mRNA_P-littoralis_Contig180.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.8.1
Unique NamemRNA_P-littoralis_Contig180.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.030e-36
Identity = 67/122 (54.92%), Postives = 84/122 (68.85%), Query Frame = 2 
Query:  404 LIMPRVAACGRSVHGKA-AAAGGLRLCYACDRPGSR-----KWKHMGDSEWWANLGAWSSREGKGWPHERDLQAHKLEVGECICSRADCVAGMYGTFKTRREKEERGSTDRMEIGWSSPMVR 751
            ++  R A+CG+ VHGK  AAAG LR C+ACDRPGSR      W+H+ DSE+WA LG WS+  G+GW HERDL    L+ GECIC RADCV  +Y  +K RR++EE+G+   M IG  SPM R
Sbjct:    1 MVRQRRASCGKVVHGKEPAAAGELRRCFACDRPGSRDGCSTNWQHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122
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BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.110e-28
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 2 
Query:  419 VAACGRSVHGKAAAAGGLRLCYACDRPGSR-----KWKHMGDSEWWANLGAWSSREGKGWPHERDLQAHKLEVGECICSRADCVAGM 664
            + +CGR+VHGK A  GGL LC+AC RPGSR     +WKH+G + +WA +G WS+  G+ WPHERDLQ   L+VGECIC+R DC  G+
Sbjct:    6 LGSCGRAVHGKEAPGGGLGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWSAMVGQEWPHERDLQGDPLKVGECICTRPDCAGGI 92
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BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.750e-23
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  976 PRLVVTSPPYKHAFAILKQALRIGRKGVAFKLRLNFLEPTKGQGRWFTENPPDMVVVLPRAVYRGRTCCAPEAWIVWKKVHGQAEITRPTFCF 1254
            P  +VTSPPY +AF+IL +AL + R GVAFKLRL+FLEPTK +G+W  +NPP  VVVLPRA Y GR C + EAW +W       E     F F
Sbjct:   83 PDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFF 175
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BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.450e-14
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1 
Query: 1054 GVAFKLRLNFLEPTKGQGRWFTENPPDMVVVLPRAVYRGRTCCAPEAWIVWK 1209
            GVAFKLRL FL P K +GRW  +NPPD +V+LPRA YR R C + E W VW+
Sbjct:    2 GVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWE 53
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BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.050e-11
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = -2 
Query:  975 GSTTTMSGGFSVNHRPWPLVGSRKLSLSLNATPLRPIRSACFKMAKACLYGGLVTTSLG 1151
            G TT ++    ++H P  LVGSRK+SLSLNATP RPI  A FK+AKACLYGGLVTT  G
Sbjct:  160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSG 218
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BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 70.1 bits (170), Expect = 1.970e-10
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:  985 VVTSPPYKHAFAILKQALRIGRKGVAFKLRLNFLEPTKGQGRWFTENPPDMVVVLPRAVYRGR------TCCAPEAWIVWKKVHGQAEI 1233
            VVT+PP+  A  IL +A      GVAF LRL++LEP K +G+W  E+PP ++V LPR  + G       TC    AW++WKK +   ++
Sbjct:   88 VVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSCTC----AWMIWKKGYSSEDL 171
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BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B)

HSP 1 Score: 55.8 bits (133), Expect = 4.450e-5
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  985 VVTSPPYKHAFAILKQALRIGRKGVAFKLRLNFLEPTKGQGRWFTENPPDMVVVL 1149
            V+T+PP+ HA+  L+QA+RI R+GVAF +RL +LE        +T+ PP +V V 
Sbjct:  104 VITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLESKGRYNSLWTQTPPSVVAVF 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JGM7_9PHAE1.030e-3654.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE39_9PHAE7.110e-2856.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3H5_9PHAE4.750e-2354.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE3.450e-1461.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE2.050e-1164.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO1.970e-1041.57Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
UPI000E0E050B4.450e-545.45SAM-dependent DNA methyltransferase n=2 Tax=Microv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:48045..50084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1434
Hectar predicted targeting categoryother localisation
Exons3
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789869.2283392-UTR-P-littoralis_Contig180:48044..484871680789869.2283392-UTR-P-littoralis_Contig180:48044..48487Pylaiella littoralis U1_48UTRP-littoralis_Contig180 48045..48487 -
1680789869.2757604-UTR-P-littoralis_Contig180:49675..500841680789869.2757604-UTR-P-littoralis_Contig180:49675..50084Pylaiella littoralis U1_48UTRP-littoralis_Contig180 49676..50084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789869.240003-CDS-P-littoralis_Contig180:48487..485751680789869.240003-CDS-P-littoralis_Contig180:48487..48575Pylaiella littoralis U1_48CDSP-littoralis_Contig180 48488..48575 -
1680789869.2553077-CDS-P-littoralis_Contig180:48824..489551680789869.2553077-CDS-P-littoralis_Contig180:48824..48955Pylaiella littoralis U1_48CDSP-littoralis_Contig180 48825..48955 -
1680789869.2650058-CDS-P-littoralis_Contig180:49312..496751680789869.2650058-CDS-P-littoralis_Contig180:49312..49675Pylaiella littoralis U1_48CDSP-littoralis_Contig180 49313..49675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.8.1prot_P-littoralis_Contig180.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 48488..49675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.8.1

>prot_P-littoralis_Contig180.8.1 ID=prot_P-littoralis_Contig180.8.1|Name=mRNA_P-littoralis_Contig180.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
MPRVAACGRSVHGKAAAAGGLRLCYACDRPGSRKWKHMGDSEWWANLGAW
SSREGKGWPHERDLQAHKLEVGECICSRADCVAGMYGTFKTRREKEERGS
TDRMEIGWSSPMVRYPSTSFQVRALLEHVELDGSILGCCGGETDVLYNVL
PAHGLPVATNDFNGGLRAGSHMDATTVEFAEAFLEDARRPDWS*
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mRNA from alignment at P-littoralis_Contig180:48045..50084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.8.1 ID=mRNA_P-littoralis_Contig180.8.1|Name=mRNA_P-littoralis_Contig180.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2040bp|location=Sequence derived from alignment at P-littoralis_Contig180:48045..50084- (Pylaiella littoralis U1_48)
GTGCAGGAGGGTGAGTATGCTTGATGTTCTGGCCGTAGAGCCCACCTGCG
CGACGTTGGACTTCGTAGCTTTCTCGGATATTGATCTCCTACTCATACTG
CAGCGGCTGGTGCAAGTTTCAGCCTTTAAATCGCTTTATCCGCGATGGTA
GGCAAACCGAAACACACAGGCCTTTCAACAGAGCCTGTACACGCGGGTAG
ACAAGATGCTGCTTGCATCAGCACCTCGGTGGTTGGTTCGAGCCGCCTAC
AACTACTGAGAAGGGGAGGGATGCATAGCTGAGGTGTTCGGCTTGCCTCA
GCGAAGAAGAAGTACTCTGATTCCGGAGGTATTGACGGAGATATCGGCGA
GTCGGCCAGCAGCTCCAAAGCGCCAGATTCGGCGGTTTCGACGGCAGGAT
CTTCTAATCATGCCGCGTGTAGCTGCGTGTGGCCGATCAGTTCATGGCAA
AGCAGCAGCAGCAGGGGGGCTTAGACTGTGCTACGCCTGTGACCGTCCTG
GGTCGAGGAAATGGAAGCACATGGGGGACTCCGAGTGGTGGGCGAACCTG
GGTGCTTGGTCTTCGAGAGAAGGGAAAGGGTGGCCGCACGAGCGCGATCT
TCAGGCACACAAGTTGGAGGTCGGTGAATGCATATGCAGCCGGGCTGACT
GCGTAGCCGGCATGTACGGCACGTTCAAGACGCGCCGGGAGAAGGAAGAG
AGAGGGAGTACGGACCGAATGGAAATCGGTTGGTCCTCACCAATGGTCCG
GTATCCCTCTACAAGTTTTCAGGTAGGATTCGATCAATACACTTTGACAG
TTCCAGGGAGTCGTGGATACGTTTTGGTCTACCCTTGAATCTGCCAACCC
GTCGACCGCTCCCCGAGTCTTATAAAAACCCGGTATAAATATACGTGGCG
GAGCGTCCATCGCATAGAATGTTTGGACGTTGGGTAAGTTATATGCGCCT
TGCTGCCCTTCAAGGAGTAGGGTGATAGCGTGGGCACCATCGCTCGGGCA
AAACTCACGTTGAAAGGCTCCGGTGACAAAATGTAACTAGAACTTATCTA
CAGCAGTAGTGCCAATTCGGTCGCGTGCCGTTCACCCAAAGTTTAAACTC
CAAGTACTTATTTGTGCTATGATATGTAGGTGCGGGCTCTTCTGGAGCAC
GTGGAGCTGGATGGCTCTATTCTGGGTTGCTGTGGTGGGGAAACAGACGT
GCTCTACAATGTGCTGCCAGCACACGGTTTGCCTGTTGCAACAAACGACT
TCAATGGCGGGTACGTGTCCGTTAGTCCGGTGTTGGCGCTTCCGTGCATG
GCGGGATAGATGTGCGTGAACACAAAAAAATGAGGGGAAAAGTTAGCTCC
TTTTGTACTATGTGAGAGGAAAAACACCGATAAAAACTCAGGAGTATTCC
TCAGGAATACTATACGTAAGGAAAACAGGCGTCTACCGTGTGCCTTTTGT
TATTTTTAGACGTCAACCATGTACCTCGCCTTTGTTTTTACTGGCCTATC
TGCCGTCAGGTTGAGGGCGGGCAGCCACATGGACGCCACGACGGTCGAAT
TTGCCGAGGCGTTCCTCGAGGACGCACGTCGCCCAGACTGGTCGTGACAA
GCCCGCCGTACAAGCATGCCTTTGCCATTTTGAAGCAGGCGCTGCGGATT
GGACGCAAGGGAGTGGCGTTCAAGCTGAGGCTCAATTTCCTTGAGCCCAC
CAAAGGCCAGGGCCGGTGGTTTACAGAGAACCCGCCGGACATGGTCGTAG
TGCTCCCGCGCGCTGTATATCGCGGTAGGACATGCTGCGCTCCGGAAGCG
TGGATAGTGTGGAAAAAGGTCCATGGCCAGGCAGAAATCACCAGGCCTAC
TTTTTGCTTTGCCGTGTCTACGTAGGGGCGAAGGAGTTGACATGAAGGTG
GTATTGCACCCTTTGGCAAGCGTAAAATTGCGTTAACCCGCCGTGCGGGG
CGATTATTTGGTCAACTCAAAACTTCCTGATATTTTTTTTTGGTAGTATT
TTCTAAGGCGCCCCTGCTGCCTTCCTTAAATCAACGTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig180:48045..50084-

>mRNA_P-littoralis_Contig180.8.1 ID=mRNA_P-littoralis_Contig180.8.1|Name=mRNA_P-littoralis_Contig180.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig180:48045..50084- (Pylaiella littoralis U1_48)
ATGCCGCGTGTAGCTGCGTGTGGCCGATCAGTTCATGGCAAAGCAGCAGC
AGCAGGGGGGCTTAGACTGTGCTACGCCTGTGACCGTCCTGGGTCGAGGA
AATGGAAGCACATGGGGGACTCCGAGTGGTGGGCGAACCTGGGTGCTTGG
TCTTCGAGAGAAGGGAAAGGGTGGCCGCACGAGCGCGATCTTCAGGCACA
CAAGTTGGAGGTCGGTGAATGCATATGCAGCCGGGCTGACTGCGTAGCCG
GCATGTACGGCACGTTCAAGACGCGCCGGGAGAAGGAAGAGAGAGGGAGT
ACGGACCGAATGGAAATCGGTTGGTCCTCACCAATGGTCCGGTATCCCTC
TACAAGTTTTCAGGTGCGGGCTCTTCTGGAGCACGTGGAGCTGGATGGCT
CTATTCTGGGTTGCTGTGGTGGGGAAACAGACGTGCTCTACAATGTGCTG
CCAGCACACGGTTTGCCTGTTGCAACAAACGACTTCAATGGCGGGTTGAG
GGCGGGCAGCCACATGGACGCCACGACGGTCGAATTTGCCGAGGCGTTCC
TCGAGGACGCACGTCGCCCAGACTGGTCGTGA
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