mRNA_P-littoralis_Contig18.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.126.1
Unique NamemRNA_P-littoralis_Contig18.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: A0A6P0SSH2_9CYAN (IS607 family transposase n=5 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SSH2_9CYAN)

HSP 1 Score: 179 bits (453), Expect = 1.030e-53
Identity = 90/186 (48.39%), Postives = 126/186 (67.74%), Query Frame = 1
Query:    1 MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRT--TTRRRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNK 552
            +NYV   V + + GVS  +  RW  +G ++ I+TPGG  RY L+ +V+IR     T R  I Y RVSS  QK+DL +QVQ  +  +P+ EI+  IGSG+NFKRKGL  ++D V+ G  + VV+AH+DRLCRF FD   W+C +  T+ +V D+   S EQE+ ED++A+IHVFSC+L+G R+YKNK
Sbjct:    5 VNYVPPRVASNRLGVSTKTLERWLESGKIQGIKTPGGQRRYDLNSVVSIRSEKIRTDRSTILYARVSSRSQKNDLEQQVQFLQSRYPDAEIIKDIGSGLNFKRKGLQALLDRVIGGSCKYVVVAHKDRLCRFGFDLISWLCSKFQTKILVLDEKNLSPEQEMVEDVLAVIHVFSCRLYGLRKYKNK 190          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: A0A6P0IUF8_9CYAN (IS607 family transposase n=3 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0IUF8_9CYAN)

HSP 1 Score: 178 bits (452), Expect = 1.500e-53
Identity = 92/191 (48.17%), Postives = 126/191 (65.97%), Query Frame = 1
Query:    1 MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAI---RDRTTTRRRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPKD 564
            +NYV   V A + GVS  +  RW   G ++ I+TPGG  RY LD +V+I   +  T  R  I Y RVSS  QK+DL +QVQ  K  +P+ EI+  IGSG+NF RKGL  ++D VL+G  + +V+AH+DRLCRF FD   W+C +  T+ +V D+   S EQE+ ED++A+IHVFSC+L+G R+YK K  KD
Sbjct:    5 VNYVPPRVAAARLGVSTKTLERWLNEGKIQGIRTPGGQRRYDLDSVVSIPCTKTTTDNRATILYARVSSRSQKNDLEQQVQFLKSRYPDAEIIRDIGSGLNFSRKGLRTLLDRVLDGTCKYIVVAHKDRLCRFGFDLVSWLCSKFETKILVLDEKNLSPEQEMVEDVLAVIHVFSCRLYGLRKYKQKIIKD 195          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: A0A6P0PP25_9CYAN (IS607 family transposase n=7 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0PP25_9CYAN)

HSP 1 Score: 177 bits (449), Expect = 4.280e-53
Identity = 91/192 (47.40%), Postives = 126/192 (65.62%), Query Frame = 1
Query:    1 MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRTTTRRR---IAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPKDT 567
            + YV   V A + GVS  +  RW   G ++ I+TPGG  RY LD +V+I  + T R     I Y RVSS  Q+DDL +QVQ  K  +P+ E++  IGSG+NFKRKGL  ++D VL G  + +V+AH+DRLCRF FD   W+C +  T+ +V D+   S EQE+ ED++AIIHVFSC+L+G R+YK K  +D+
Sbjct:    5 IKYVPPRVAATRLGVSTRTLERWLDEGKIQGIKTPGGQRRYNLDSVVSISTKKTDRDERATILYARVSSRSQRDDLDQQVQFLKSRYPDAEVIRDIGSGLNFKRKGLHSLLDRVLSGTCKYIVVAHKDRLCRFGFDLISWLCSKFKTKILVLDEKNLSPEQEMVEDVLAIIHVFSCRLYGLRKYKRKILEDS 196          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: A0A6P0SVG0_9CYAN (IS607 family transposase n=2 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SVG0_9CYAN)

HSP 1 Score: 175 bits (444), Expect = 2.450e-52
Identity = 89/187 (47.59%), Postives = 124/187 (66.31%), Query Frame = 1
Query:    1 MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRTTTR---RRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNK 552
            +NYV   V + + GVS  +  RW   G ++ I+TPGG  RY LD +V+I  + T R     I Y RVSS  QK+DL +QVQ  K  +P+ EI+  +GSG+NFKRKGL  ++D VL G  + +V+AH+DRLCRF FD   W+C +  T+ +V D+   S EQE+ ED++A+IHVFSC+L+G R+YK K
Sbjct:    5 VNYVPPRVASIRLGVSTRTLERWLEEGKIQGIKTPGGQRRYDLDSVVSIPTKKTDRGDRATILYARVSSRSQKNDLEQQVQFLKSRYPKAEIIKDVGSGLNFKRKGLQSLLDRVLNGTCKYIVVAHKDRLCRFGFDLISWLCSKFQTKILVLDEKNLSPEQEMVEDVLAVIHVFSCRLYGLRKYKKK 191          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: A0A1U7MZ12_9CYAN (DNA invertase n=12 Tax=Moorena TaxID=1155738 RepID=A0A1U7MZ12_9CYAN)

HSP 1 Score: 174 bits (442), Expect = 4.210e-52
Identity = 88/184 (47.83%), Postives = 121/184 (65.76%), Query Frame = 1
Query:    1 MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRTTTRRRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNK 552
            +NYV   V A++ GVS  +  RW  AG ++ I+TPGG  RY LD +V+I      R  I Y RVSS  QK DL +QV+  K  +P  E++  IGSG+NFKRKGL  ++D VL    E +V+AH+DRLCRF FD   W+C +  T+ +V D+   S EQE+ ED++AI+HVFSC+L+G R+YK +
Sbjct:    3 VNYVPPRVAAQRLGVSTRTLERWLEAGKIKGIKTPGGQRRYDLDSVVSIPPAKPKRDIILYARVSSRSQKSDLEQQVRFLKSRYPGCEVIFDIGSGLNFKRKGLQSLLDRVLSNTCELIVVAHKDRLCRFGFDLISWLCGKFETKILVLDETHLSPEQEMVEDILAIVHVFSCRLYGLRKYKKR 186          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: A0A8J7EZF4_9CYAN (IS607 family transposase n=9 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J7EZF4_9CYAN)

HSP 1 Score: 171 bits (433), Expect = 9.410e-51
Identity = 89/190 (46.84%), Postives = 119/190 (62.63%), Query Frame = 1
Query:    4 NYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRTTTRRRIA--YCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPKDT 567
            NYV   V A K GVS  +  RW  AG +  I T GG  RY LD ++  R       R+   Y RVSS  QK DL +QV   K  +P+ EI+  IGSG+NFKRKGL  ++D VL   ++ VV+AH+DRLCRF FD   W+C R+ T  +V DQ   S E+E+ ED++AI+HVFSC+L+G R+YK +  +D+
Sbjct:    4 NYVPPRVAASKLGVSTKTLERWLEAGKIEGIFTQGGQRRYNLDSVIPPRPGNPADERVTVLYARVSSRSQKTDLEQQVNFLKSRYPDAEIITDIGSGLNFKRKGLQTLLDRVLSNSIKLVVVAHKDRLCRFGFDIISWLCARQQTEILVLDQKNLSPEREMVEDILAIVHVFSCRLYGLRKYKKQISEDS 193          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: K9X5D0_9NOST (Putative site-specific integrase-resolvase n=2 Tax=Nostocales TaxID=1161 RepID=K9X5D0_9NOST)

HSP 1 Score: 167 bits (423), Expect = 3.360e-49
Identity = 86/191 (45.03%), Postives = 121/191 (63.35%), Query Frame = 1
Query:    1 MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRTTTRRR--IAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPKDT 567
            +NYV   V A + GVS  +  RW   G +  I T GG  RY LD ++ +R       R  + Y RVSS  QK+DL +Q++  +  +P+ EI+  IGSG+NF+RKGL  ++D VL    + VVIAH+DRLCRF FD   W+C R+ T  +V DQ   S E+E+ ED++AIIHVFSC+L+G R+YK +  +D+
Sbjct:    3 VNYVPPRVAATRLGVSTKTLERWLQDGKIEGIFTQGGQRRYNLDSVIPVRRGNPADERAVLIYARVSSRSQKNDLSQQIEFLQSRYPDAEIIADIGSGLNFRRKGLQTLLDRVLTNTCKLVVIAHKDRLCRFGFDLISWLCARQQTEILVLDQKNLSPEREMVEDILAIIHVFSCRLYGLRKYKKQVAEDS 193          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: A0A1B7VAC1_9NOST (DNA invertase n=9 Tax=Nostocales TaxID=1161 RepID=A0A1B7VAC1_9NOST)

HSP 1 Score: 165 bits (417), Expect = 2.710e-48
Identity = 89/191 (46.60%), Postives = 122/191 (63.87%), Query Frame = 1
Query:    1 MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIR--DRTTTRRRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPKDT 567
            +NYV   V A + GVS  +  RW   G +  I T GG  RY LD I+ +R  +    R  I Y RVSS  QK+DL +QVQ  +  +P+ EI+  IGSG+NFKRKGL  ++D VL    + VVIAH+DRLCRF FD   W+C R+ T+ +V +Q   S E+E+ ED++AIIHVFS +L+G R+YK +  +D+
Sbjct:    3 VNYVPPRVAATRLGVSTKTLERWLEDGKIEGIFTQGGQRRYNLDSIIPVRHGNPPDERATILYARVSSRSQKNDLEQQVQFLQSRYPDAEIITDIGSGLNFKRKGLQTLLDRVLGNTCKLVVIAHKDRLCRFGFDLISWLCARQQTQVLVLNQANLSPEREMVEDILAIIHVFSWRLYGLRKYKKQVAEDS 193          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: UPI000B88C942 (IS607 family transposase n=1 Tax=Allochromatium warmingii TaxID=61595 RepID=UPI000B88C942)

HSP 1 Score: 164 bits (414), Expect = 1.980e-47
Identity = 82/186 (44.09%), Postives = 118/186 (63.44%), Query Frame = 1
Query:    4 NYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRTTTRRRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPK 561
            NY+ G   AK  GV +++ R +  +G + +I+TP G  RY   D+ A  + +  RR + YCRVSS  Q+DDL RQ+    E +PE E++  +GS +N+KRKGL  ++  +L G   ++V+AHRDRL RF F+  EWI     +  VV +  ++  EQELTEDL+ IIHVFSC+L+G R YK+K  K
Sbjct:    3 NYLPGRQAAKLLGVCQSTLRTYADSGKITAIRTPSGQRRY---DVTAFIEGSVERRIVCYCRVSSPSQRDDLQRQISYLSERYPEAEVIKDVGSALNYKRKGLKSILGRILRGEKLKIVVAHRDRLARFGFELIEWIVNELGSELVVLNDTLKEPEQELTEDLLTIIHVFSCRLYGLRDYKSKKDK 185          
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Match: UPI0005A2CEF3 (IS607 family transposase n=1 Tax=Allocoleopsis franciscana TaxID=2886352 RepID=UPI0005A2CEF3)

HSP 1 Score: 161 bits (408), Expect = 5.860e-47
Identity = 83/187 (44.39%), Postives = 119/187 (63.64%), Query Frame = 1
Query:    4 NYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIRDRTTTRRRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFKRKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQDQVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPKD 564
            N+V   V A + GVS  +  RW  AG +++  TPGG  RY LD I+   D  T R  I Y RVSS  QK+DL  Q+   +  +P  +I+  IGSG+N++RKG L +++ +L   V  VV+AH+DRLCRF FD   W+C+R+    +V +Q   S E+E+ ED++AIIHVFSC+L+G R+YK +  +D
Sbjct:    6 NHVPPRVAAARLGVSTKTLERWLEAGKIKAFITPGGQRRYDLDSIIPAGD--TERISIIYARVSSRSQKNDLLTQIDFLQSHYPNAKIIQDIGSGLNYRRKGFLSLLERILSNDVGLVVVAHKDRLCRFGFDLVAWLCERQKCELLVLNQSHLSPEREMVEDILAIIHVFSCRLYGLRKYKKQITED 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0SSH2_9CYAN1.030e-5348.39IS607 family transposase n=5 Tax=unclassified Moor... [more]
A0A6P0IUF8_9CYAN1.500e-5348.17IS607 family transposase n=3 Tax=unclassified Moor... [more]
A0A6P0PP25_9CYAN4.280e-5347.40IS607 family transposase n=7 Tax=unclassified Moor... [more]
A0A6P0SVG0_9CYAN2.450e-5247.59IS607 family transposase n=2 Tax=unclassified Moor... [more]
A0A1U7MZ12_9CYAN4.210e-5247.83DNA invertase n=12 Tax=Moorena TaxID=1155738 RepID... [more]
A0A8J7EZF4_9CYAN9.410e-5146.84IS607 family transposase n=9 Tax=Cyanobacteria Tax... [more]
K9X5D0_9NOST3.360e-4945.03Putative site-specific integrase-resolvase n=2 Tax... [more]
A0A1B7VAC1_9NOST2.710e-4846.60DNA invertase n=9 Tax=Nostocales TaxID=1161 RepID=... [more]
UPI000B88C9421.980e-4744.09IS607 family transposase n=1 Tax=Allochromatium wa... [more]
UPI0005A2CEF35.860e-4744.39IS607 family transposase n=1 Tax=Allocoleopsis fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:573228..573794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog32057.KB217478_gene1459
PFAMsMerR,MerR_1,Resolvase
Model size567
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-52
EggNOG OGsCOG2452@1|root,COG2452@2|Bacteria,1G4P1@1117|Cyanobacteria,1HPMH@1161|Nostocales
DescriptionResolvase, N terminal domain
Cds size567
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789865.770539-CDS-P-littoralis_Contig18:573227..5737941680789865.770539-CDS-P-littoralis_Contig18:573227..573794Pylaiella littoralis U1_48CDSP-littoralis_Contig18 573228..573794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.126.1prot_P-littoralis_Contig18.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 573228..573794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.126.1

>prot_P-littoralis_Contig18.126.1 ID=prot_P-littoralis_Contig18.126.1|Name=mRNA_P-littoralis_Contig18.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp
MNYVSGSVLAKKYGVSKTSARRWRIAGLLRSIQTPGGHHRYLLDDIVAIR
DRTTTRRRIAYCRVSSSKQKDDLCRQVQSFKETHPEHEIVPYIGSGINFK
RKGLLRVVDAVLEGHVEEVVIAHRDRLCRFPFDFFEWICKRENTRNVVQD
QVIRSSEQELTEDLVAIIHVFSCKLHGSRRYKNKGPKDT
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mRNA from alignment at P-littoralis_Contig18:573228..573794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.126.1 ID=mRNA_P-littoralis_Contig18.126.1|Name=mRNA_P-littoralis_Contig18.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig18:573228..573794+ (Pylaiella littoralis U1_48)
ATGAATTATGTCTCAGGATCGGTCCTTGCAAAGAAATACGGAGTGTCAAA AACTTCTGCGAGGCGATGGAGAATCGCAGGACTCTTGCGATCAATTCAGA CACCAGGAGGACACCACCGATACCTTCTCGATGACATCGTCGCGATCAGA GACCGCACAACTACCAGAAGGAGGATCGCATATTGCCGAGTCAGCTCGTC GAAACAGAAGGATGACTTGTGCAGGCAGGTCCAATCCTTCAAAGAAACGC ACCCCGAACACGAGATCGTACCATACATTGGCTCAGGAATCAACTTCAAA AGGAAAGGCCTTCTGCGAGTGGTTGACGCCGTTCTCGAAGGACATGTCGA AGAAGTTGTTATCGCGCACAGGGATAGACTGTGTCGGTTCCCTTTCGATT TTTTTGAATGGATCTGCAAGAGGGAGAATACACGAAACGTGGTTCAAGAC CAAGTCATACGCTCTTCCGAGCAAGAGCTCACAGAAGATCTCGTGGCCAT CATCCATGTGTTCTCCTGCAAGCTGCACGGAAGCAGAAGGTATAAGAACA AAGGCCCGAAAGATACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:573228..573794+

>mRNA_P-littoralis_Contig18.126.1 ID=mRNA_P-littoralis_Contig18.126.1|Name=mRNA_P-littoralis_Contig18.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig18:573228..573794+ (Pylaiella littoralis U1_48)
ATGAATTATGTCTCAGGATCGGTCCTTGCAAAGAAATACGGAGTGTCAAA
AACTTCTGCGAGGCGATGGAGAATCGCAGGACTCTTGCGATCAATTCAGA
CACCAGGAGGACACCACCGATACCTTCTCGATGACATCGTCGCGATCAGA
GACCGCACAACTACCAGAAGGAGGATCGCATATTGCCGAGTCAGCTCGTC
GAAACAGAAGGATGACTTGTGCAGGCAGGTCCAATCCTTCAAAGAAACGC
ACCCCGAACACGAGATCGTACCATACATTGGCTCAGGAATCAACTTCAAA
AGGAAAGGCCTTCTGCGAGTGGTTGACGCCGTTCTCGAAGGACATGTCGA
AGAAGTTGTTATCGCGCACAGGGATAGACTGTGTCGGTTCCCTTTCGATT
TTTTTGAATGGATCTGCAAGAGGGAGAATACACGAAACGTGGTTCAAGAC
CAAGTCATACGCTCTTCCGAGCAAGAGCTCACAGAAGATCTCGTGGCCAT
CATCCATGTGTTCTCCTGCAAGCTGCACGGAAGCAGAAGGTATAAGAACA
AAGGCCCGAAAGATACG
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