mRNA_P-littoralis_Contig18.146.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.146.1
Unique NamemRNA_P-littoralis_Contig18.146.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 3.970e-83
Identity = 121/129 (93.80%), Postives = 122/129 (94.57%), Query Frame = 1 
Query:    1 MWPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGKLEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGLRELEAWPPECK 387
            MWPFR+MTMEMEAAAIFCGGG AVLEGDER EA  KLEFLGELIVGVETVA VMES  GRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGLRELEAWPPECK
Sbjct:  300 MWPFRYMTMEMEAAAIFCGGGGAVLEGDERFEAPSKLEFLGELIVGVETVAAVMESRYGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGLRELEAWPPECK 428
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BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.810e-48
Identity = 78/131 (59.54%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:    1 MWPFRFMTMEMEAAAIFCGG-GDAVLEGDERLEALGKLEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGLRELEAWPPECKP 390
            +W ++FM  E+   A FC    +A+LEG  R +ALGK E++G ++V VETVAV++E+HDG   RYIV  M DGSH+CSCRTLQELGLCCRHFW AMRLS ++KFHVGILN+HWL EQG +    WP   KP
Sbjct:  583 VWAYKFMMDEVAMCATFCSSPSNALLEGASRDDALGKFEYIGMMVVNVETVAVIVENHDGTDKRYIVLGMTDGSHLCSCRTLQELGLCCRHFWAAMRLSRRYKFHVGILNQHWLAEQGRKPTSEWPEGAKP 713
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BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: D7G8P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P1_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.220e-41
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 MWPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGKLEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRT 240
            MWP RFMT+EMEAAAIFCGG +AVLEGDERLEALGKLEFLGELIVGVETVAVVMES D RVMRYIVCSM DGSHICSC T
Sbjct:  123 MWPLRFMTIEMEAAAIFCGGANAVLEGDERLEALGKLEFLGELIVGVETVAVVMESRDCRVMRYIVCSMADGSHICSCTT 202
[Close]
BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 9.960e-37
Identity = 78/131 (59.54%), Postives = 80/131 (61.07%), Query Frame = 1 
Query:    1 MWPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGKLEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGLRELEAWPPECKPQ 393
            MWP RFMT+EMEAAAIFC GG+AVLEG ERLEALGKLEFLGELIVGVETVAVVMES DGRVMR                                               HWLTEQGLRELEAWPPECKPQ
Sbjct:  354 MWPLRFMTIEMEAAAIFCVGGNAVLEGGERLEALGKLEFLGELIVGVETVAVVMESRDGRVMR-----------------------------------------------HWLTEQGLRELEAWPPECKPQ 437
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BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5K4E9_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E9_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.300e-33
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 1 
Query:    4 WPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALG-KLEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGL-RELEAWPPECKPQ 393
            WP RFM  EM AA +FC  G   ++G ER  ALG   E++   +  V  V  + E  DG+   Y+V    DGSH+C CRTLQ LGL CRH W A+  SP+F+FHVG+L+ HWLTE+      + WP   +P+
Sbjct:  101 WPRRFMEQEMTAAIMFCQMGGGEVDGPERAAALGCTFEYIEGKLCDVIHVFGIHEQRDGKAFDYLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAIMHSPRFRFHVGVLHEHWLTEKARGTPQQDWPDVARPR 232
[Close]
BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5K3E8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.350e-32
Identity = 63/134 (47.01%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:    4 WPFRFMTMEMEAAAIFC--GGGDAVLEGDERLEALGK-LEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGL-RELEAWPPECKPQ 393
            WP RFM  EM AA +FC  GGG+A  +G ER  ALG+  E++   + GV  V  + E  DG+   Y++    DGS++C CRTLQ LGL CRH W AM  SP+F+FHVG+L+ HWLTE+      + WP   +P+
Sbjct:  325 WPRRFMEQEMTAAIMFCQMGGGEA--DGPERAAALGRTFEYIEGKLCGVIYVFRIHEQRDGKAFDYLILLFSDGSNLCQCRTLQTLGLFCRHVWAAMMHSPRFRFHVGLLHEHWLTEKARGTPQQDWPDVARPR 456
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BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.420e-30
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:    4 WPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGK-LEFLGELIVGVETVAVVMESHD-GRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGL-RELEAWPPECKPQ 393
            WP R M  EM AA +FC      L+G ER  ALG+  E++ + +  V  V  + E  D GR   Y+V    DGSH+C CRT Q LGL CRH W AM  SP+F+FHVG+L++HWLTE+     L+ WP   +P+
Sbjct:  509 WPRRLMEQEMTAAIMFCQMDGGELDGSERAAALGRTFEYIEDKLCDVIYVFGIREHRDDGRTFDYLVLLFSDGSHLCQCRTFQTLGLFCRHVWAAMMYSPRFRFHVGLLHQHWLTEKARGTPLQDWPDVARPR 641
[Close]
BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: D8LU83_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU83_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.380e-29
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1 
Query:    4 WPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGK-LEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGL-RELEAWPPECKPQ 393
            WP RFM  EM AA  FC  G   ++G ER  A G+  E++ + +     V  + E  D +   Y+V    DGSH+C CRTLQ L L CRH W AM  SP+F+FHVG+L+ HWLTE+      + WP   +P+
Sbjct:  443 WPRRFMEQEMTAAITFCQMGGGEVDGPERAAASGRTFEYIEDKLCDAIYVFGIHEQRDDKAFDYLVLLFSDGSHLCQCRTLQTLRLFCRHVWAAMMYSPRFRFHVGLLHEHWLTEKARGTPQQDWPDVARPR 574
[Close]
BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5L2X8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.010e-28
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 1 
Query:    4 WPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGK-LEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKF--------KFHVGILNRHWLTEQGL-RELEAWPPECKPQ 393
            WP RFM  EM AA +FC  G   ++G ER  ALG   E++   +  V  V  + E  DG+   Y+V    DGSH+C C TLQ LGL CRH W AM  SP+F        +FHVG+L+ HWLTE+      + WP   +P+
Sbjct:  170 WPRRFMEQEMTAAIMFCQMGGGEVDGPERAAALGHTFEYIEGKLCDVIYVFGIHEQRDGKGFDYLVLLFSDGSHLCQCLTLQTLGLFCRHVWAAMMHSPRFTFQIGLPFRFHVGLLHEHWLTEKARGTPQQDWPDVARPR 309
[Close]
BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.390e-27
Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 1 
Query:    4 WPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGK-LEFLGELIVGVETVAVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGL-RELEAWPPECKPQ 393
            WP RFM  EM AA +FC  G   ++G ER  ALG+ LE++   +  V  V  + E  DG+   Y+V    DGSH+C CRTLQ LGL CRH W AM  SP+F+FH      HWLTE+      + WP   +P+
Sbjct:  542 WPRRFMEQEMTAAIMFCQMGGGEVDGPERAAALGRTLEYIEGKLCDVINVFGIHEQRDGKAFDYLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAMMHSPRFRFH------HWLTEKARGTPQQDWPDVARPR 667
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JBU5_9PHAE3.970e-8393.80SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JJG6_9PHAE1.810e-4859.54SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G8P1_ECTSI1.220e-4190.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWW3_9PHAE9.960e-3759.54MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K4E9_9PHAE3.300e-3345.45SWIM-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K3E8_9PHAE5.350e-3247.01SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNB0_9PHAE1.420e-3045.86SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LU83_ECTSI5.380e-2943.18SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2X8_9PHAE1.010e-2842.86SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUZ2_9PHAE1.390e-2744.70SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:673015..673407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LU83
Preferred nameFHY3
PFAMsFAR1,MULE,SWIM
Model size394
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue8.82e-30
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
DescriptionMULE transposase domain
Cds size393
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789866.843725-CDS-P-littoralis_Contig18:673014..6734071680789866.843725-CDS-P-littoralis_Contig18:673014..673407Pylaiella littoralis U1_48CDSP-littoralis_Contig18 673015..673407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.146.1prot_P-littoralis_Contig18.146.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 673015..673407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.146.1

>prot_P-littoralis_Contig18.146.1 ID=prot_P-littoralis_Contig18.146.1|Name=mRNA_P-littoralis_Contig18.146.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MWPFRFMTMEMEAAAIFCGGGDAVLEGDERLEALGKLEFLGELIVGVETV
AVVMESHDGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPK
FKFHVGILNRHWLTEQGLRELEAWPPECKPQ
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mRNA from alignment at P-littoralis_Contig18:673015..673407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.146.1 ID=mRNA_P-littoralis_Contig18.146.1|Name=mRNA_P-littoralis_Contig18.146.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig18:673015..673407+ (Pylaiella littoralis U1_48)
ATGTGGCCGTTTCGGTTCATGACCATGGAGATGGAGGCCGCCGCGATATT
TTGTGGTGGTGGTGATGCAGTGCTAGAGGGGGACGAGCGTTTGGAAGCAC
TAGGGAAACTAGAGTTCCTGGGCGAGTTGATTGTGGGCGTCGAGACGGTC
GCCGTAGTCATGGAAAGCCATGACGGCCGGGTCATGCGGTACATAGTTTG
CAGCATGCAGGATGGCAGTCACATCTGCTCGTGCCGCACACTTCAAGAAC
TCGGTCTTTGTTGCCGGCACTTTTGGCAGGCCATGCGTTTGAGCCCGAAG
TTCAAATTTCACGTAGGCATACTCAACAGGCATTGGCTAACAGAGCAGGG
CCTGAGGGAACTGGAGGCTTGGCCACCAGAGTGCAAGCCTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:673015..673407+

>mRNA_P-littoralis_Contig18.146.1 ID=mRNA_P-littoralis_Contig18.146.1|Name=mRNA_P-littoralis_Contig18.146.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig18:673015..673407+ (Pylaiella littoralis U1_48)
ATGTGGCCGTTTCGGTTCATGACCATGGAGATGGAGGCCGCCGCGATATT
TTGTGGTGGTGGTGATGCAGTGCTAGAGGGGGACGAGCGTTTGGAAGCAC
TAGGGAAACTAGAGTTCCTGGGCGAGTTGATTGTGGGCGTCGAGACGGTC
GCCGTAGTCATGGAAAGCCATGACGGCCGGGTCATGCGGTACATAGTTTG
CAGCATGCAGGATGGCAGTCACATCTGCTCGTGCCGCACACTTCAAGAAC
TCGGTCTTTGTTGCCGGCACTTTTGGCAGGCCATGCGTTTGAGCCCGAAG
TTCAAATTTCACGTAGGCATACTCAACAGGCATTGGCTAACAGAGCAGGG
CCTGAGGGAACTGGAGGCTTGGCCACCAGAGTGCAAGCCTCAG
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