mRNA_P-littoralis_Contig18.140.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.140.2
Unique NamemRNA_P-littoralis_Contig18.140.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.140.2 vs. uniprot
Match: D8LS33_ECTSI (Conserved Cys-containing small protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS33_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.900e-26
Identity = 66/122 (54.10%), Postives = 81/122 (66.39%), Query Frame = 1 
Query: 1156 HSQYCAAGVLVGLPLSIHKKSYWPVVMAAAVGTAADYKEGSANCRRQREALMACVARKNAEEAAKMQHAPPPASTTEDFMHNPPQEAWQADRQQDWPEKGREQNFDGNSVDQEAER-GGKKW 1518
            H +YCAAGVL+GLPLS+HKKSYWPV +AA  GTAAD+KEG+A+CR QREALMA +ARKNA +A   Q A   A TTE+   + PQE W  + +        EQ F      +E +R GG KW
Sbjct:   22 HYKYCAAGVLLGLPLSVHKKSYWPVTLAAVAGTAADFKEGTADCRPQREALMAFIARKNAGQAKAQQEAS--AGTTENPGQHSPQEGWPGEGRXXXXXXXWEQTFHDRDGGKEVDREGGDKW 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.140.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS33_ECTSI1.900e-2654.10Conserved Cys-containing small protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:657501..661081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2207
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionConserved Cys-containing small protein
Ec32 orthologEc-08_001970.1
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789866.6029675-UTR-P-littoralis_Contig18:657500..6581861680789866.6029675-UTR-P-littoralis_Contig18:657500..658186Pylaiella littoralis U1_48UTRP-littoralis_Contig18 657501..658186 -
1680789866.640828-UTR-P-littoralis_Contig18:660088..6610811680789866.640828-UTR-P-littoralis_Contig18:660088..661081Pylaiella littoralis U1_48UTRP-littoralis_Contig18 660089..661081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789866.61686-CDS-P-littoralis_Contig18:658186..6584351680789866.61686-CDS-P-littoralis_Contig18:658186..658435Pylaiella littoralis U1_48CDSP-littoralis_Contig18 658187..658435 -
1680789866.6282568-CDS-P-littoralis_Contig18:659809..6600881680789866.6282568-CDS-P-littoralis_Contig18:659809..660088Pylaiella littoralis U1_48CDSP-littoralis_Contig18 659810..660088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.140.2prot_P-littoralis_Contig18.140.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 658187..660088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.140.2

>prot_P-littoralis_Contig18.140.2 ID=prot_P-littoralis_Contig18.140.2|Name=mRNA_P-littoralis_Contig18.140.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MISTKNGRNTTNIGAIILVSYLVVISIAGSASLHAALCLRKQPCTGANYL
VFPRHSQYCAAGVLVGLPLSIHKKSYWPVVMAAAVGTAADYKEGSANCRR
QREALMACVARKNAEEAAKMQHAPPPASTTEDFMHNPPQEAWQADRQQDW
PEKGREQNFDGNSVDQEAERGGKKW*
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mRNA from alignment at P-littoralis_Contig18:657501..661081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.140.2 ID=mRNA_P-littoralis_Contig18.140.2|Name=mRNA_P-littoralis_Contig18.140.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3581bp|location=Sequence derived from alignment at P-littoralis_Contig18:657501..661081- (Pylaiella littoralis U1_48)
TTTTGTTTCAACATGAGACAGCAATCCGAGGAGGAGCAGGTGCTGGCTGC
CGAGCTGGCAAGCTGCATGCTGTCACACTACAAGGTTTGAGTTCAGCGCA
AGCACACCCGACCATATACTGGAGTACAACTGGAGCACAAATACGGAGTA
CTTGTCATACCGCACTTTTTGTATGCATCGGGTGTGGGTGACATCTGTGT
TTGTCCCGAACGGCGTTTCGTTTGACATTCCATTATTTCTGGACGCTGGT
CTACAAGCTTCCGGTATATTTTGGCATGTCAGCCGGAGTTACGCATATTT
CAAGAGGAAGGTCACATAGTTATGTTTTTTTTAGTCCCCACCCACATTTT
CCTCCGGCCCCTTAGGGTTAGGGTTAGGGTCAGGATTGAATTAGCTGTCC
CCTTCCCTCGTCGACTGTCGAGCCGTCGGGTTTTGTTCACTGCTGTGCGT
GTGTTTTTTCATCCCATTTGTTCTGCGCATCAGTCTCCACCGTTCGGCAT
GACGTGGGTGTGTGTGTTCATCCCATTTATTCTGGGCACCGGTCTACACC
TTTCGGTACAAGTATGAAAAGTGGTGCTCATGAAATATTCAATTTCTTCG
GCTGGGTATCATATTAATATGATACAACTGTAGTGAGAATACATCACGAA
ACCACCCGTTTGATAAAAATGTGTGCGAGGTGCAGTTGACCCGTGTGTGG
GCGACGTGTGGGGTCGTTTGGTATGAGGAAAGGCGCTGGGCCGTATGACT
CTAGGCCGTGTATTTGGAAAAGGGTCCTGGGAAAGAACTTGATTGATATA
AAGCCCTGCAAGGCGTGGAGGCTGGAGTACAGCAAGGATAGGAAGAAGGC
CAAGCCAAAATAATCAGGTGGCGCCAGATTTTTGCCAGGTCGAGTACAAC
AACAGCAGTAGTAGCGTATGCGCAACAGGTTCGCATATATTTCCTCAGCA
ACTGATCCTGGTACATTTGACAGGCAAACCACCTGCGAACCTTATGATAT
CAACGAAGAATGGAAGGAACACAACAAACATCGGTGCTATCATACTGGTG
TCATATCTGGTTGTCATATCCATAGCAGGATCGGCCTCTCTGCATGCAGC
ACTTTGTTTGCGAAAACAGCCTTGCACAGGGGCCAATTACCTCGTCTTCC
CCCGGCATTCACAGTACTGCGCGGCTGGAGTGTTGGTGGGCCTCCCTCTG
AGCATTCACAAGAAGAGCTATTGGCCGGTGGTCATGGCGGCGGCGGTGGG
GACGGCGGCCGACTACAAGGAGGTAAGAGTTTAGGACTCTTAGCATGGGG
TGGCACGAGAGTTGCAGAATTGCTGCGGTATGTTGTGTCGCGCTAGGGTT
GATTATACTGGATGGAAGATCGGTTTGCCTACACTAGCGTAGCTCCACGA
GGACGATTGTTGCATGGTTGCTCCGCAAAGCACTCTGTCGTCCTTCCGGA
CCCCAGTCTACGTATGACCTTCTCGCGGTGGCTGCCGCGGCCCACGTGTG
CACATACGGCACAGCCAGTATACTGCTTCAACTGACTAGAGCAACCCAGT
GCCAGCCCAACTGTTTTTGTGGGACCGGCGCCACACTTCTTTCTGGGACT
TTTTCTTGCTGAAGTTCAAAATGATCCTCACCCGAAAGAAAACTTGTCAC
GATGAGTCGGTGGCGGAACCCTCGAACGGCTCAATGTTTTGTCCTTGGAA
CACAACATGTGCAGCACCAACGTCTTCTCGGCCCCGCGAACATTGAATCG
CCACGAAGCGTATATCTACGATCGAAAAAGGAGCTCGCTCCAATTCCCCC
GCCAAAATTTTGCCACAGGTACCGCCCACAGCCAAGACACATCGTACCGA
GAATCTCAAAATACTGGAGCATACGCCTCAAAGTCTTAATCGCGGTTGTT
GTCCAGGACCGCAAGCAGCAGCACTGGTGGTGCTGCCGCGTGTTGTATGT
CGAAAAAATGAAAGGGCCTGTTTGAGGCGGGCGGGAGGTTTCGCCACCAG
CTGATTGCGACATATTCTCGAGTTTGGGTTTCGAATATTGTGAAGTTATT
TTTACCCACTTCCGCAAGAAACAGCCTGACTGCAGTGCACGCATGTTATA
TTTTAAGATATTGCTGGAAGAGGGTTTTAGTGGCCCCTCCGGCCTTCTTT
TTTCCGCACGGATAGCGGCGGCGGTCCAGAGTTTGTTCAGAAAGGAGAGG
CTGATTTGTTCGAGTTTTACAAGAGTTGGACATGGAATCAGGTGCGATGG
GGTGCGCCCGTGAAACACCGCTGTGTAATACCCGCGATGGCTTGGGGCCT
GACCTGGGCGTATAAACTGAAATCGTGGTCACCAATATCAGTTGCGTTCC
TCCTCTGTCCGTCTCTGGGTACCGTCCTAGAAGCAGCCCGCCACGCTTCA
GTTCTTTGCATCCCCCATCACGCGTCATTCTTATCCTACCGCCGCGAAAG
TTCCTCGTCTGTCCGCATATCCTACCGCCGCGAAAGTTCCTTGTCTTTCC
GCACATCCTCCACCGCCGACGTTCCTTGTCTGTCCGCACATCCTACCGCC
TAGAATTTTCCTTGTCTTTCAGCACATCCTACCGCCGCCGAAGTTCCTTC
TCTTTCCACGGCTTATGTCTTACATATCCCGTATTACAATCGACAGGGTA
GCGCAAACTGCAGGCGACAACGAGAAGCGCTGATGGCGTGCGTCGCTCGA
AAAAATGCCGAGGAGGCGGCAAAGATGCAACACGCACCACCACCAGCTAG
CACCACAGAAGATTTCATGCACAATCCGCCGCAGGAGGCCTGGCAGGCCG
ACAGGCAGCAAGACTGGCCTGAGAAGGGACGGGAGCAAAATTTTGACGGG
AATAGTGTCGATCAAGAGGCCGAGAGGGGAGGCAAGAAGTGGTGATCCCC
TTCCCTCCCCTCTCGACTACTGCCGCGGGTTGGTGTGACTAGTCTGGGGG
GCTGTATGATGTGTATCAGGGACACATTAGTTTTTGTTCATTAGTAGGAG
GGTATGTTGTGGGTACAACGTGCGTATGCGGCAGCAGCGCGGGAGAATGA
TAGTGCGCTCGATCGACGAAAGGCCTGCGAGTTCGTTCTGTTCTGTACCG
GGAAAGGGTTTGAGGTTTAAGGGTCGCAGTTTTGCTTTGACGAATCGCCT
TGCGCGTATGACGACAAGCCTAGATTTCTCCAGTCCCACGACCGAATAAT
TGGATGTCGACGGTGCTGTCATCATCACCGTTTTTTTTTTCCGTTTTCCC
GCAGTAGCAACAACAGGCAGCGACCATTTCACGTCGAGCTCTCCACACTT
TGTGGCGTACCTCACTGCCTGTGCGAAGCCGCGTCACTGCTGCTGTCGTT
GCCGAAGCTTTATTTGGCACGTGCTGGGCTATCATTCGACACCGTGCTTT
CGCGGAAGAACGTGGGCATCCGCGCTTTGATACGTATCGAACCTATCTAT
ATATCGGCGTTATCGCACGAGGGGTTCGAGAATCAACAGTCAAATAATTT
ACGAAACTCGATCTCTGCACGGCGGGTTAGATCGCCTCACGGGAGCGCGA
TGACTACGGGAAAAACCAACTTCGTACTTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:657501..661081-

>mRNA_P-littoralis_Contig18.140.2 ID=mRNA_P-littoralis_Contig18.140.2|Name=mRNA_P-littoralis_Contig18.140.2|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig18:657501..661081- (Pylaiella littoralis U1_48)
ATGATATCAACGAAGAATGGAAGGAACACAACAAACATCGGTGCTATCAT
ACTGGTGTCATATCTGGTTGTCATATCCATAGCAGGATCGGCCTCTCTGC
ATGCAGCACTTTGTTTGCGAAAACAGCCTTGCACAGGGGCCAATTACCTC
GTCTTCCCCCGGCATTCACAGTACTGCGCGGCTGGAGTGTTGGTGGGCCT
CCCTCTGAGCATTCACAAGAAGAGCTATTGGCCGGTGGTCATGGCGGCGG
CGGTGGGGACGGCGGCCGACTACAAGGAGGGTAGCGCAAACTGCAGGCGA
CAACGAGAAGCGCTGATGGCGTGCGTCGCTCGAAAAAATGCCGAGGAGGC
GGCAAAGATGCAACACGCACCACCACCAGCTAGCACCACAGAAGATTTCA
TGCACAATCCGCCGCAGGAGGCCTGGCAGGCCGACAGGCAGCAAGACTGG
CCTGAGAAGGGACGGGAGCAAAATTTTGACGGGAATAGTGTCGATCAAGA
GGCCGAGAGGGGAGGCAAGAAGTGGTGA
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