mRNA_P-littoralis_Contig18.164.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.164.1
Unique NamemRNA_P-littoralis_Contig18.164.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.164.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.890e-23
Identity = 76/133 (57.14%), Postives = 85/133 (63.91%), Query Frame = 1 
Query: 1228 ARGGSPMPP--HPGGSTPILVGQSMA----MGMPPVGGIGVDAGGAGDMQMQGIFNPAAAGYFVTPGGQQLPMHMAAEMSAAG--------VGGGSWFPERQQQQPQHSSPVLVPWNAAGDGPEAAGAAAPSA 1584
            AR GSPMPP  H  GS PILVGQSM     MGMP   G+G+   G GDMQ+QGI+NPAAAGYFVTPG QQLPMH+AAEM AA               +P+   Q  QHSSPV VPW+ AG+G      AAPSA
Sbjct:  791 ARDGSPMPPLPHASGSPPILVGQSMPGVQQMGMP---GVGMGVAGPGDMQIQGIYNPAAAGYFVTPGAQQLPMHVAAEMVAASGXXXXXXXXXXXXXYPD---QXXQHSSPVPVPWSVAGEG------AAPSA 911
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS47_9PHAE3.890e-2357.14Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:714016..717485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1738
Hectar predicted targeting categoryother localisation
Exons5
Cds size1737
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789867.2979462-CDS-P-littoralis_Contig18:714015..7148311680789867.2979462-CDS-P-littoralis_Contig18:714015..714831Pylaiella littoralis U1_48CDSP-littoralis_Contig18 714016..714831 +
1680789867.3128026-CDS-P-littoralis_Contig18:715357..7154261680789867.3128026-CDS-P-littoralis_Contig18:715357..715426Pylaiella littoralis U1_48CDSP-littoralis_Contig18 715358..715426 +
1680789867.3257751-CDS-P-littoralis_Contig18:715666..7161461680789867.3257751-CDS-P-littoralis_Contig18:715666..716146Pylaiella littoralis U1_48CDSP-littoralis_Contig18 715667..716146 +
1680789867.3347962-CDS-P-littoralis_Contig18:716482..7166411680789867.3347962-CDS-P-littoralis_Contig18:716482..716641Pylaiella littoralis U1_48CDSP-littoralis_Contig18 716483..716641 +
1680789867.3453624-CDS-P-littoralis_Contig18:717272..7174851680789867.3453624-CDS-P-littoralis_Contig18:717272..717485Pylaiella littoralis U1_48CDSP-littoralis_Contig18 717273..717485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.164.1prot_P-littoralis_Contig18.164.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 714016..717485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.164.1

>prot_P-littoralis_Contig18.164.1 ID=prot_P-littoralis_Contig18.164.1|Name=mRNA_P-littoralis_Contig18.164.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=579bp
GTAAARTTSAAANGNSKPGEAGGSWAPATPDAGAWGTATSVNQNQNQNQN
AGGWGGGKISPGGVGDGSGRGGRGGRGRGSKTYVNSGGGMGANGGERGGG
GRDTSRGGRGGGGRGGVNAQVPRVTPAAAATPSKPSTLTANAKQWTGQPG
TAAATAAPATTSAAGAAGTAATPPATAAAAAASVASTTVPGKPLPSASAE
APAAASAGEDFSGVQVEPGFAPPARAVTGVPVILGEATVGVAGTAASALA
HLSPEQRAFFLHAQQQQLAQQVQQMQQVQLIQAHQALRNQQLQQQDEFFR
RQQQQKQGGTLQLDSGSTQQQQDEHARQQQHQQPHQQQHHSPLQQPGVHI
VSPTPPLAGGPPPQPQQNVSAGPPKIAEYHSSSTPPPPSALMPPVPNPEA
VAAAMQQQHARGGSPMPPHPGGSTPILVGQSMAMGMPPVGGIGVDAGGAG
DMQMQGIFNPAAAGYFVTPGGQQLPMHMAAEMSAAGVGGGSWFPERQQQQ
PQHSSPVLVPWNAAGDGPEAAGAAAPSAVLADDVMLPPQADSWMRAAVQQ
ELLREQMQEQAVAQQFHQQQQQQRYAAAV
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mRNA from alignment at P-littoralis_Contig18:714016..717485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.164.1 ID=mRNA_P-littoralis_Contig18.164.1|Name=mRNA_P-littoralis_Contig18.164.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3470bp|location=Sequence derived from alignment at P-littoralis_Contig18:714016..717485+ (Pylaiella littoralis U1_48)
GGAACGGCGGCGGCCCGGACAACATCGGCAGCCGCAAACGGAAACTCGAA
GCCGGGAGAAGCGGGGGGATCCTGGGCTCCGGCGACCCCGGACGCAGGGG
CATGGGGGACGGCGACCTCGGTCAATCAGAACCAGAACCAAAACCAGAAC
GCGGGAGGGTGGGGTGGAGGAAAAATTTCTCCTGGCGGAGTCGGAGACGG
CAGCGGGCGCGGTGGCAGGGGCGGCAGAGGGCGAGGCTCCAAGACTTACG
TAAATTCGGGGGGGGGGATGGGGGCCAACGGCGGTGAGCGCGGTGGCGGT
GGACGCGACACGTCGCGTGGTGGGAGAGGAGGAGGAGGACGTGGTGGCGT
TAACGCCCAGGTGCCGCGGGTGACGCCGGCGGCTGCAGCAACACCGTCAA
AGCCTTCCACGCTCACGGCGAACGCAAAGCAGTGGACCGGCCAGCCTGGC
ACCGCTGCCGCTACGGCAGCCCCCGCGACCACTTCTGCTGCAGGCGCTGC
AGGCACAGCAGCAACGCCACCCGCTACTGCTGCTGCGGCTGCTGCTTCCG
TGGCTTCCACCACCGTGCCAGGAAAGCCTTTGCCGTCGGCCTCAGCGGAG
GCGCCCGCGGCGGCGTCAGCGGGCGAAGATTTCAGCGGGGTTCAGGTTGA
GCCGGGTTTCGCTCCTCCGGCGAGGGCTGTGACGGGGGTTCCGGTAATAC
TTGGTGAGGCGACTGTCGGTGTTGCCGGTACAGCGGCTTCCGCGCTGGCG
CACTTGTCACCTGAGCAGAGGGCGTTCTTCCTTCACGCGCAGCAGCAGCA
GCTCGCACAACAAGTGGTGAGATCGACAGAGACAACAGGCTCCGAGGGGG
AGGGGGGGTCGCAGACACGCAGAGGGTTTAGTGGTTGGTCTTGTTGGCGA
TCTCGGGAGAGCAAGCAAGAGAGAAAGACGATGTGATACAAGAAATAACC
AAGGATCTATCATATGATGTAGACAAATTCGGAGGCAAGGTTGTGATGCA
AGACAACAATGATGTGTGTCACATGACGTGGAGACATTCTGCCAAGGTTG
TGACGCAAGACAACGATGACACATCATAAGATGTATAGACATTCTGCCAA
GGTTGTGATGCAAGACAACAATGATACATCACACGATGTAGAGAAATTCG
GTCGAGGATGGGATGCAAGACACCTCGGGGCGAGAGGGGGGCACGGCAAC
CCATGACGCTTTCTGTCAGCGTTTTTCGTTTTTTTCGTCTGATGACAGGA
ACCGTTGCTGTAACGGTCGTTCCGGCAACCAATTTTTCCCTCGCCCCTAC
CTCCCTCTCGGAAACCTCCACCAACTGCTTGCGAACTCCCAGCAGCAAAT
GCAGCAAGTGCAGCTGATTCAAGCCCACCAGGCGCTGAGAAATCAACAGC
TACAGCAGCAGGTGCGGTTTCTCGTGAGGTCTACAGGTAGGTCAATCCTG
TGGGTCGGTTTTTTCACGTTCCGTTGTTTCCACGCCGTTAATTCCCGGCG
CTGGCGGTTGGTCACTGGGGATTACCAGTTCGGGGTAGGTCGCGCAGAAG
GCCTCCTCTCTTTGAAGTCCCCCCACCCTTGCTTGACGTCGGGTCGGGGT
CGGATTGTGTACTGCTGAATGTTTTTTTCTATATACGTGCGTGCTTAATA
GGACGAGTTCTTCCGGAGACAGCAGCAGCAAAAGCAGGGGGGGACTTTGC
AGCTAGACAGCGGCAGTACACAGCAGCAGCAGGATGAGCACGCACGGCAG
CAACAGCACCAGCAACCGCACCAACAACAGCACCACTCGCCGCTCCAGCA
GCCGGGGGTGCATATTGTGAGCCCCACCCCTCCCCTCGCCGGCGGCCCCC
CTCCCCAACCACAGCAGAACGTGAGCGCAGGCCCCCCCAAGATCGCAGAA
TACCACAGCAGCAGCACGCCGCCCCCACCGTCCGCGCTCATGCCCCCCGT
CCCCAACCCCGAAGCGGTCGCCGCAGCGATGCAGCAGCAGCATGCGAGGG
GAGGATCGCCCATGCCACCCCACCCCGGCGGATCGACCCCTATTTTGGTG
GGGCAGAGTATGGCGATGGGAATGCCGCCGGTCGGAGGTATCGGGGTTGA
TGCGGGAGGAGCGGGAGACATGCAGATGCAGGTAGTTTGTGTGCTTTACG
GGTTTTCGATGTTGGTGTGAGTTGGCTCGATGGCGGTGACTAAAGTTGCG
GTGTCGGGTGCAATGGCCGATGTTGGCGGCAGAGCGCTAACGCCGGTTGG
GGAAGGGCGCGGTGTATTATAGCAGTAGCTCTTCTGTCGGCTGTGCGTGC
GACACGCTTTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTTGATTCGTC
TCGTCTCGTCTCGTTTCGTTTCGTTTATTTTTCTTTTTTTCTCTTGTTCG
GTTGTCCCTTCTTCACCGAGAACGGCCCTCTTTGCTTGCGCCTCCTGTTC
TGCCTCCCTTCCTCCAGGGCATCTTTAACCCCGCCGCTGCCGGCTACTTC
GTGACTCCCGGGGGACAGCAGTTGCCCATGCACATGGCCGCCGAGATGTC
CGCAGCAGGCGTCGGTGGAGGCAGCTGGTTCCCGGAGCGGCAGCAGCAAC
AACCGCAGCACTCAAGTCCGGTTCTGGTAAGAAGATATGGAGAGAGAGAG
AGAGGTGTAGAGGCAGCGGGGTAGACACAAAAGAAAAGTGCGCATGGAGT
GGCAAACCCGCAAAACTGTACGTCGAAGCTAGCGGAGAAATCAAGAGTAA
ACGCTGCTGCTGCTGCTGCTGTGTTTGCGTTTCTCATTGGACGACCATGG
TTTTTAGGAGTCCCTTTATGCCATCATCTTCTGAGCATTCACACTATGTA
CCAGAACAGCATTTGATTGTGAAGGCCATTTCCTTCCCGCTGTCAGGGCC
GTGTCCCCCGCCCTTCCTCCTGTTGTTTGTTTTTTTGCAAGCCCCGCCTC
ATGTTCTTCCTCTTTATGATATATCTCTCTCTATTTCATCTCTCTCACAC
ACACTCACACACATGCAAACACTCGGTCCAAAAAATAAAGGAGGGCGGTG
TTCCACTGAGGTTCGGGACACCCCTATAAATTGCACCAAACAGGAAAAAT
CACACGACTACCACTTTTTTCTCCCACTGTCACACTCCACACGAAATCTC
TTTTTTTTTGTTTTCTTGAACCGTGCACATCATACCACTTACGATCATAG
CACATCATTTTGCCTCTCTCTGTTTCGCCTACCTTTCCGTGAATCCTTCT
GTTCCAGGTGCCGTGGAACGCGGCGGGCGATGGGCCGGAAGCCGCGGGGG
CTGCCGCGCCGAGCGCCGTACTAGCGGACGACGTGATGCTGCCGCCTCAA
GCGGACAGCTGGATGAGAGCTGCGGTGCAGCAGGAGCTCTTGAGGGAGCA
GATGCAAGAGCAGGCGGTCGCGCAGCAGTTCCATCAGCAGCAGCAGCAGC
AGCGGTATGCGGCGGCGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:714016..717485+

>mRNA_P-littoralis_Contig18.164.1 ID=mRNA_P-littoralis_Contig18.164.1|Name=mRNA_P-littoralis_Contig18.164.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1737bp|location=Sequence derived from alignment at P-littoralis_Contig18:714016..717485+ (Pylaiella littoralis U1_48)
GGAACGGCGGCGGCCCGGACAACATCGGCAGCCGCAAACGGAAACTCGAA
GCCGGGAGAAGCGGGGGGATCCTGGGCTCCGGCGACCCCGGACGCAGGGG
CATGGGGGACGGCGACCTCGGTCAATCAGAACCAGAACCAAAACCAGAAC
GCGGGAGGGTGGGGTGGAGGAAAAATTTCTCCTGGCGGAGTCGGAGACGG
CAGCGGGCGCGGTGGCAGGGGCGGCAGAGGGCGAGGCTCCAAGACTTACG
TAAATTCGGGGGGGGGGATGGGGGCCAACGGCGGTGAGCGCGGTGGCGGT
GGACGCGACACGTCGCGTGGTGGGAGAGGAGGAGGAGGACGTGGTGGCGT
TAACGCCCAGGTGCCGCGGGTGACGCCGGCGGCTGCAGCAACACCGTCAA
AGCCTTCCACGCTCACGGCGAACGCAAAGCAGTGGACCGGCCAGCCTGGC
ACCGCTGCCGCTACGGCAGCCCCCGCGACCACTTCTGCTGCAGGCGCTGC
AGGCACAGCAGCAACGCCACCCGCTACTGCTGCTGCGGCTGCTGCTTCCG
TGGCTTCCACCACCGTGCCAGGAAAGCCTTTGCCGTCGGCCTCAGCGGAG
GCGCCCGCGGCGGCGTCAGCGGGCGAAGATTTCAGCGGGGTTCAGGTTGA
GCCGGGTTTCGCTCCTCCGGCGAGGGCTGTGACGGGGGTTCCGGTAATAC
TTGGTGAGGCGACTGTCGGTGTTGCCGGTACAGCGGCTTCCGCGCTGGCG
CACTTGTCACCTGAGCAGAGGGCGTTCTTCCTTCACGCGCAGCAGCAGCA
GCTCGCACAACAAGTGCAGCAAATGCAGCAAGTGCAGCTGATTCAAGCCC
ACCAGGCGCTGAGAAATCAACAGCTACAGCAGCAGGACGAGTTCTTCCGG
AGACAGCAGCAGCAAAAGCAGGGGGGGACTTTGCAGCTAGACAGCGGCAG
TACACAGCAGCAGCAGGATGAGCACGCACGGCAGCAACAGCACCAGCAAC
CGCACCAACAACAGCACCACTCGCCGCTCCAGCAGCCGGGGGTGCATATT
GTGAGCCCCACCCCTCCCCTCGCCGGCGGCCCCCCTCCCCAACCACAGCA
GAACGTGAGCGCAGGCCCCCCCAAGATCGCAGAATACCACAGCAGCAGCA
CGCCGCCCCCACCGTCCGCGCTCATGCCCCCCGTCCCCAACCCCGAAGCG
GTCGCCGCAGCGATGCAGCAGCAGCATGCGAGGGGAGGATCGCCCATGCC
ACCCCACCCCGGCGGATCGACCCCTATTTTGGTGGGGCAGAGTATGGCGA
TGGGAATGCCGCCGGTCGGAGGTATCGGGGTTGATGCGGGAGGAGCGGGA
GACATGCAGATGCAGGGCATCTTTAACCCCGCCGCTGCCGGCTACTTCGT
GACTCCCGGGGGACAGCAGTTGCCCATGCACATGGCCGCCGAGATGTCCG
CAGCAGGCGTCGGTGGAGGCAGCTGGTTCCCGGAGCGGCAGCAGCAACAA
CCGCAGCACTCAAGTCCGGTTCTGGTGCCGTGGAACGCGGCGGGCGATGG
GCCGGAAGCCGCGGGGGCTGCCGCGCCGAGCGCCGTACTAGCGGACGACG
TGATGCTGCCGCCTCAAGCGGACAGCTGGATGAGAGCTGCGGTGCAGCAG
GAGCTCTTGAGGGAGCAGATGCAAGAGCAGGCGGTCGCGCAGCAGTTCCA
TCAGCAGCAGCAGCAGCAGCGGTATGCGGCGGCGGTG
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