mRNA_P-littoralis_Contig18.192.7 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig18.192.7 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE) HSP 1 Score: 577 bits (1488), Expect = 3.160e-168 Identity = 429/736 (58.29%), Postives = 486/736 (66.03%), Query Frame = 2
Query: 5153 AVAAVLPSRKSGRRRTESDRARDAKEDALFIKKQRLSSLGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAG------------------------------AVPIDPTVGAKPSDLFVCRFHSGYEENLSLARLRQLGASFPFTRAGIAAVSVTDGGAPAVDASGIGFDTGNDGXXXXXXXXXXXXLNNRGPGGGRRFEGPAKPGAQRILDAMCMATLWDNKQR---------ETVITASIHDDAKLFVDEVLR----LLVTMAEHGREIGVSFWESPERKCLNECTLPLPAXXXXXXXXXXXXXXXXXXXXXXXGGAGC---VKGKXXXXXXXXXXXXXXXXXGARWPKIPGGWAEPRHCHTGPLVIWKPGPARARAIKQGDFVDHCSASVLGSSHVPPGVGMMLFDGFLHGSGILEKYAVFQPYKRRPWPEMTPEQAANMLGPTKLLPGATSRLQWKKKFIQVGKVPKTQESIYVCSSRPALLAATGTA--TSQGDASVAAFKVYFFHL----QRQYPIGTVPWTAALDDTTTDRNSNRMLPQPSPGFSAKAAPNAAGPSSPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPHFKACIVCQRPGTNSSHSGTVSSSSEXXXXXXGAPPTILKTRGPA--GALLLCSTCPASFHLSCLRPRLRVMPEGAAGGXXXXXXXXAGWSCAYCHAMGRVVGGDSDGACGAVRLMESLRQGVHGAVKV 7198
A A VLPSRKSGRRR ESDRARDAKEDA+FIKKQRL + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +G AVPID + A+P+DLFV F GYEEN+SLARLRQLGASF FTRA I A AP A+ G L N+GPGGGRRFEGPAKPGAQ+ILDAM M++LW++K R ETV++ASIHDDA+L V E LR LL +M E GREIGVSFWESPERKCLNECTLPLP XXXXXXXXXXX KGK WPKIPGGWAEPRHCH PLV+W GP+RAR +G+F+DHCSA++LGSSH P G +ML DGFLHG+G+LEK+AVFQ Y+RRPWP+++PE A + GP KL PGAT+RLQWKKKF+QVGKVP++Q+SIYVCSSR L A T T+ T D S A Q +GT PWTAALD +T N +R P +A AA NA +P XXXXXXXXXXXXXXXXXXXXXXXXXXX PHF+ACIVCQRPGT+S+ APP++L+TRGPA G LLLCSTCPA+FHLSCLRPRLR MPEG + G A WSCAYCHAMGRV+GGD+DGACGAVRLMESLRQG+HGAV+V
Sbjct: 1085 ATAVVLPSRKSGRRRFESDRARDAKEDAIFIKKQRLMNQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKDSGSKVLDHGSTAAXXXXXXXXXXXXXXGGVMGAVPIDRKIVARPTDLFV--FKEGYEENISLARLRQLGASFSFTRAPITA-------APFTSAASDG-------------------LANQGPGGGRRFEGPAKPGAQQILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRQVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLARLADEDAAXXXXXXXXXXXXXXXXXXVTKGKVGCGKQGLQKQHAGGVVPV-WPKIPGGWAEPRHCHIAPLVVWATGPSRARVRAKGEFMDHCSAAMLGSSHFPRGAELMLVDGFLHGTGVLEKHAVFQRYRRRPWPQLSPEDAVRLQGPAKLPPGATTRLQWKKKFLQVGKVPRSQQSIYVCSSREGLEAVTMTSANTRGNDGSTAGXXXXXXXXXXVCQDGAAMGTAPWTAALDSST---NEDRKTSTPEIPTTATAAANAT--HAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQGPHFRACIVCQRPGTDSN----------GVAVDEPAPPSLLQTRGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTSEGGS------AKWSCAYCHAMGRVIGGDADGACGAVRLMESLRQGMHGAVRV 1770
BLAST of mRNA_P-littoralis_Contig18.192.7 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI) HSP 1 Score: 501 bits (1289), Expect = 4.970e-155 Identity = 337/623 (54.09%), Postives = 378/623 (60.67%), Query Frame = 2
Query: 5393 GAVPIDPTVGAKPSDLFVCRFHSGYEENLSLARLRQLGASFPFTRAGIAAVSVTDGGAPAVDASGIGFDTGNDGXXXXXXXXXXXXLNNRGPGGGRRFEGPAKPGAQRILDAMCMATLWDNKQR---------ETVITASIHDDAKLFVDEVLRLLVTMAEHGREIGVSFWESPERKCLNECTLPLPAXXXXXXXXXXXXXXXXXXXXXXX----------GGAGCVKGKXXXXXXXXXXXXXXXXXGARWPKIPGGWAEPRHCHTGPLVIWKPGPARARAIKQGDFVDHCSASVLGSSHVPPGVGMMLFDGFLHGSGILEKYAVFQPYKRRPWPEMTPEQAANMLGPTKLLPGATSRLQWKKKFIQVGKVPKTQESIYVCSSRPALLAATGTATSQGDASVAAFKVYFFHLQRQYPIGTVPWTAALDDTTTDRNSNRMLPQPSPGFSAKAAPNAAGPSSPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPHFKACIVCQRPGTNSSHSGTVSSSSEXXXXXXGAPPTILKTRGPA--GALLLCSTCPASFHLSCLRPRLRVMPEGAAGGXXXXXXXXAGWSCAYCHAMGRVVGGDSDGACGAVRLMESLRQGVHGAVKV 7198
GAVPID + AKP+DLFVCRF GYEEN+SLARLRQLGASF FTRA I A + T AV L N+GPGGGRRFEGP KPGAQRILDAM M++LW++K R ETV++ASIHDDA+L V E LRLL +M E GREIGVSFWESPERKCLNECTLPLP XXXXXXXXXX G GC GK WPKIPGGWAEPRHCHT PLV+W GP+RAR +G+FVDHCSA++LGSSH PPG +ML DGFLHG+G+LEK+AVFQ Y+RRPW +++PE A + GP KL PGAT+RLQWKK G A +GT PWTAALD TT + P P XXXXXXXXXXXXXXXXXXXXXXXXXXXXX PHF+ACIVCQRPGT+S+ + APP + + RGPA G LLLCSTCPA+FHLSCLRPRLR MPEG G A WSCAYCHAMGRVVGGD+DGACGAVRLMESLRQG+HG V+V
Sbjct: 2 GAVPIDRKIVAKPTDLFVCRFKEGYEENISLARLRQLGASFSFTRAPITAAAFTS----AVSGG----------------------LANQGPGGGRRFEGPVKPGAQRILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELTVHEALRLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXXXXXXXXXLTKGRVGC--GKQGLQKQHPGGVVPV------WPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPPGAELMLMDGFLHGTGVLEKHAVFQRYRRRPWAQLSPEDAPGLQGPAKLPPGATTRLQWKK---------------------------------DGAA-----------------VGTAPWTAALDSTTNEERKTST------------------PEIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGPHFRACIVCQRPGTDSNGAAV----------DGPAPPCLPQARGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTGEGGS------AKWSCAYCHAMGRVVGGDADGACGAVRLMESLRQGMHGTVRV 506
BLAST of mRNA_P-littoralis_Contig18.192.7 vs. uniprot
Match: D8LS02_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS02_ECTSI) HSP 1 Score: 407 bits (1046), Expect = 1.340e-119 Identity = 437/700 (62.43%), Postives = 487/700 (69.57%), Query Frame = 2
Query: 320 MMDVGKQLLISIALYTPPKAGRVAAA-GDRTGEG-------------------GSIIGGSPALAQEEDVSLEERHERACRFVSVVHRYLPEAKFIVHVEVDMPQRLMREVLRASGWRCRFMVYEIVARLFDAPLKPGAMPLPTGRSPAVAAAANLKLRQAAEAKLAXXXXXXXXXXXXXXXXXXDGD-EIDLETARALIAAEVPLMEMTNPHVRGSVIAGELIGATFGKNFGRDGMWEGTVVRFLPSKNAKPSTLSYAK-TAVAGAAHHAKAKPYFATPAAAAAGFNSKTSTAARSAYSATXXXXXXTPTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVGTKRLRIKTDNYSPSSPSXXTGVVSPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVEHTXXXXXXXXXXXXAAVGDSPYTGEKTEDVSGSSPE---NSTTSPKGGKYPSLLAARKVIKGR-LKLVDKKMILRHAFWDDVWPHLLADGWMLQHVMQGARHARYYFPPGVVRGPGNRLRRDFFDSIRMLIDSLWTIPKWQSVIANVLQKHKDSEGGSYVPSSPVTPPAPKSAPTHVSCGR---RGGGIRAKLVKIAKAKQXXXXXXXXXXXXXXXXXXPTTPGKGKGTG--KPVGRP 2326
M++ +QLL SI++YTPPKA RVA G R +G G++IGG L QEE +SLEERHER CRFVSVVHRYLP AKF+VHVEVDMP+RLMREVLRASGWR RF+VYEIVA+LFDAP KPG +P PTGRSPAVAAAANLKLR+AAE KLAXXXXXXXXXXXXXXXXXX +IDLETARALIAAEVPLMEM++PHVRGSVIAGELIGATF KNFGRDGMWEGTV +FLP+KN KPS+L Y T+ AGA+ Y+ A AAA XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + T A G+S TE SG+SP+ NS++S GK+ SLLA R +K + L++ DK MILRHAFW DVWPHLL DGW + HVMQG RHARYYFP GV+RG GNRLR D+FDSI+ I+ + +PKW+ +I +L+KH+ S+G VPSSPVTPPAPKSAPTH S GR RGG A+ K XXXXX +PGK KGT K VGRP
Sbjct: 1 MVEAEQQLLFSISMYTPPKAARVARGRGRRAHDGDXXXXXXXXXXXXXXXXXXGTVIGGRVGLEQEEQLSLEERHERICRFVSVVHRYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAPTKPGVVPAPTGRSPAVAAAANLKLREAAEEKLAXXXXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLPAKNTKPSSLYYKTGTSAAGAS-------YYKAGATAAAHAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATPTGGGTLSRESFPLDA-GESYAAAAGTEVGSGASPKSDGNSSSSSSKGKF-SLLAKRMPVKAKQLRVKDKAMILRHAFWKDVWPHLLKDGWKMHHVMQGDRHARYYFPTGVIRGQGNRLRIDYFDSIKHSIECVRRMPKWKPLIEEILRKHQGSDGAYLVPSSPVTPPAPKSAPTHTSSGRKVKRGGKKSAERTKAPAXXXXXXXX--------------ASPGKSKGTTGKKSVGRP 677
BLAST of mRNA_P-littoralis_Contig18.192.7 vs. uniprot
Match: A0A6H5KPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ2_9PHAE) HSP 1 Score: 193 bits (491), Expect = 3.720e-53 Identity = 119/145 (82.07%), Postives = 130/145 (89.66%), Query Frame = 2
Query: 563 MPQRLMREVLRASGWRCRFMVYEIVARLFDAPLKPGAMPLPTGRSPAVAAAANLKLRQAAEAKLAXXXXXXXXXXXXXXXXXXDGD-EIDLETARALIAAEVPLMEMTNPHVRGSVIAGELIGATFGKNFGRDGMWEGTVVRFLP 994
MP+RLMREV+RASGWR RF+VYEIVA+LFDAP+KPG +P PTGRSPAVAAAANLKLR+AAE KLA XXXXXXXXXXXXXXX +IDLETARALIAAEVPLMEM++PHVRGSVIAGELIGATF KNFGRDGMWEGTV + P
Sbjct: 1 MPERLMREVVRASGWRTRFIVYEIVAKLFDAPIKPGVVPTPTGRSPAVAAAANLKLREAAEEKLAAKRXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKVSP 145 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.192.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig18.192.7 >prot_P-littoralis_Contig18.192.7 ID=prot_P-littoralis_Contig18.192.7|Name=mRNA_P-littoralis_Contig18.192.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2324bp MATAGGGSSRSKPPVLMDEMGEMMDVGKQLLISIALYTPPKAGRVAAAGDback to top mRNA from alignment at P-littoralis_Contig18:822712..842859+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig18.192.7 ID=mRNA_P-littoralis_Contig18.192.7|Name=mRNA_P-littoralis_Contig18.192.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=20148bp|location=Sequence derived from alignment at P-littoralis_Contig18:822712..842859+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig18:822712..842859+ >mRNA_P-littoralis_Contig18.192.7 ID=mRNA_P-littoralis_Contig18.192.7|Name=mRNA_P-littoralis_Contig18.192.7|organism=Pylaiella littoralis U1_48|type=CDS|length=6972bp|location=Sequence derived from alignment at P-littoralis_Contig18:822712..842859+ (Pylaiella littoralis U1_48)back to top |