mRNA_P-littoralis_Contig18.147.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.147.1
Unique NamemRNA_P-littoralis_Contig18.147.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.147.1 vs. uniprot
Match: A0A6H5JYY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.290e-30
Identity = 55/83 (66.27%), Postives = 69/83 (83.13%), Query Frame = 3 
Query:    3 RVPADAAGAGHVNVVLWCIDNGWEYTDGVMEAAAKEGRENVIMALVERGFSCRVNVDQAAPPQVPGDNLLEMVLRELPRCDCY 251
            RVPADAAGAGHV++VLWC+DNGW Y++  ME+AAKEGR NVI ALV RGF+C+V V+QAAP  V GD+L+   LR+LPRC+ +
Sbjct:  388 RVPADAAGAGHVDLVLWCLDNGWNYSERWMESAAKEGRSNVIAALVGRGFACQVQVEQAAPCDVEGDDLMGRYLRDLPRCEWH 470
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYY2_9PHAE6.290e-3066.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:674635..675098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size464
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789866.877657-UTR-P-littoralis_Contig18:674634..6748351680789866.877657-UTR-P-littoralis_Contig18:674634..674835Pylaiella littoralis U1_48UTRP-littoralis_Contig18 674635..674835 -
1680789866.8964436-UTR-P-littoralis_Contig18:675009..6750981680789866.8964436-UTR-P-littoralis_Contig18:675009..675098Pylaiella littoralis U1_48UTRP-littoralis_Contig18 675010..675098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789866.8873894-CDS-P-littoralis_Contig18:674835..6750091680789866.8873894-CDS-P-littoralis_Contig18:674835..675009Pylaiella littoralis U1_48CDSP-littoralis_Contig18 674836..675009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.147.1prot_P-littoralis_Contig18.147.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 674836..675009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.147.1

>prot_P-littoralis_Contig18.147.1 ID=prot_P-littoralis_Contig18.147.1|Name=mRNA_P-littoralis_Contig18.147.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MEAAAKEGRENVIMALVERGFSCRVNVDQAAPPQVPGDNLLEMVLRELPR
CDCYAGL*
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mRNA from alignment at P-littoralis_Contig18:674635..675098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.147.1 ID=mRNA_P-littoralis_Contig18.147.1|Name=mRNA_P-littoralis_Contig18.147.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=464bp|location=Sequence derived from alignment at P-littoralis_Contig18:674635..675098- (Pylaiella littoralis U1_48)
CGCGCGTTCCTGCGGACGCCGCTGGCGCTGGGCATGTAAACGTAGTGTTG
TGGTGCATTGACAACGGGTGGGAATACACTGATGGTGTGATGGAGGCCGC
TGCAAAGGAGGGACGCGAGAATGTCATAATGGCATTGGTGGAGAGAGGTT
TCTCATGCCGGGTCAACGTTGATCAGGCTGCACCGCCGCAAGTACCGGGG
GACAACCTTTTAGAAATGGTTTTGCGTGAGCTGCCGCGTTGTGATTGTTA
TGCCGGTTTGTGATTGTTGTTGACCCTAGAGTCTCCGGCGTTTGTCATGC
CGGCTTCCCGTTCGACAGGCTGCACCGCGTGAAGTACTAGGGTTAGGGGG
GAGGGGGACCTGTGGATTGTTCTAGGACCGACCGAGAGGACTTGCACTCG
AACACTTGTTTTTTTTGCTTTTTCCCCCTTCCCCTTTTTCCTCGCCCGTC
TCGTAGGTTTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:674635..675098-

>mRNA_P-littoralis_Contig18.147.1 ID=mRNA_P-littoralis_Contig18.147.1|Name=mRNA_P-littoralis_Contig18.147.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig18:674635..675098- (Pylaiella littoralis U1_48)
ATGGAGGCCGCTGCAAAGGAGGGACGCGAGAATGTCATAATGGCATTGGT
GGAGAGAGGTTTCTCATGCCGGGTCAACGTTGATCAGGCTGCACCGCCGC
AAGTACCGGGGGACAACCTTTTAGAAATGGTTTTGCGTGAGCTGCCGCGT
TGTGATTGTTATGCCGGTTTGTGA
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