVAKTL----------------------------------CV----------------------------------------------------VAKSGWGALEALAADS--GGAAQASPGSVGGG-RNRKAADAARDLLTLPCVNAVPIELVMCYERCRVAPGAGEGAAAAAEEAKRAVRQVTQARFCGDIGTLLRAVSDVMAADERR-GRGSGDPNESAAGTNECASFSLSEVLCEVLAGVDGKVIAPLLRQALQAYAAHAAGDDVVQRHRKHELAVSAPVLLRTLALLAEANGNTKHAGEEKQSSGSNRADEEQIQILAGSQRLFWRSLERRMEDIERDSD-EQAGFGAVHNCAPDAGLQESLVPCSSVGGGSXXXXXXXGRRDQRAMTVSDAVLELSELLHIYQLLATRSLISPENSLALEVLVYPAALTKRRLIRPAVALALALDEPHRVLLSSLAILQDAAFSRSSTDVGRACDYVRLIGVLATENASLIAAHVREQHEDAKDKK 2587
++ DP LAA+LR ARSDGDATVR SAFDSIA++IGQM + DD SS+ D+ PS + + + T EA + G A M+IAP DHAG + AT P A ++ + G S RQ G P + Q TSDR PS+ +G+ R + GPW++GGAL SSLSA+A+AL TDGSKAVRAKALACSL ILEVHG+T G + T G P S V +TL C+ VAK ALEALA D+ G QAS S GGG R+RKAAD AR LL LPCV P+ELVMCY RCRVA G GEG A A EAKRA+R++ QA F DI LL+AVS +MAADERR G G N + A T E ASFSLSEVL EVLAGVD IA LL AL+AYAA D++ R R GE ++ S N +EEQ++ LAGSQ LFWR LE+RMEDIERD E++G+ + + GG XXXXXX DAV ELSELL I+QLLAT SL+S +NS ALE LV+PAAL++RRLI + S+ I AF RACDYVRLIGVLA ENAS IAAHVREQ+ K+++
Sbjct: 50 TILDPALAALLRLARSDGDATVRSSAFDSIAKFIGQMGTTLYRQRLHDNDDTSSDLDDGTPSGDVLAHQQSRSTAEALTDXXXXXXXXXXXRGVTHGARATETMDMEIAPSERGAADHAGDADACPLSEKIPSATARTPMARTQMGAMHGATSGRQSRQGRTPVISPQHTSDRAHRATRGAGAPSEGNRGQRREAKVSAGPWTMGGALQSSLSAAAEALLTDGSKAVRAKALACSLLILEVHGDTIQPRGACCENTAGDEAGSAAGPGVSSRVERTLSTASSRCGGILILMAFLRSQRRLPRSSVDFASRPCMSGIAILCPSLRKRDLRQRCFPYTRGSFTWVHLSKSLVVQEPFLPLSTLCRVQVAKGALLALEALAGDNHGGSTTQASLNSTGGGGRHRKAADTARALLILPCVEPSPVELVMCYARCRVASGVGEGEAVGATEAKRALREIAQATFSADIRKLLKAVSVIMAADERRQGLEDGSANINFADTTEGASFSLSEVLGEVLAGVDSGAIASLLCDALEAYAAE---DEIAPRDRD---------------------------GETRKYSNYNSDEEEQLRTLAGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQLRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLI----------------VSRSIDIHNSFAFLVLVWG-SRACDYVRLIGVLARENASFIAAHVREQYRCEKERR 784 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.64.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig180.64.6 >prot_P-littoralis_Contig180.64.6 ID=prot_P-littoralis_Contig180.64.6|Name=mRNA_P-littoralis_Contig180.64.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1277bp MTDPTLAAVLRFARSDGDATVRCSAFDSIAEYIGQMEMLSFDNHGDDCSSback to top mRNA from alignment at P-littoralis_Contig180:224222..238051- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig180.64.6 ID=mRNA_P-littoralis_Contig180.64.6|Name=mRNA_P-littoralis_Contig180.64.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=13830bp|location=Sequence derived from alignment at P-littoralis_Contig180:224222..238051- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig180:224222..238051- >mRNA_P-littoralis_Contig180.64.6 ID=mRNA_P-littoralis_Contig180.64.6|Name=mRNA_P-littoralis_Contig180.64.6|organism=Pylaiella littoralis U1_48|type=CDS|length=3831bp|location=Sequence derived from alignment at P-littoralis_Contig180:224222..238051- (Pylaiella littoralis U1_48)back to top |