mRNA_P-littoralis_Contig18.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.130.1
Unique NamemRNA_P-littoralis_Contig18.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.130.1 vs. uniprot
Match: Q8QN81_ESV1K (EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K)

HSP 1 Score: 456 bits (1174), Expect = 3.130e-157
Identity = 223/379 (58.84%), Postives = 287/379 (75.73%), Query Frame = 1 
Query:    1 GIRLTLACPPCCLERSSEEGSSIVCFSKARALFPRTPPKRIKRLGSTPRRNPHYRSAASMRLYAMAELEIIAGSADHDQSDRAQTLVDRRQAKLERMVRVHKISPVSPIHRALFEHIFGDYLGHKKPRRKLNELKFRFRAQAIAIQLCPADPVCAMNFLENRKIVDYSDAQLLADFEYSLFLSSRVLRLEGLSISRYICPAQGIEMKNGPLAEIPRCLDQLRKNAPRMLRMCLQSLGF-DKAGVDEMMNNVAMKTRIKRCIKYAHDPETVAAKMVYFWRTRNDQVHRRHVLKKAMAEKSLNIRPDSVFCHDYIHGNIDVDLDEIVGVQYITRELFEDGGPRLWSRVHRACESAFRESLLEMGNDMRTSIVVAMR-CAPR 1131
            GIRLTL C  C     S+EG  IVCFSKAR LFP  PPKR+K+L STPRRNPHYR+AA MR+Y++AEL ++  + D +   +A  +  +RQ +LER+ RVH ISP +P+HRALF HIFGDYL    P++KL ++K+RF A  I+++LCP DPV AMN+ ENR I  +   QL  DFEYSLF+S+R  RLEG++ISR+ CP++  E+KNGPL++IP  +++L+KNAPRMLRM LQ  G      V+ MM + AM+TR++RCI+YAHDPETVAAKM  FWRT++D+ HRR VL+ AM  + L+IRPDSV+CHDYI G IDVDL+E+VG+QYITRELF+ GGPR WS  H ACESA+R++LLE GN M  SI +A+R CA R
Sbjct:   16 GIRLTLVCTSCASTARSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQAAVDEECEAKALEVEKKRQVRLERLTRVHGISPAAPLHRALFSHIFGDYLWATHPKQKLKQVKYRFSAHDISVRLCPHDPVAAMNYCENRGITAFVYDQLRRDFEYSLFVSTRAFRLEGVAISRFFCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQGSCSTTEVERMMKHPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRVLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYRQALLENGNTMDQSIKMALRGCASR 394
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BLAST of mRNA_P-littoralis_Contig18.130.1 vs. uniprot
Match: A0A6H5JM66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM66_9PHAE)

HSP 1 Score: 452 bits (1162), Expect = 2.630e-153
Identity = 219/376 (58.24%), Postives = 282/376 (75.00%), Query Frame = 1 
Query:    1 GIRLTLACPPCCLERSSEEGSSIVCFSKARALFPRTPPKRIKRLGSTPRRNPHYRSAASMRLYAMAELEIIAGSADHDQSDRAQTLVDRRQAKLERMVRVHKISPVSPIHRALFEHIFGDYLGHKKPRRKLNELKFRFRAQAIAIQLCPADPVCAMNFLENRKIVDYSDAQLLADFEYSLFLSSRVLRLEGLSISRYICPAQGIEMKNGPLAEIPRCLDQLRKNAPRMLRMCLQSLG---FDKAGVDEMMNNVAMKTRIKRCIKYAHDPETVAAKMVYFWRTRNDQVHRRHVLKKAMAEKSLNIRPDSVFCHDYIHGNIDVDLDEIVGVQYITRELFEDGGPRLWSRVHRACESAFRESLLEMGNDMRTSIVVAMR 1119
            GIRLTL C  C     S+EG  IVCFSKAR LFP  PPKR+K+L STPRRNPHYR+AA MR+Y++AEL ++ G+ D +   +A  +  +RQ +LER+ RVH ISP +P+H ALF HIFGDYL    P++KL ++K+RF A  I+++LC  DPV AMN+ ENR I  +   QL   FEYSLF+S+R  RLEG++ISRY+CP++  E+KNGPL++IP  +++L+KNAPRMLRM LQ  G        V+ MM   AM+TR++RCI+YAHDPETVAAKM  FWRT++D+ HRR +L+ AM  + L+IRPDSV+CHDYI G IDVDL+E+VG+QYITRELF+ GGPR WS  H ACESA+RE+LLE GN M  SI +A+R
Sbjct:   19 GIRLTLVCKSCASTALSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEAKAAQVAQKRQVRLERLTRVHGISPAAPLHHALFSHIFGDYLWAAHPKQKLKQVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYDQLRRAFEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQGSCNISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYREALLENGNTMDQSIKMALR 394
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BLAST of mRNA_P-littoralis_Contig18.130.1 vs. uniprot
Match: A0A6H5JEH1_9PHAE (HTH_OrfB_IS605 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH1_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.130e-38
Identity = 85/177 (48.02%), Postives = 101/177 (57.06%), Query Frame = 1 
Query:  298 VHKISPVSPIHRALFEHIFGDYLGHKKPRRKLNELKFRFRAQAIAIQLCPADPVCAMNFLENRKIVDYSDAQLLADFEYSLFLSSRVLRLEGLSISRYICPAQGIEMKNGPLAEIPRCLDQLRKNAPRMLRMCLQSLGFDKAGVDEMMNNVAMKTRIKRCIKYAHDPETVAAKMVYF 828
            VHKISP S IH  LFEHIFGDYL    P++ L +LK+RF A  I++ LC ADPVCAM+ LENR I D                                          GPL++IP  +++L++NAPRMLRM LQSLGF KA    MMN   MKTR++RC KYAHDPETVA  M  F
Sbjct:   19 VHKISPASQIHYVLFEHIFGDYLWATSPKKTLKQLKYRFFAHDISLDLCAADPVCAMHCLENRSIDD------------------------------------------GPLSDIPENVNRLKQNAPRMLRMSLQSLGFAKAENYRMMNYSPMKTRLRRCFKYAHDPETVAKNMSEF 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QN81_ESV1K3.130e-15758.84EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K[more]
A0A6H5JM66_9PHAE2.630e-15358.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEH1_9PHAE5.130e-3848.02HTH_OrfB_IS605 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:583544..584674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1131
Hectar predicted targeting categoryother localisation
Exons1
Cds size1131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789865.8444588-CDS-P-littoralis_Contig18:583543..5846741680789865.8444588-CDS-P-littoralis_Contig18:583543..584674Pylaiella littoralis U1_48CDSP-littoralis_Contig18 583544..584674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.130.1prot_P-littoralis_Contig18.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 583544..584674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.130.1

>prot_P-littoralis_Contig18.130.1 ID=prot_P-littoralis_Contig18.130.1|Name=mRNA_P-littoralis_Contig18.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=377bp
GIRLTLACPPCCLERSSEEGSSIVCFSKARALFPRTPPKRIKRLGSTPRR
NPHYRSAASMRLYAMAELEIIAGSADHDQSDRAQTLVDRRQAKLERMVRV
HKISPVSPIHRALFEHIFGDYLGHKKPRRKLNELKFRFRAQAIAIQLCPA
DPVCAMNFLENRKIVDYSDAQLLADFEYSLFLSSRVLRLEGLSISRYICP
AQGIEMKNGPLAEIPRCLDQLRKNAPRMLRMCLQSLGFDKAGVDEMMNNV
AMKTRIKRCIKYAHDPETVAAKMVYFWRTRNDQVHRRHVLKKAMAEKSLN
IRPDSVFCHDYIHGNIDVDLDEIVGVQYITRELFEDGGPRLWSRVHRACE
SAFRESLLEMGNDMRTSIVVAMRCAPR
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mRNA from alignment at P-littoralis_Contig18:583544..584674-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.130.1 ID=mRNA_P-littoralis_Contig18.130.1|Name=mRNA_P-littoralis_Contig18.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1131bp|location=Sequence derived from alignment at P-littoralis_Contig18:583544..584674- (Pylaiella littoralis U1_48)
GGAATTCGGCTCACGCTGGCCTGCCCCCCTTGCTGCTTGGAGCGCAGTAG
CGAAGAGGGCAGCAGCATCGTCTGTTTTTCAAAAGCCAGAGCCTTGTTCC
CTCGGACACCGCCGAAACGCATAAAACGATTAGGGTCTACTCCGCGCAGG
AATCCGCACTACCGGAGCGCCGCGTCGATGCGGTTGTACGCCATGGCCGA
ACTCGAAATTATTGCGGGAAGCGCAGACCACGATCAATCGGATCGAGCAC
AAACGCTGGTCGATCGACGACAGGCCAAGCTGGAAAGGATGGTAAGGGTG
CACAAAATAAGTCCGGTGTCACCGATTCATCGCGCTCTGTTCGAGCACAT
TTTCGGGGACTATCTGGGTCACAAAAAGCCTAGGAGAAAGCTGAACGAGC
TCAAGTTCAGGTTCCGGGCCCAAGCCATTGCGATTCAGCTTTGCCCGGCG
GATCCGGTGTGTGCGATGAACTTCCTCGAAAATCGCAAAATAGTTGATTA
TAGCGACGCGCAATTGCTAGCCGATTTTGAATACTCGCTCTTTCTCTCAT
CTCGTGTGCTTCGGCTCGAGGGACTGTCGATCTCTCGTTATATCTGCCCG
GCACAAGGGATAGAGATGAAAAACGGACCTTTGGCCGAGATCCCGAGATG
CCTCGACCAGCTCAGGAAGAATGCGCCACGAATGCTCAGGATGTGTCTGC
AGAGTCTCGGTTTTGATAAAGCCGGAGTCGATGAGATGATGAACAATGTC
GCCATGAAAACCAGGATCAAGAGATGCATCAAATACGCGCACGACCCCGA
AACGGTCGCTGCAAAGATGGTGTATTTCTGGAGAACGAGAAACGATCAAG
TGCACCGGCGCCATGTCCTGAAAAAGGCAATGGCAGAGAAGAGCCTGAAC
ATAAGGCCGGACAGTGTCTTCTGTCACGATTATATACACGGAAACATTGA
TGTAGATTTGGACGAGATCGTTGGCGTTCAGTACATCACACGAGAGCTTT
TCGAAGATGGCGGTCCTCGGCTGTGGAGCAGGGTTCACCGTGCATGCGAG
TCCGCTTTTAGGGAGTCCCTTTTGGAGATGGGCAACGACATGCGGACGTC
GATTGTCGTAGCCATGAGGTGCGCTCCGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:583544..584674-

>mRNA_P-littoralis_Contig18.130.1 ID=mRNA_P-littoralis_Contig18.130.1|Name=mRNA_P-littoralis_Contig18.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1131bp|location=Sequence derived from alignment at P-littoralis_Contig18:583544..584674- (Pylaiella littoralis U1_48)
GGAATTCGGCTCACGCTGGCCTGCCCCCCTTGCTGCTTGGAGCGCAGTAG
CGAAGAGGGCAGCAGCATCGTCTGTTTTTCAAAAGCCAGAGCCTTGTTCC
CTCGGACACCGCCGAAACGCATAAAACGATTAGGGTCTACTCCGCGCAGG
AATCCGCACTACCGGAGCGCCGCGTCGATGCGGTTGTACGCCATGGCCGA
ACTCGAAATTATTGCGGGAAGCGCAGACCACGATCAATCGGATCGAGCAC
AAACGCTGGTCGATCGACGACAGGCCAAGCTGGAAAGGATGGTAAGGGTG
CACAAAATAAGTCCGGTGTCACCGATTCATCGCGCTCTGTTCGAGCACAT
TTTCGGGGACTATCTGGGTCACAAAAAGCCTAGGAGAAAGCTGAACGAGC
TCAAGTTCAGGTTCCGGGCCCAAGCCATTGCGATTCAGCTTTGCCCGGCG
GATCCGGTGTGTGCGATGAACTTCCTCGAAAATCGCAAAATAGTTGATTA
TAGCGACGCGCAATTGCTAGCCGATTTTGAATACTCGCTCTTTCTCTCAT
CTCGTGTGCTTCGGCTCGAGGGACTGTCGATCTCTCGTTATATCTGCCCG
GCACAAGGGATAGAGATGAAAAACGGACCTTTGGCCGAGATCCCGAGATG
CCTCGACCAGCTCAGGAAGAATGCGCCACGAATGCTCAGGATGTGTCTGC
AGAGTCTCGGTTTTGATAAAGCCGGAGTCGATGAGATGATGAACAATGTC
GCCATGAAAACCAGGATCAAGAGATGCATCAAATACGCGCACGACCCCGA
AACGGTCGCTGCAAAGATGGTGTATTTCTGGAGAACGAGAAACGATCAAG
TGCACCGGCGCCATGTCCTGAAAAAGGCAATGGCAGAGAAGAGCCTGAAC
ATAAGGCCGGACAGTGTCTTCTGTCACGATTATATACACGGAAACATTGA
TGTAGATTTGGACGAGATCGTTGGCGTTCAGTACATCACACGAGAGCTTT
TCGAAGATGGCGGTCCTCGGCTGTGGAGCAGGGTTCACCGTGCATGCGAG
TCCGCTTTTAGGGAGTCCCTTTTGGAGATGGGCAACGACATGCGGACGTC
GATTGTCGTAGCCATGAGGTGCGCTCCGCGC
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