mRNA_P-littoralis_Contig180.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.13.1
Unique NamemRNA_P-littoralis_Contig180.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:58699..61848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_002380.3
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789868.959404-UTR-P-littoralis_Contig180:58698..587351680789868.959404-UTR-P-littoralis_Contig180:58698..58735Pylaiella littoralis U1_48UTRP-littoralis_Contig180 58699..58735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789868.9714518-CDS-P-littoralis_Contig180:58735..587441680789868.9714518-CDS-P-littoralis_Contig180:58735..58744Pylaiella littoralis U1_48CDSP-littoralis_Contig180 58736..58744 -
1680789868.9830506-CDS-P-littoralis_Contig180:61542..618481680789868.9830506-CDS-P-littoralis_Contig180:61542..61848Pylaiella littoralis U1_48CDSP-littoralis_Contig180 61543..61848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.13.1prot_P-littoralis_Contig180.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 58736..61848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.13.1

>prot_P-littoralis_Contig180.13.1 ID=prot_P-littoralis_Contig180.13.1|Name=mRNA_P-littoralis_Contig180.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
QGKNKVKSFTPGAGAIKFAARRPGESITRSGSPVAPRRALSSGAIRPPAI
SRTRARIKTPPAAQQEGRNTRPEASPVLGRIPGVDPEVGPGSLYVRVSFP
RKAS*
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mRNA from alignment at P-littoralis_Contig180:58699..61848-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.13.1 ID=mRNA_P-littoralis_Contig180.13.1|Name=mRNA_P-littoralis_Contig180.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3150bp|location=Sequence derived from alignment at P-littoralis_Contig180:58699..61848- (Pylaiella littoralis U1_48)
CAGGGTAAAAATAAGGTTAAGTCTTTCACGCCAGGTGCAGGAGCTATCAA
ATTTGCTGCGAGGCGTCCTGGGGAAAGCATAACAAGAAGCGGGAGTCCGG
TGGCACCGAGGCGGGCGCTGTCGTCAGGGGCGATCCGTCCGCCCGCGATC
TCCAGGACGAGAGCCCGCATCAAGACGCCGCCCGCAGCACAGCAAGAGGG
AAGAAACACCAGGCCGGAAGCCAGCCCGGTACTGGGAAGGATCCCTGGAG
TAGACCCGGAGGTGGGACCGGGGAGCCTGTACGTCAGAGTGTCATTCCCC
AGAAAGGTGGGACAGCCGCAATCTATGATGTTGGTGGTTTTGGGCTTTGG
CGGCGGAGGAGCAGGTGGTTTTTAGCCAGCACCCCCACAGTAGAACAAAA
TGCGTACATCAGAGTCATGCCACGATAGGGGTTGCACTTTTTCGCCAAAT
TTTTTATCAAATATGCCCTTTTTCAATGATCCTAAAGTTGGGAGGATTCG
AAAAAAAATGAAATATATCGGTCAGGGCATGTCTGTTGGGAAATTTGAAT
TGTGGTATGCCTAGAGTGAAGAATAACGTATTTTTGGGTGCTTGCCGTTC
TTCCATGCATGAATTCTTAAAATAATTAGAAGGCTTTAAGTCTCAGAAAC
ATTAAGTGCAACCCCTATCGTGGCATGGCTCATCAGTACAAGTGCCGCGT
CTCGACAGGGAAAAGCGCGATCACGGGTATTATACATGGAGAAAGGCGAT
GCTCTAATCTGTGAATACGATTCACCTAGACGGTCAATGTGGCGGGGACA
CATGTATACCTCTTTGGGACGTGGGGGGTGGGGAAATCGAGAGTTTTTCG
CTGGCGAAGAGCTACACTCAGGAGGGAATCACTTCAGTTTTTCGGGACTC
GCAGTTCTGTCTCCGGCTATAATGACGAACCGGTGCATAGTCAGCCAGGC
AGGACCTACTTGCGAGGAGCCGGTCGTGAGGTCAGAGGCAATTAAGTCGT
GACGGCCAGTACGGACAAACCAGGTAGAAGCACCGTGGCCGCCCAGCCCC
GCTGAAAAAGTGGGGTGGGGTACGGCAACCTCATCAGGGTTACGCGCACC
TGCTTAGACCCATAAAAGGAGCGGGGGGGGGGCACAAAGAAATCACTGGA
GTCCAGGAGTCATCGCGCAACGGCTCGGCCCCACCGTAGGAGCGGGGGGG
GGCATATTAGCGTCGCTGAAGGTATCTCCAAACACGGTATCGACGGATCA
ACTCGTCTTGGAGTGTTACGCGATACTCCACGTCATAGAACATACACGTG
CGGCCTGAATAGCTGTCGATAAACGTTTACATTGATCTCGACGGGTAAAG
CTGCGGTACATTACGCGGAATCACGTCAACCTGTGAACACGCGAAGAGGT
CAGATGGCAAATGACTTCACACAACTCCCACCTTGCTGCTGCCACGGTAC
CGTGGGACTCACTGTTGGGAGTATTGTATATTCACATAGGCACGTGGCTG
CAGAGCAGACGCCCACCGACGCTAGCCGATGTGATCAATCAGTGAAGCAG
CAGACAGCACAGCAGGGCTTCTGGGCATAAATAAGATGTGGTGATGTTGT
AAACTAGCTCTTGTGGCCAAACATAGATACACCGATACTCTGATGATGGT
CCATACAGAACACGTGCAGCATCCAAGGGAATGCAAGGACACTTGACGTG
CCAGGACGATCCAGAGAGATCACAGAGAGTGAGGACCTGTCGAGAGACGA
CAACAGGAACTCGGGCCGACACTAGGCCACTGCTACCAGTAGTACACTGC
ACACGTGCGCTGTGCCTGTGTGCGGGGCCATTTGATTGATGGCCCGGAGG
CAAGGGTAGGTCAGGGCAGGGCAAGACCCGGAAGCAAGTAAATCAGAGAG
GCCAATCTGTGGGACTAAGACAGGTGCACGACACCACGCTGCCTAATATT
GCTCACCCCCCCCTGCTACATTGCGCGGAGATTGGTTTACAGCAGCAGCA
GTAGTCGATGACAGTTAGGCCGACATTGGCACTAATGCTCACTCACCACG
CGGAATGAAAACGTCGGATTCGTTTTTTGCTGGTGACAGCTGTACTCACA
GAGCCTCTACTGATGGGTGGTTTTGCACGCTCCATACTCTAGCGATGAAA
AGTTATGGGGCGCAATGGAACCTAAAAATGAAGGGGAAGCTCGAAATCGT
ACGTACGTACCGCGTTTGCTGGGGTGCGCCACTGCACGCCCTCTACTGGC
AGTGAAAATAAAGCACGAGAAAAAAAAGGGTGATGAAAGATCGTGACGAC
AAAGACATGACGCGTCTATGATTCTCTTATACTCTGTACTAATGCACACC
TTTTGCTCTACGATCACAGGAAACTAACTGTGTATATCCCATGAAACCAA
TAGGAAACGATCGTAAGAATGTAGACTAGAACATCTGGCGTTGGAAACGA
TCACTCGGAAGGTGTGACTCATTCATTCGTGACATCATTAAGGTCGATCA
TAGCGCCGTCCTACGCTTCTTAGTTTGCACGAAGCAGGCGTCGTCAAACA
GCAATAAGTTGTTGACGTGGTTGAGCCCGACATAGGCACTACCTCACCCT
TGAAAGAAGTCCTGGACGACGGTTTTGCTGGTGGTCTACAACGACGCCAC
CTGGTGCGTCATTATACGCCTTCTGCTGGCAGTGAGAAGCGATGATGGGA
GATTGCGAAGGCAGAAGTGACCTTCATCATCCTCGTCCTATCTAATTTGT
GCACTCCGACCGAGAATAAGTGGCCGGTTGCACAAATGAGCCATTGCGTG
TGGTGTGTACTATTGCAATAAAAAGTTTCGGTAACCACTGGATGTACCCG
AAGGATGACAAAAGGATAAGATACTGGATGAAAGGTCCGGGGATACCTTT
TGAACGCCCGCCCCCCCCGGTTCCCCCGCAAGGTGGCCCTGGGTTTTCTG
TGCAAAACTCGCGAATGTGAGGGGTACTTTGCATACCTCGTCCTGAACAC
GAAAAACGAGATTTTTCACTCCATTTTTTCGGTGTGGTTCATACGTGTTT
CGGCCAGACATCTTTCCGAACTTCTTCTCCATCGCCCCCGAATCTCCCCC
GAAGGCGTCGTAGACTGCGTGCAGGCCACTCTTCGGCATCCATGATCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig180:58699..61848-

>mRNA_P-littoralis_Contig180.13.1 ID=mRNA_P-littoralis_Contig180.13.1|Name=mRNA_P-littoralis_Contig180.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig180:58699..61848- (Pylaiella littoralis U1_48)
CAGGGTAAAAATAAGGTTAAGTCTTTCACGCCAGGTGCAGGAGCTATCAA
ATTTGCTGCGAGGCGTCCTGGGGAAAGCATAACAAGAAGCGGGAGTCCGG
TGGCACCGAGGCGGGCGCTGTCGTCAGGGGCGATCCGTCCGCCCGCGATC
TCCAGGACGAGAGCCCGCATCAAGACGCCGCCCGCAGCACAGCAAGAGGG
AAGAAACACCAGGCCGGAAGCCAGCCCGGTACTGGGAAGGATCCCTGGAG
TAGACCCGGAGGTGGGACCGGGGAGCCTGTACGTCAGAGTGTCATTCCCC
AGAAAGGCGTCGTAG
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