mRNA_P-littoralis_Contig18.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.132.1
Unique NamemRNA_P-littoralis_Contig18.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.132.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.910e-15
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:  160 KRGEDEPTMFMV---RFESLF-----RSMELEDAFCRTVPIKVGVLSREELYGQFHRREVDAAYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSRVTVL 543
            K+GEDE   F++      ++F     R +EL +     +P+    +S EEL        V+    +WNLL+ SV  + ++ ++ A+GSPSGGW  F NYY P+A AEKER   +++ L   + E P+ +F R  VL
Sbjct:   15 KQGEDEQAKFLIFRSNMVAMFAQEGGRDVELTE---EKIPVGKEGVSMEELPRVHSSDSVEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVL 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE1.910e-1535.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:598058..598602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size546
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789865.8710768-CDS-P-littoralis_Contig18:598059..5986021680789865.8710768-CDS-P-littoralis_Contig18:598059..598602Pylaiella littoralis U1_48CDSP-littoralis_Contig18 598060..598602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.132.1prot_P-littoralis_Contig18.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 598060..598602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.132.1

>prot_P-littoralis_Contig18.132.1 ID=prot_P-littoralis_Contig18.132.1|Name=mRNA_P-littoralis_Contig18.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
ATHDIERTDGTSSAGQDTVVQQLITALGRMGTTPNQGSTVSTYSQGSRVE
LTGKRGEDEPTMFMVRFESLFRSMELEDAFCRTVPIKVGVLSREELYGQF
HRREVDAAYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQAD
AEKERARQEWYDLRQGLNEAPKQFFSRVTVL
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mRNA from alignment at P-littoralis_Contig18:598058..598602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.132.1 ID=mRNA_P-littoralis_Contig18.132.1|Name=mRNA_P-littoralis_Contig18.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=545bp|location=Sequence derived from alignment at P-littoralis_Contig18:598058..598602- (Pylaiella littoralis U1_48)
GCCACACACGACATCGAGCGTACGGACGGAACCTCATCTGCGGGACAGGA
CACCGTGGTGCAGCAGCTAATCACTGCGCTGGGAAGAATGGGGACAACGC
CCAACCAAGGGTCGACGGTTAGCACGTATAGTCAGGGGAGTAGAGTGGAA
CTTACTGGAAAGAGGGGGGAAGATGAGCCGACAATGTTCATGGTACGGTT
TGAGTCTTTGTTTCGATCTATGGAGTTGGAAGATGCGTTTTGCAGGACAG
TACCGATCAAGGTAGGAGTGCTGTCCAGGGAGGAATTGTACGGGCAATTT
CACAGACGTGAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAA
CAGTGTGGTAGACGTCGCAATGATGGTTAGGATGACGGCTGAAGGTAGTC
CCAGTGGAGGGTGGTCTGCGTTCAAAAACTATTACACTCCACAGGCAGAT
GCTGAGAAAGAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACT
GAACGAAGCACCAAAGCAGTTTTTCTCCAGGGTAACAGTGCTGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:598058..598602-

>mRNA_P-littoralis_Contig18.132.1 ID=mRNA_P-littoralis_Contig18.132.1|Name=mRNA_P-littoralis_Contig18.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig18:598058..598602- (Pylaiella littoralis U1_48)
GCCACACACGACATCGAGCGTACGGACGGAACCTCATCTGCGGGACAGGA
CACCGTGGTGCAGCAGCTAATCACTGCGCTGGGAAGAATGGGGACAACGC
CCAACCAAGGGTCGACGGTTAGCACGTATAGTCAGGGGAGTAGAGTGGAA
CTTACTGGAAAGAGGGGGGAAGATGAGCCGACAATGTTCATGGTACGGTT
TGAGTCTTTGTTTCGATCTATGGAGTTGGAAGATGCGTTTTGCAGGACAG
TACCGATCAAGGTAGGAGTGCTGTCCAGGGAGGAATTGTACGGGCAATTT
CACAGACGTGAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAA
CAGTGTGGTAGACGTCGCAATGATGGTTAGGATGACGGCTGAAGGTAGTC
CCAGTGGAGGGTGGTCTGCGTTCAAAAACTATTACACTCCACAGGCAGAT
GCTGAGAAAGAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACT
GAACGAAGCACCAAAGCAGTTTTTCTCCAGGGTAACAGTGCTG
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